Wall clock time and date at job start Wed Apr 1 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33487 * 126.83189 * 2 1 4 4 N 1.20667 * 113.15583 * 180.02562 * 3 2 1 5 5 C 1.30007 * 112.30202 * 0.02562 * 4 3 2 6 6 C 1.50706 * 127.33378 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49668 * 60.02763 * 6 5 4 8 8 C 1.53000 * 60.02940 * 252.51929 * 7 6 5 9 9 C 1.37364 * 126.82618 * 180.31630 * 2 1 3 10 10 C 1.47403 * 128.56756 * 359.97438 * 9 2 1 11 11 O 1.21608 * 119.99680 * 270.16654 * 10 9 2 12 12 N 1.34777 * 120.00067 * 90.16147 * 10 9 2 13 13 C 1.46599 * 119.75287 * 0.02562 * 12 10 9 14 14 C 1.53893 * 110.70533 * 132.25128 * 13 12 10 15 15 C 1.51978 * 107.28857 * 51.81736 * 14 13 12 16 16 H 1.08997 * 111.01962 * 56.51602 * 15 14 13 17 17 C 1.53700 * 115.00137 * 184.55793 * 15 14 13 18 18 C 1.55302 * 101.81563 * 153.46714 * 17 15 14 19 19 N 1.48158 * 107.03928 * 337.54882 * 18 17 15 20 20 C 1.36937 * 126.39845 * 174.96152 * 19 18 17 21 21 H 1.08003 * 120.00136 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99922 * 0.04554 * 20 19 18 23 23 N 1.31620 * 119.99924 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46913 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47018 * 119.99541 * 24 22 20 27 27 H 1.48492 * 109.46766 * 239.99907 * 24 22 20 28 28 C 1.45509 * 107.20607 * 354.99756 * 19 18 17 29 29 H 1.08999 * 109.57201 * 273.37764 * 28 19 18 30 30 C 1.47799 * 119.75058 * 179.73007 * 12 10 9 31 31 H 1.08995 * 109.46702 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47322 * 120.01885 * 1 2 3 33 33 H 1.08998 * 109.46893 * 240.02019 * 1 2 3 34 34 H 1.09000 * 115.55924 * 205.71168 * 6 5 4 35 35 H 1.09002 * 117.49918 * 145.01964 * 7 6 5 36 36 H 1.09002 * 117.49754 * 0.02562 * 7 6 5 37 37 H 1.09008 * 117.49673 * 107.47884 * 8 7 6 38 38 H 1.08999 * 117.49942 * 252.47315 * 8 7 6 39 39 H 1.08998 * 109.23173 * 252.56895 * 13 12 10 40 40 H 1.09001 * 109.22760 * 11.97682 * 13 12 10 41 41 H 1.08999 * 109.88990 * 171.25845 * 14 13 12 42 42 H 1.09003 * 109.89188 * 292.36792 * 14 13 12 43 43 H 1.09005 * 110.95810 * 271.59394 * 17 15 14 44 44 H 1.08997 * 110.96686 * 35.32894 * 17 15 14 45 45 H 1.08998 * 109.91921 * 218.20155 * 18 17 15 46 46 H 1.08996 * 110.08965 * 96.99033 * 18 17 15 47 47 H 0.97002 * 120.00081 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.06675 * 350.47536 * 30 12 10 49 49 H 1.08994 * 110.06069 * 112.04072 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0684 0.0000 4 7 3.4797 0.7831 -0.0005 5 6 3.6747 -0.5022 -0.0014 6 6 4.9965 -1.2261 -0.0028 7 6 5.9426 -0.9715 1.1724 8 6 6.2611 -0.3879 -0.2056 9 6 2.3304 -1.0995 -0.0061 10 6 1.9586 -2.5259 -0.0134 11 8 1.8027 -3.1190 1.0367 12 7 1.7915 -3.1727 -1.1840 13 6 1.9812 -2.4525 -2.4467 14 6 2.8728 -3.2612 -3.4056 15 6 2.2815 -4.6579 -3.5023 16 1 1.2416 -4.6206 -3.8268 17 6 3.1019 -5.6543 -4.3369 18 6 2.6924 -7.0121 -3.7041 19 7 2.2000 -6.7230 -2.3370 20 6 1.6492 -7.6233 -1.4644 21 1 1.3229 -7.2982 -0.4875 22 6 1.5108 -8.9537 -1.8352 23 7 1.9084 -9.3499 -3.0258 24 14 0.7600 -10.1820 -0.6447 25 1 0.3981 -9.4895 0.6181 26 1 -0.4584 -10.7770 -1.2502 27 1 1.7441 -11.2557 -0.3554 28 6 2.4103 -5.3037 -2.0949 29 1 3.4180 -5.1441 -1.7114 30 6 1.4246 -4.6044 -1.1849 31 1 -0.3632 1.0276 -0.0005 32 1 -0.3634 -0.5141 -0.8898 33 1 -0.3633 -0.5135 0.8902 34 1 4.9831 -2.2288 -0.4301 35 1 6.5517 -1.8067 1.5182 36 1 5.6087 -0.2808 1.9467 37 1 6.1365 0.6870 -0.3380 38 1 7.0800 -0.8388 -0.7661 39 1 1.0108 -2.2851 -2.9139 40 1 2.4527 -1.4909 -2.2441 41 1 2.8796 -2.7925 -4.3897 42 1 3.8879 -3.3145 -3.0121 43 1 2.8153 -5.6116 -5.3877 44 1 4.1706 -5.4753 -4.2183 45 1 3.5564 -7.6747 -3.6553 46 1 1.9014 -7.4763 -4.2932 47 1 1.8113 -10.2795 -3.2851 48 1 1.4969 -5.0097 -0.1756 49 1 0.4121 -4.7307 -1.5682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042156327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:47 Heat of formation + Delta-G solvation = 66.606077 kcal Electronic energy + Delta-G solvation = -31697.506524 eV Core-core repulsion = 27628.859479 eV Total energy + Delta-G solvation = -4068.647045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -45.98570 -41.51496 -39.74051 -38.51580 -36.91492 -34.94467 -34.58069 -33.91538 -32.92738 -31.11359 -30.21976 -28.93583 -26.64899 -26.46110 -25.32859 -24.17172 -23.60717 -23.38112 -21.82090 -21.52856 -20.74465 -20.09256 -19.02045 -18.74318 -18.42373 -17.73806 -17.17021 -16.82159 -16.42439 -16.31580 -15.82507 -15.72301 -15.57956 -15.20449 -14.87967 -14.47380 -14.41678 -14.13812 -13.92051 -13.86165 -13.70391 -13.56548 -13.14741 -13.12759 -13.04537 -12.78457 -12.65369 -12.54686 -12.54044 -12.31788 -12.14683 -11.98923 -11.78957 -11.56026 -11.49603 -11.41356 -11.30061 -11.05777 -10.73747 -10.58061 -10.38357 -9.82295 -8.91449 -7.86782 -5.21661 0.24308 0.71100 1.20956 1.43886 1.44922 1.55003 1.65329 2.04242 2.48789 2.74919 2.83396 3.18436 3.31850 3.41725 3.53826 3.74025 3.78228 3.85142 3.92164 3.94842 3.95558 4.00433 4.23945 4.25437 4.29130 4.35796 4.48213 4.57130 4.59994 4.62569 4.64161 4.69654 4.70380 4.79490 4.86051 4.87720 4.89504 4.99049 5.07719 5.07933 5.12270 5.13561 5.21316 5.33699 5.47951 5.57001 5.66300 5.78708 6.18543 6.21996 6.91643 7.07818 7.14128 7.75925 8.42619 9.24206 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.003211 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.232035 B = 8719.076739 C = 8987.835697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.037 3.963 3 O 0.100 5.900 4 N -0.365 5.365 5 C 0.086 3.914 6 C -0.115 4.115 7 C -0.159 4.159 8 C -0.138 4.138 9 C -0.264 4.264 10 C 0.600 3.400 11 O -0.575 6.575 12 N -0.587 5.587 13 C 0.108 3.892 14 C -0.109 4.109 15 C -0.094 4.094 16 H 0.081 0.919 17 C -0.121 4.121 18 C 0.180 3.820 19 N -0.612 5.612 20 C -0.236 4.236 21 H 0.076 0.924 22 C -0.060 4.060 23 N -0.947 5.947 24 Si 0.970 3.030 25 H -0.271 1.271 26 H -0.288 1.288 27 H -0.293 1.293 28 C 0.149 3.851 29 H 0.006 0.994 30 C 0.130 3.870 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.068 0.932 45 H -0.002 1.002 46 H 0.025 0.975 47 H 0.247 0.753 48 H 0.060 0.940 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 24.064 -0.745 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 O 0.040 5.960 4 N -0.072 5.072 5 C -0.075 4.075 6 C -0.134 4.134 7 C -0.197 4.197 8 C -0.176 4.176 9 C -0.272 4.272 10 C 0.387 3.613 11 O -0.454 6.454 12 N -0.319 5.319 13 C -0.013 4.013 14 C -0.147 4.147 15 C -0.114 4.114 16 H 0.100 0.900 17 C -0.159 4.159 18 C 0.056 3.944 19 N -0.337 5.337 20 C -0.365 4.365 21 H 0.094 0.906 22 C -0.253 4.253 23 N -0.596 5.596 24 Si 0.798 3.202 25 H -0.196 1.196 26 H -0.215 1.215 27 H -0.220 1.220 28 C 0.041 3.959 29 H 0.024 0.976 30 C 0.006 3.994 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.017 0.983 46 H 0.043 0.957 47 H 0.056 0.944 48 H 0.078 0.922 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.061 24.607 -0.203 24.694 hybrid contribution -0.523 -2.423 0.855 2.622 sum 1.538 22.184 0.652 22.247 Atomic orbital electron populations 1.20728 0.80407 1.07271 1.05415 1.25129 0.97146 0.83888 0.96473 1.84530 1.10853 1.32853 1.67811 1.73524 0.96452 1.16029 1.21168 1.23870 0.94521 0.88614 1.00506 1.20340 0.85385 0.99788 1.07921 1.23109 1.00826 1.03955 0.91787 1.23094 0.95951 0.99761 0.98744 1.21579 0.93679 0.94295 1.17621 1.17230 0.76028 0.84799 0.83285 1.90801 1.52925 1.68625 1.33071 1.48207 1.67024 1.10178 1.06447 1.21974 1.01664 0.94943 0.82750 1.21785 0.98598 0.93590 1.00762 1.22185 1.00171 0.94506 0.94514 0.90034 1.22584 0.99495 0.94291 0.99541 1.21368 0.95577 0.93212 0.84248 1.44430 1.71828 1.03284 1.14150 1.19348 1.32274 0.89236 0.95655 0.90597 1.25522 1.02419 0.98712 0.98643 1.70150 1.53564 1.15537 1.20372 0.85137 0.77479 0.79042 0.78499 1.19566 1.21462 1.22030 1.21005 0.94929 0.84451 0.95544 0.97648 1.21300 0.98676 0.78853 1.00527 0.86184 0.87189 0.88765 0.86336 0.86632 0.89014 0.88005 0.85823 0.88882 0.89130 0.86910 0.91790 0.89466 0.91309 0.98339 0.95694 0.94377 0.92192 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.33 71.24 0.74 -0.18 16 2 C 0.04 0.72 7.55 25.48 0.19 0.91 16 3 O 0.10 2.07 11.06 77.03 0.85 2.93 16 4 N -0.37 -8.66 11.71 -44.77 -0.52 -9.18 16 5 C 0.09 2.14 6.94 45.16 0.31 2.46 16 6 C -0.12 -2.61 6.32 -11.51 -0.07 -2.68 16 7 C -0.16 -3.11 10.23 30.60 0.31 -2.79 16 8 C -0.14 -2.37 10.17 30.62 0.31 -2.05 16 9 C -0.26 -6.75 4.16 -18.74 -0.08 -6.83 16 10 C 0.60 19.09 7.49 86.66 0.65 19.74 16 11 O -0.57 -23.66 16.48 -4.06 -0.07 -23.73 16 12 N -0.59 -17.13 3.02 -823.62 -2.49 -19.61 16 13 C 0.11 2.22 6.23 86.66 0.54 2.76 16 14 C -0.11 -2.33 5.72 30.56 0.17 -2.15 16 15 C -0.09 -2.86 2.62 -10.07 -0.03 -2.89 16 16 H 0.08 2.48 8.13 -2.39 -0.02 2.46 16 17 C -0.12 -4.07 6.54 31.62 0.21 -3.86 16 18 C 0.18 8.70 5.46 86.85 0.47 9.18 16 19 N -0.61 -31.08 3.35 -670.17 -2.24 -33.33 16 20 C -0.24 -13.32 9.88 84.03 0.83 -12.49 16 21 H 0.08 4.23 7.41 -2.91 -0.02 4.21 16 22 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 23 N -0.95 -56.82 10.43 21.65 0.23 -56.59 16 24 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 C 0.15 5.96 2.74 45.44 0.12 6.08 16 29 H 0.01 0.26 7.93 -2.39 -0.02 0.24 16 30 C 0.13 4.81 5.65 85.57 0.48 5.30 16 31 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.77 7.97 -2.38 -0.02 1.75 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.67 6.17 -2.39 -0.01 1.65 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.46 7.98 -2.39 -0.02 1.44 16 43 H 0.09 2.49 8.14 -2.38 -0.02 2.48 16 44 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 45 H 0.00 -0.09 7.77 -2.39 -0.02 -0.11 16 46 H 0.02 1.34 7.19 -2.39 -0.02 1.32 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.06 2.63 6.75 -2.39 -0.02 2.61 16 49 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -75.08 393.73 4.37 -70.71 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.95 Total: 12.62 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.64 Total: 7.55 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.03 Total: -118.72 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.79 Total: -20.81 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.08 4.37 -70.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042156327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.314 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds