Wall clock time and date at job start Wed Apr 1 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33490 * 126.82818 * 2 1 4 4 N 1.20660 * 113.15447 * 179.97438 * 3 2 1 5 5 C 1.30008 * 112.30280 * 359.73169 * 4 3 2 6 6 C 1.50694 * 127.33567 * 180.27428 * 5 4 3 7 7 C 1.53003 * 117.50071 * 8.89543 * 6 5 4 8 8 C 1.52999 * 117.50181 * 300.23346 * 6 5 4 9 9 C 1.37357 * 126.82787 * 179.97438 * 2 1 3 10 10 C 1.47390 * 128.56480 * 359.96173 * 9 2 1 11 11 O 1.21614 * 119.99963 * 90.02804 * 10 9 2 12 12 N 1.34776 * 120.00374 * 270.02335 * 10 9 2 13 13 C 1.46597 * 119.74703 * 0.02562 * 12 10 9 14 14 C 1.53887 * 110.71177 * 227.73210 * 13 12 10 15 15 C 1.52010 * 107.28315 * 308.20031 * 14 13 12 16 16 H 1.08997 * 110.99561 * 303.47811 * 15 14 13 17 17 C 1.53696 * 115.01721 * 175.44436 * 15 14 13 18 18 C 1.55298 * 101.81775 * 206.51612 * 17 15 14 19 19 N 1.48156 * 107.03940 * 22.45015 * 18 17 15 20 20 C 1.36940 * 126.39709 * 184.98253 * 19 18 17 21 21 H 1.08005 * 120.00151 * 173.08748 * 20 19 18 22 22 C 1.38811 * 119.99904 * 353.07624 * 20 19 18 23 23 N 1.31623 * 120.00067 * 5.77328 * 22 20 19 24 24 Si 1.86800 * 120.00008 * 185.76363 * 22 20 19 25 25 H 1.48507 * 109.47008 * 94.99503 * 24 22 20 26 26 H 1.48498 * 109.47273 * 214.99254 * 24 22 20 27 27 H 1.48501 * 109.47334 * 334.99322 * 24 22 20 28 28 C 1.45503 * 107.20874 * 4.99900 * 19 18 17 29 29 H 1.08998 * 109.00148 * 86.37331 * 28 19 18 30 30 C 1.47795 * 119.75122 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.46889 * 270.00050 * 1 2 3 32 32 H 1.08998 * 109.46707 * 30.00095 * 1 2 3 33 33 H 1.08995 * 109.46853 * 150.00057 * 1 2 3 34 34 H 1.09008 * 115.55109 * 154.56590 * 6 5 4 35 35 H 1.08998 * 117.49656 * 359.97438 * 7 6 5 36 36 H 1.08995 * 117.49942 * 145.02237 * 7 6 5 37 37 H 1.08997 * 117.50511 * 214.98455 * 8 6 5 38 38 H 1.09003 * 117.49494 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.23101 * 348.05307 * 13 12 10 40 40 H 1.09004 * 109.22964 * 107.45790 * 13 12 10 41 41 H 1.08997 * 109.89058 * 67.63849 * 14 13 12 42 42 H 1.09003 * 109.89567 * 188.75065 * 14 13 12 43 43 H 1.08996 * 110.96574 * 324.64994 * 17 15 14 44 44 H 1.09001 * 110.95564 * 88.35614 * 17 15 14 45 45 H 1.09005 * 109.92162 * 141.79503 * 18 17 15 46 46 H 1.09003 * 109.92288 * 263.10475 * 18 17 15 47 47 H 0.97003 * 119.99987 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.06887 * 9.53357 * 30 12 10 49 49 H 1.08999 * 110.15658 * 248.01396 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 0.0005 5 6 3.6747 -0.5021 0.0065 6 6 4.9964 -1.2259 0.0148 7 6 6.2593 -0.3883 0.2262 8 6 5.9490 -0.9707 -1.1550 9 6 2.3304 -1.0995 0.0005 10 6 1.9587 -2.5257 0.0019 11 8 1.8053 -3.1152 -1.0507 12 7 1.7889 -3.1768 1.1697 13 6 1.9748 -2.4608 2.4354 14 6 2.8640 -3.2721 3.3941 15 6 2.2733 -4.6698 3.4841 16 1 1.2325 -4.6340 3.8057 17 6 3.0915 -5.6689 4.3176 18 6 2.6842 -7.0246 3.6789 19 7 2.1959 -6.7309 2.3113 20 6 1.6489 -7.6285 1.4336 21 1 1.2239 -7.2832 0.5027 22 6 1.6408 -8.9823 1.7403 23 7 2.0543 -9.3922 2.9207 24 14 1.0429 -10.2225 0.4777 25 1 2.2040 -10.7619 -0.2747 26 1 0.3416 -11.3339 1.1692 27 1 0.1078 -9.5575 -0.4649 28 6 2.4063 -5.3108 2.0748 29 1 3.4184 -5.1596 1.6995 30 6 1.4167 -4.6071 1.1646 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.9805 -2.2289 0.4412 35 1 6.1340 0.6863 0.3590 36 1 7.0742 -0.8404 0.7914 37 1 6.5599 -1.8056 -1.4980 38 1 5.6194 -0.2795 -1.9308 39 1 2.4455 -1.4979 2.2373 40 1 1.0029 -2.2962 2.9008 41 1 3.8802 -3.3235 3.0033 42 1 2.8677 -2.8068 4.3798 43 1 4.1604 -5.4892 4.2027 44 1 2.8021 -5.6295 5.3677 45 1 3.5487 -7.6868 3.6303 46 1 1.8906 -7.4878 4.2651 47 1 2.0490 -10.3383 3.1349 48 1 1.4878 -5.0085 0.1537 49 1 0.4034 -4.7329 1.5461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042156325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:01 Heat of formation + Delta-G solvation = 84.607548 kcal Electronic energy + Delta-G solvation = -31696.808696 eV Core-core repulsion = 27628.942253 eV Total energy + Delta-G solvation = -4067.866443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -45.04709 -40.17444 -38.28052 -37.66735 -35.42983 -33.93931 -33.03454 -32.90846 -31.30116 -29.64098 -28.59771 -28.07614 -25.44070 -24.68664 -24.26680 -22.98631 -22.59538 -22.29682 -20.34345 -20.02809 -19.50581 -19.06610 -18.00908 -17.58252 -16.85721 -16.43001 -15.98150 -15.53065 -15.08608 -14.87862 -14.67415 -14.36268 -14.12533 -13.76547 -13.69484 -13.56021 -13.24177 -13.08824 -12.89681 -12.66493 -12.29744 -12.24710 -11.94676 -11.84426 -11.72189 -11.61237 -11.45012 -11.34775 -10.98323 -10.85255 -10.76919 -10.64686 -10.19110 -10.07386 -9.99950 -9.92610 -9.69391 -9.68376 -9.56863 -9.39959 -8.64176 -8.52162 -6.86858 -5.75334 -3.08461 1.13549 1.67607 2.41577 2.67610 3.10395 3.40731 3.47046 3.48088 3.57950 3.74621 4.07094 4.48156 4.49293 4.59490 4.66609 4.75339 4.84865 4.85867 4.93660 5.07666 5.09148 5.14827 5.31364 5.35888 5.39672 5.44842 5.50035 5.55855 5.61450 5.64362 5.70871 5.74434 5.83475 5.85231 5.87246 5.97443 6.02874 6.07611 6.12855 6.31815 6.42769 6.51901 6.64335 6.70412 7.00541 7.42384 7.53421 7.57881 7.78710 8.04940 8.15586 8.21101 9.16459 9.79603 10.46499 11.37622 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.003211 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.137263 B = 8718.956390 C = 8930.223685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.010 3.990 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.089 3.911 6 C -0.092 4.092 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.232 4.232 10 C 0.594 3.406 11 O -0.525 6.525 12 N -0.593 5.593 13 C 0.111 3.889 14 C -0.118 4.118 15 C -0.112 4.112 16 H 0.077 0.923 17 C -0.137 4.137 18 C 0.178 3.822 19 N -0.592 5.592 20 C -0.231 4.231 21 H 0.080 0.920 22 C -0.003 4.003 23 N -0.919 5.919 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.157 3.843 29 H 0.025 0.975 30 C 0.116 3.884 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.252 0.748 48 H 0.094 0.906 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 21.033 0.008 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 O 0.034 5.966 4 N -0.061 5.061 5 C -0.072 4.072 6 C -0.111 4.111 7 C -0.197 4.197 8 C -0.195 4.195 9 C -0.240 4.240 10 C 0.379 3.621 11 O -0.401 6.401 12 N -0.326 5.326 13 C -0.012 4.012 14 C -0.157 4.157 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.176 4.176 18 C 0.054 3.946 19 N -0.317 5.317 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.200 4.200 23 N -0.566 5.566 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.048 3.952 29 H 0.042 0.958 30 C -0.006 4.006 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.112 0.888 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.134 21.507 -0.558 21.620 hybrid contribution -0.576 -1.496 -0.537 1.691 sum 1.558 20.011 -1.095 20.101 Atomic orbital electron populations 1.20462 0.83130 1.05285 1.04636 1.24570 0.95978 0.85040 0.99711 1.84525 1.11053 1.32868 1.68176 1.73532 0.95874 1.16326 1.20397 1.23707 0.94273 0.88493 1.00773 1.20273 0.84750 0.99729 1.06344 1.23041 0.97084 1.00047 0.99564 1.23053 1.01170 1.03608 0.91656 1.21862 0.92629 0.95403 1.14080 1.16954 0.77250 0.83891 0.84022 1.90835 1.50803 1.67422 1.31026 1.48214 1.67583 1.11671 1.05112 1.21699 1.00127 0.95000 0.84403 1.21801 0.99173 0.96135 0.98584 1.22279 0.99763 0.92889 0.98276 0.90414 1.22714 0.98601 0.97874 0.98368 1.21537 0.98321 0.90458 0.84305 1.44178 1.72479 1.01453 1.13596 1.19041 1.31639 0.86751 0.98466 0.90264 1.24797 1.01259 0.96862 0.97094 1.69956 1.52737 1.14254 1.19662 0.86153 0.78172 0.81244 0.80573 1.21573 1.21774 1.20492 1.20972 0.95615 0.86285 0.92368 0.95815 1.21798 0.98902 0.76883 1.02982 0.88709 0.89145 0.88656 0.85304 0.88010 0.87699 0.87530 0.88510 0.90782 0.91529 0.91414 0.90788 0.92506 0.92210 0.93949 0.93226 0.93738 0.88763 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.33 36.01 0.37 -0.19 16 2 C 0.01 0.11 7.55 -34.63 -0.26 -0.15 16 3 O 0.10 1.11 11.06 18.66 0.21 1.32 16 4 N -0.36 -4.55 11.71 34.78 0.41 -4.15 16 5 C 0.09 1.16 6.93 -79.77 -0.55 0.61 16 6 C -0.09 -1.08 6.31 -91.77 -0.58 -1.66 16 7 C -0.16 -1.52 10.17 -26.69 -0.27 -1.79 16 8 C -0.16 -1.61 10.24 -26.69 -0.27 -1.88 16 9 C -0.23 -3.12 4.16 -102.90 -0.43 -3.55 16 10 C 0.59 9.51 7.46 -12.54 -0.09 9.42 16 11 O -0.52 -10.45 16.48 5.27 0.09 -10.36 16 12 N -0.59 -8.93 3.01 -174.04 -0.52 -9.45 16 13 C 0.11 1.32 6.23 -3.53 -0.02 1.30 16 14 C -0.12 -1.48 5.73 -26.77 -0.15 -1.63 16 15 C -0.11 -1.82 2.62 -89.49 -0.23 -2.05 16 16 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 17 C -0.14 -2.41 6.54 -25.15 -0.16 -2.57 16 18 C 0.18 4.16 5.44 -1.91 -0.01 4.15 16 19 N -0.59 -14.55 3.35 -162.92 -0.55 -15.09 16 20 C -0.23 -6.28 9.89 -15.06 -0.15 -6.43 16 21 H 0.08 2.11 7.37 -52.48 -0.39 1.72 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -26.55 10.49 55.49 0.58 -25.96 16 24 Si 0.91 22.06 29.56 -169.99 -5.02 17.04 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.16 3.11 2.75 -67.83 -0.19 2.92 16 29 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 30 C 0.12 2.12 5.64 -3.97 -0.02 2.10 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.13 1.58 8.14 -51.92 -0.42 1.15 16 35 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.82 6.16 -51.93 -0.32 0.50 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 1.10 7.59 -51.93 -0.39 0.71 16 46 H 0.05 1.28 7.45 -51.93 -0.39 0.89 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.09 1.96 6.77 -51.93 -0.35 1.61 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -32.27 393.78 -9.71 -41.98 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.71 Total: 0.37 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.13 Total: -1.61 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.08 Total: -54.66 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.29 Total: -9.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.27 -9.71 -41.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042156325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.585 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds