Wall clock time and date at job start Wed Apr 1 2020 06:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33490 * 126.82818 * 2 1 4 4 N 1.20660 * 113.15447 * 179.97438 * 3 2 1 5 5 C 1.30008 * 112.30280 * 359.73169 * 4 3 2 6 6 C 1.50694 * 127.33567 * 180.27428 * 5 4 3 7 7 C 1.53003 * 117.50071 * 8.89543 * 6 5 4 8 8 C 1.52999 * 117.50181 * 300.23346 * 6 5 4 9 9 C 1.37357 * 126.82787 * 179.97438 * 2 1 3 10 10 C 1.47390 * 128.56480 * 359.96173 * 9 2 1 11 11 O 1.21614 * 119.99963 * 90.02804 * 10 9 2 12 12 N 1.34776 * 120.00374 * 270.02335 * 10 9 2 13 13 C 1.46597 * 119.74703 * 0.02562 * 12 10 9 14 14 C 1.53887 * 110.71177 * 227.73210 * 13 12 10 15 15 C 1.52010 * 107.28315 * 308.20031 * 14 13 12 16 16 H 1.08997 * 110.99561 * 303.47811 * 15 14 13 17 17 C 1.53696 * 115.01721 * 175.44436 * 15 14 13 18 18 C 1.55298 * 101.81775 * 206.51612 * 17 15 14 19 19 N 1.48156 * 107.03940 * 22.45015 * 18 17 15 20 20 C 1.36940 * 126.39709 * 184.98253 * 19 18 17 21 21 H 1.08005 * 120.00151 * 173.08748 * 20 19 18 22 22 C 1.38811 * 119.99904 * 353.07624 * 20 19 18 23 23 N 1.31623 * 120.00067 * 5.77328 * 22 20 19 24 24 Si 1.86800 * 120.00008 * 185.76363 * 22 20 19 25 25 H 1.48507 * 109.47008 * 94.99503 * 24 22 20 26 26 H 1.48498 * 109.47273 * 214.99254 * 24 22 20 27 27 H 1.48501 * 109.47334 * 334.99322 * 24 22 20 28 28 C 1.45503 * 107.20874 * 4.99900 * 19 18 17 29 29 H 1.08998 * 109.00148 * 86.37331 * 28 19 18 30 30 C 1.47795 * 119.75122 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.46889 * 270.00050 * 1 2 3 32 32 H 1.08998 * 109.46707 * 30.00095 * 1 2 3 33 33 H 1.08995 * 109.46853 * 150.00057 * 1 2 3 34 34 H 1.09008 * 115.55109 * 154.56590 * 6 5 4 35 35 H 1.08998 * 117.49656 * 359.97438 * 7 6 5 36 36 H 1.08995 * 117.49942 * 145.02237 * 7 6 5 37 37 H 1.08997 * 117.50511 * 214.98455 * 8 6 5 38 38 H 1.09003 * 117.49494 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.23101 * 348.05307 * 13 12 10 40 40 H 1.09004 * 109.22964 * 107.45790 * 13 12 10 41 41 H 1.08997 * 109.89058 * 67.63849 * 14 13 12 42 42 H 1.09003 * 109.89567 * 188.75065 * 14 13 12 43 43 H 1.08996 * 110.96574 * 324.64994 * 17 15 14 44 44 H 1.09001 * 110.95564 * 88.35614 * 17 15 14 45 45 H 1.09005 * 109.92162 * 141.79503 * 18 17 15 46 46 H 1.09003 * 109.92288 * 263.10475 * 18 17 15 47 47 H 0.97003 * 119.99987 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.06887 * 9.53357 * 30 12 10 49 49 H 1.08999 * 110.15658 * 248.01396 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 0.0005 5 6 3.6747 -0.5021 0.0065 6 6 4.9964 -1.2259 0.0148 7 6 6.2593 -0.3883 0.2262 8 6 5.9490 -0.9707 -1.1550 9 6 2.3304 -1.0995 0.0005 10 6 1.9587 -2.5257 0.0019 11 8 1.8053 -3.1152 -1.0507 12 7 1.7889 -3.1768 1.1697 13 6 1.9748 -2.4608 2.4354 14 6 2.8640 -3.2721 3.3941 15 6 2.2733 -4.6698 3.4841 16 1 1.2325 -4.6340 3.8057 17 6 3.0915 -5.6689 4.3176 18 6 2.6842 -7.0246 3.6789 19 7 2.1959 -6.7309 2.3113 20 6 1.6489 -7.6285 1.4336 21 1 1.2239 -7.2832 0.5027 22 6 1.6408 -8.9823 1.7403 23 7 2.0543 -9.3922 2.9207 24 14 1.0429 -10.2225 0.4777 25 1 2.2040 -10.7619 -0.2747 26 1 0.3416 -11.3339 1.1692 27 1 0.1078 -9.5575 -0.4649 28 6 2.4063 -5.3108 2.0748 29 1 3.4184 -5.1596 1.6995 30 6 1.4167 -4.6071 1.1646 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.9805 -2.2289 0.4412 35 1 6.1340 0.6863 0.3590 36 1 7.0742 -0.8404 0.7914 37 1 6.5599 -1.8056 -1.4980 38 1 5.6194 -0.2795 -1.9308 39 1 2.4455 -1.4979 2.2373 40 1 1.0029 -2.2962 2.9008 41 1 3.8802 -3.3235 3.0033 42 1 2.8677 -2.8068 4.3798 43 1 4.1604 -5.4892 4.2027 44 1 2.8021 -5.6295 5.3677 45 1 3.5487 -7.6868 3.6303 46 1 1.8906 -7.4878 4.2651 47 1 2.0490 -10.3383 3.1349 48 1 1.4878 -5.0085 0.1537 49 1 0.4034 -4.7329 1.5461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042156325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:00 Heat of formation + Delta-G solvation = 66.270498 kcal Electronic energy + Delta-G solvation = -31697.603850 eV Core-core repulsion = 27628.942253 eV Total energy + Delta-G solvation = -4068.661597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.98696 -41.50441 -39.73769 -38.51681 -36.91175 -34.94440 -34.58291 -33.91237 -32.92015 -31.09729 -30.21576 -28.93127 -26.64967 -26.46378 -25.32830 -24.17136 -23.60506 -23.38591 -21.81860 -21.52214 -20.74859 -20.08941 -19.01894 -18.73789 -18.42320 -17.74079 -17.16955 -16.81923 -16.42495 -16.32403 -15.83239 -15.71606 -15.57926 -15.20865 -14.87966 -14.47164 -14.42443 -14.08773 -13.90026 -13.84305 -13.71767 -13.58594 -13.16450 -13.13810 -13.05864 -12.77465 -12.66173 -12.55391 -12.54765 -12.31833 -12.15640 -12.00775 -11.75029 -11.58350 -11.49392 -11.41476 -11.29969 -11.05637 -10.72340 -10.58144 -10.37985 -9.82078 -8.89859 -7.88269 -5.22068 0.24701 0.71179 1.20555 1.43609 1.45387 1.53818 1.65228 2.04224 2.48642 2.74960 2.83371 3.18343 3.31408 3.41817 3.53993 3.74110 3.77915 3.84374 3.92317 3.94876 3.95310 4.00595 4.24466 4.25247 4.28056 4.35429 4.48717 4.59613 4.60280 4.62748 4.64185 4.67676 4.70339 4.79381 4.86130 4.87795 4.89188 4.99036 5.07507 5.07692 5.12306 5.14114 5.20913 5.33283 5.50219 5.55560 5.67779 5.76772 6.18267 6.21886 6.91562 7.07563 7.14184 7.75785 8.43151 9.23472 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.003211 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.137263 B = 8718.956390 C = 8930.223685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.037 3.963 3 O 0.100 5.900 4 N -0.365 5.365 5 C 0.086 3.914 6 C -0.115 4.115 7 C -0.138 4.138 8 C -0.159 4.159 9 C -0.264 4.264 10 C 0.599 3.401 11 O -0.575 6.575 12 N -0.587 5.587 13 C 0.108 3.892 14 C -0.109 4.109 15 C -0.094 4.094 16 H 0.082 0.918 17 C -0.121 4.121 18 C 0.182 3.818 19 N -0.612 5.612 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.058 4.058 23 N -0.946 5.946 24 Si 0.968 3.032 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.149 3.851 29 H 0.007 0.993 30 C 0.129 3.871 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.003 0.997 46 H 0.018 0.982 47 H 0.247 0.753 48 H 0.060 0.940 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 24.197 1.064 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 O 0.040 5.960 4 N -0.071 5.071 5 C -0.075 4.075 6 C -0.134 4.134 7 C -0.175 4.175 8 C -0.197 4.197 9 C -0.272 4.272 10 C 0.386 3.614 11 O -0.455 6.455 12 N -0.318 5.318 13 C -0.013 4.013 14 C -0.147 4.147 15 C -0.114 4.114 16 H 0.100 0.900 17 C -0.159 4.159 18 C 0.057 3.943 19 N -0.338 5.338 20 C -0.367 4.367 21 H 0.094 0.906 22 C -0.252 4.252 23 N -0.595 5.595 24 Si 0.797 3.203 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.195 1.195 28 C 0.041 3.959 29 H 0.024 0.976 30 C 0.006 3.994 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.021 0.979 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.078 0.922 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.746 24.736 0.520 24.803 hybrid contribution -0.454 -2.442 -0.904 2.643 sum 1.292 22.294 -0.384 22.334 Atomic orbital electron populations 1.20719 0.80384 1.06038 1.06566 1.25135 0.97154 0.83892 0.96469 1.84523 1.10840 1.32821 1.67855 1.73523 0.96445 1.16028 1.21153 1.23867 0.94524 0.88622 1.00522 1.20331 0.85350 0.99790 1.07940 1.23094 0.95995 0.99773 0.98666 1.23119 1.00805 1.03963 0.91835 1.21586 0.93673 0.94282 1.17628 1.17236 0.76044 0.84791 0.83312 1.90804 1.53001 1.68821 1.32831 1.48204 1.66915 1.10244 1.06471 1.21973 1.01697 0.95001 0.82639 1.21789 0.98615 0.93556 1.00774 1.22197 1.00184 0.94520 0.94501 0.90000 1.22585 0.99528 0.94304 0.99526 1.21346 0.95624 0.93273 0.84054 1.44432 1.72105 1.03399 1.13820 1.19317 1.30923 0.87634 0.98829 0.90553 1.25539 1.02303 0.98536 0.98808 1.70150 1.54220 1.13981 1.21102 0.85215 0.77612 0.78976 0.78534 1.21787 1.21722 1.19507 1.21109 0.94847 0.84427 0.95526 0.97589 1.21388 0.98567 0.78855 1.00556 0.85976 0.86496 0.89739 0.86341 0.87990 0.85827 0.86654 0.89013 0.89124 0.88867 0.91819 0.86895 0.91329 0.89442 0.97867 0.96379 0.94355 0.92169 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.33 71.24 0.74 -0.16 16 2 C 0.04 0.72 7.55 25.48 0.19 0.91 16 3 O 0.10 2.07 11.06 77.01 0.85 2.92 16 4 N -0.37 -8.65 11.71 -44.79 -0.52 -9.17 16 5 C 0.09 2.14 6.93 45.16 0.31 2.45 16 6 C -0.11 -2.61 6.31 -11.54 -0.07 -2.69 16 7 C -0.14 -2.37 10.17 30.62 0.31 -2.06 16 8 C -0.16 -3.13 10.24 30.62 0.31 -2.82 16 9 C -0.26 -6.76 4.16 -18.75 -0.08 -6.83 16 10 C 0.60 19.10 7.46 86.65 0.65 19.75 16 11 O -0.57 -23.72 16.48 -4.07 -0.07 -23.79 16 12 N -0.59 -17.12 3.01 -822.79 -2.48 -19.59 16 13 C 0.11 2.22 6.23 86.66 0.54 2.76 16 14 C -0.11 -2.32 5.73 30.57 0.18 -2.14 16 15 C -0.09 -2.86 2.62 -10.06 -0.03 -2.88 16 16 H 0.08 2.47 8.13 -2.39 -0.02 2.45 16 17 C -0.12 -4.07 6.54 31.62 0.21 -3.86 16 18 C 0.18 8.76 5.44 86.85 0.47 9.23 16 19 N -0.61 -31.12 3.35 -669.34 -2.24 -33.36 16 20 C -0.24 -13.43 9.89 84.03 0.83 -12.60 16 21 H 0.08 4.24 7.37 -2.91 -0.02 4.22 16 22 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 23 N -0.95 -56.87 10.49 21.65 0.23 -56.64 16 24 Si 0.97 46.69 29.56 68.60 2.03 48.71 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 28 C 0.15 5.97 2.75 45.59 0.13 6.09 16 29 H 0.01 0.29 7.94 -2.39 -0.02 0.27 16 30 C 0.13 4.80 5.64 85.72 0.48 5.28 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 34 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.10 1.77 7.97 -2.39 -0.02 1.75 16 36 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.12 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 1.66 6.16 -2.39 -0.01 1.65 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.46 7.99 -2.39 -0.02 1.44 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 44 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 0.17 7.59 -2.38 -0.02 0.15 16 46 H 0.02 0.96 7.45 -2.39 -0.02 0.95 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.06 2.64 6.77 -2.39 -0.02 2.62 16 49 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -75.35 393.78 4.39 -70.96 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.95 Total: 12.42 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.64 Total: 7.54 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -5.01 Total: -118.77 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.78 Total: -20.87 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.35 4.39 -70.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042156325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.235 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds