Wall clock time and date at job start Wed Apr 1 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33487 * 126.83189 * 2 1 4 4 N 1.20667 * 113.15583 * 180.02562 * 3 2 1 5 5 C 1.30007 * 112.30202 * 0.02562 * 4 3 2 6 6 C 1.50706 * 127.33378 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49668 * 60.02763 * 6 5 4 8 8 C 1.53000 * 60.02940 * 252.51929 * 7 6 5 9 9 C 1.37364 * 126.82618 * 180.31630 * 2 1 3 10 10 C 1.47403 * 128.56756 * 359.97438 * 9 2 1 11 11 O 1.21608 * 119.99680 * 270.16654 * 10 9 2 12 12 N 1.34777 * 120.00067 * 90.16147 * 10 9 2 13 13 C 1.46599 * 119.75287 * 0.02562 * 12 10 9 14 14 C 1.53893 * 110.70533 * 132.25128 * 13 12 10 15 15 C 1.51978 * 107.28857 * 51.81736 * 14 13 12 16 16 H 1.08997 * 111.01962 * 56.51602 * 15 14 13 17 17 C 1.53700 * 115.00137 * 184.55793 * 15 14 13 18 18 C 1.55302 * 101.81563 * 153.46714 * 17 15 14 19 19 N 1.48158 * 107.03928 * 337.54882 * 18 17 15 20 20 C 1.36937 * 126.39845 * 174.96152 * 19 18 17 21 21 H 1.08003 * 120.00136 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99922 * 0.04554 * 20 19 18 23 23 N 1.31620 * 119.99924 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46913 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47018 * 119.99541 * 24 22 20 27 27 H 1.48492 * 109.46766 * 239.99907 * 24 22 20 28 28 C 1.45509 * 107.20607 * 354.99756 * 19 18 17 29 29 H 1.08999 * 109.57201 * 273.37764 * 28 19 18 30 30 C 1.47799 * 119.75058 * 179.73007 * 12 10 9 31 31 H 1.08995 * 109.46702 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47322 * 120.01885 * 1 2 3 33 33 H 1.08998 * 109.46893 * 240.02019 * 1 2 3 34 34 H 1.09000 * 115.55924 * 205.71168 * 6 5 4 35 35 H 1.09002 * 117.49918 * 145.01964 * 7 6 5 36 36 H 1.09002 * 117.49754 * 0.02562 * 7 6 5 37 37 H 1.09008 * 117.49673 * 107.47884 * 8 7 6 38 38 H 1.08999 * 117.49942 * 252.47315 * 8 7 6 39 39 H 1.08998 * 109.23173 * 252.56895 * 13 12 10 40 40 H 1.09001 * 109.22760 * 11.97682 * 13 12 10 41 41 H 1.08999 * 109.88990 * 171.25845 * 14 13 12 42 42 H 1.09003 * 109.89188 * 292.36792 * 14 13 12 43 43 H 1.09005 * 110.95810 * 271.59394 * 17 15 14 44 44 H 1.08997 * 110.96686 * 35.32894 * 17 15 14 45 45 H 1.08998 * 109.91921 * 218.20155 * 18 17 15 46 46 H 1.08996 * 110.08965 * 96.99033 * 18 17 15 47 47 H 0.97002 * 120.00081 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.06675 * 350.47536 * 30 12 10 49 49 H 1.08994 * 110.06069 * 112.04072 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0684 0.0000 4 7 3.4797 0.7831 -0.0005 5 6 3.6747 -0.5022 -0.0014 6 6 4.9965 -1.2261 -0.0028 7 6 5.9426 -0.9715 1.1724 8 6 6.2611 -0.3879 -0.2056 9 6 2.3304 -1.0995 -0.0061 10 6 1.9586 -2.5259 -0.0134 11 8 1.8027 -3.1190 1.0367 12 7 1.7915 -3.1727 -1.1840 13 6 1.9812 -2.4525 -2.4467 14 6 2.8728 -3.2612 -3.4056 15 6 2.2815 -4.6579 -3.5023 16 1 1.2416 -4.6206 -3.8268 17 6 3.1019 -5.6543 -4.3369 18 6 2.6924 -7.0121 -3.7041 19 7 2.2000 -6.7230 -2.3370 20 6 1.6492 -7.6233 -1.4644 21 1 1.3229 -7.2982 -0.4875 22 6 1.5108 -8.9537 -1.8352 23 7 1.9084 -9.3499 -3.0258 24 14 0.7600 -10.1820 -0.6447 25 1 0.3981 -9.4895 0.6181 26 1 -0.4584 -10.7770 -1.2502 27 1 1.7441 -11.2557 -0.3554 28 6 2.4103 -5.3037 -2.0949 29 1 3.4180 -5.1441 -1.7114 30 6 1.4246 -4.6044 -1.1849 31 1 -0.3632 1.0276 -0.0005 32 1 -0.3634 -0.5141 -0.8898 33 1 -0.3633 -0.5135 0.8902 34 1 4.9831 -2.2288 -0.4301 35 1 6.5517 -1.8067 1.5182 36 1 5.6087 -0.2808 1.9467 37 1 6.1365 0.6870 -0.3380 38 1 7.0800 -0.8388 -0.7661 39 1 1.0108 -2.2851 -2.9139 40 1 2.4527 -1.4909 -2.2441 41 1 2.8796 -2.7925 -4.3897 42 1 3.8879 -3.3145 -3.0121 43 1 2.8153 -5.6116 -5.3877 44 1 4.1706 -5.4753 -4.2183 45 1 3.5564 -7.6747 -3.6553 46 1 1.9014 -7.4763 -4.2932 47 1 1.8113 -10.2795 -3.2851 48 1 1.4969 -5.0097 -0.1756 49 1 0.4121 -4.7307 -1.5682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042156327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:50 Heat of formation + Delta-G solvation = 84.888816 kcal Electronic energy + Delta-G solvation = -31696.713725 eV Core-core repulsion = 27628.859479 eV Total energy + Delta-G solvation = -4067.854246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -45.04469 -40.18103 -38.28296 -37.66744 -35.43033 -33.93661 -33.03670 -32.91043 -31.30838 -29.65442 -28.59743 -28.08235 -25.43486 -24.69240 -24.26470 -22.98388 -22.59254 -22.29658 -20.35052 -20.03099 -19.50287 -19.06436 -18.00623 -17.58050 -16.85991 -16.43157 -15.98192 -15.52946 -15.08366 -14.87208 -14.67042 -14.35999 -14.12465 -13.76217 -13.69623 -13.55858 -13.25907 -13.09777 -12.90235 -12.67631 -12.29578 -12.24762 -11.96057 -11.84346 -11.71424 -11.59571 -11.44194 -11.34179 -10.97899 -10.83949 -10.78766 -10.65111 -10.18879 -10.06486 -9.99282 -9.92173 -9.69049 -9.67928 -9.57094 -9.39468 -8.65571 -8.52843 -6.88435 -5.74225 -3.08226 1.13700 1.67594 2.42454 2.67670 3.10506 3.39794 3.46706 3.48713 3.57756 3.74697 4.07115 4.48072 4.49091 4.59229 4.66645 4.75237 4.84924 4.85851 4.93724 5.08591 5.10388 5.14578 5.29857 5.35129 5.39419 5.45106 5.49937 5.57957 5.61993 5.64232 5.70733 5.73586 5.83551 5.86374 5.87073 5.97801 6.02946 6.08121 6.13147 6.32351 6.43104 6.51937 6.64920 6.70470 7.00231 7.42766 7.52963 7.58314 7.79342 8.05035 8.15940 8.21107 9.16595 9.79536 10.45773 11.38031 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.003211 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.232035 B = 8719.076739 C = 8987.835697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.011 3.989 3 O 0.096 5.904 4 N -0.356 5.356 5 C 0.089 3.911 6 C -0.092 4.092 7 C -0.157 4.157 8 C -0.160 4.160 9 C -0.233 4.233 10 C 0.594 3.406 11 O -0.525 6.525 12 N -0.593 5.593 13 C 0.111 3.889 14 C -0.118 4.118 15 C -0.112 4.112 16 H 0.078 0.922 17 C -0.137 4.137 18 C 0.177 3.823 19 N -0.591 5.591 20 C -0.229 4.229 21 H 0.080 0.920 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.157 3.843 29 H 0.023 0.977 30 C 0.116 3.884 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.056 0.944 47 H 0.252 0.748 48 H 0.094 0.906 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 20.967 0.279 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 O 0.034 5.966 4 N -0.062 5.062 5 C -0.072 4.072 6 C -0.111 4.111 7 C -0.195 4.195 8 C -0.197 4.197 9 C -0.241 4.241 10 C 0.379 3.621 11 O -0.401 6.401 12 N -0.326 5.326 13 C -0.013 4.013 14 C -0.157 4.157 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.316 5.316 20 C -0.357 4.357 21 H 0.098 0.902 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.048 3.952 29 H 0.040 0.960 30 C -0.006 4.006 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.112 0.888 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.424 21.446 0.842 21.599 hybrid contribution -0.650 -1.492 0.494 1.701 sum 1.774 19.954 1.336 20.077 Atomic orbital electron populations 1.20466 0.83135 1.05016 1.04936 1.24567 0.95978 0.85038 0.99664 1.84532 1.11058 1.32870 1.68147 1.73532 0.95876 1.16318 1.20440 1.23706 0.94259 0.88484 1.00757 1.20282 0.84790 0.99724 1.06308 1.23042 1.01203 1.03597 0.91628 1.23041 0.97023 1.00043 0.99633 1.21851 0.92630 0.95420 1.14167 1.16951 0.77226 0.83907 0.83993 1.90831 1.50743 1.67231 1.31286 1.48219 1.67683 1.11612 1.05097 1.21701 1.00106 0.94954 0.84491 1.21798 0.99143 0.96169 0.98591 1.22268 0.99782 0.92869 0.98255 0.90379 1.22712 0.98547 0.97874 0.98392 1.21552 0.98262 0.90392 0.84520 1.44177 1.72149 1.01332 1.13979 1.19092 1.33005 0.88369 0.95243 0.90194 1.24779 1.01287 0.97059 0.97033 1.69952 1.52214 1.15713 1.18921 0.86079 0.78473 0.81397 0.80093 1.20351 1.21743 1.21743 1.20873 0.95664 0.86277 0.92432 0.95978 1.21715 0.99043 0.76866 1.02945 0.89236 0.88671 0.88533 0.85310 0.87533 0.88514 0.88007 0.87702 0.91523 0.90779 0.90783 0.91421 0.92192 0.92541 0.94436 0.92530 0.93794 0.88795 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.33 36.01 0.37 -0.19 16 2 C 0.01 0.12 7.55 -34.63 -0.26 -0.14 16 3 O 0.10 1.11 11.06 18.66 0.21 1.32 16 4 N -0.36 -4.56 11.71 34.78 0.41 -4.15 16 5 C 0.09 1.17 6.94 -79.77 -0.55 0.62 16 6 C -0.09 -1.08 6.32 -91.73 -0.58 -1.66 16 7 C -0.16 -1.60 10.23 -26.73 -0.27 -1.87 16 8 C -0.16 -1.52 10.17 -26.70 -0.27 -1.79 16 9 C -0.23 -3.14 4.16 -102.89 -0.43 -3.57 16 10 C 0.59 9.53 7.49 -12.53 -0.09 9.43 16 11 O -0.52 -10.46 16.48 5.27 0.09 -10.37 16 12 N -0.59 -8.95 3.02 -174.30 -0.53 -9.48 16 13 C 0.11 1.32 6.23 -3.52 -0.02 1.30 16 14 C -0.12 -1.49 5.72 -26.79 -0.15 -1.64 16 15 C -0.11 -1.82 2.62 -89.51 -0.23 -2.05 16 16 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 17 C -0.14 -2.41 6.54 -25.15 -0.16 -2.57 16 18 C 0.18 4.14 5.46 -1.91 -0.01 4.13 16 19 N -0.59 -14.53 3.35 -163.18 -0.55 -15.08 16 20 C -0.23 -6.23 9.88 -15.06 -0.15 -6.37 16 21 H 0.08 2.14 7.41 -52.48 -0.39 1.75 16 22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -26.56 10.43 55.49 0.58 -25.98 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.16 3.11 2.74 -68.06 -0.19 2.92 16 29 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 30 C 0.12 2.13 5.65 -4.19 -0.02 2.10 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.99 7.97 -51.92 -0.41 0.58 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 46 H 0.06 1.46 7.19 -51.93 -0.37 1.09 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 1.96 6.75 -51.93 -0.35 1.60 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -32.25 393.73 -9.72 -41.97 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.71 Total: 0.43 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.13 Total: -1.61 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.09 Total: -54.69 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.29 Total: -9.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.25 -9.72 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042156327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.859 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds