Wall clock time and date at job start Wed Apr 1 2020 03:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38356 * 119.40648 * 2 1 4 4 C 1.38343 * 119.45466 * 179.76540 * 3 2 1 5 5 C 1.50702 * 120.82337 * 180.24895 * 4 3 2 6 6 C 1.39988 * 118.34955 * 0.49845 * 4 3 2 7 7 C 1.47524 * 120.59184 * 179.77977 * 6 4 3 8 8 O 1.21586 * 120.00315 * 269.71491 * 7 6 4 9 9 N 1.34780 * 119.99662 * 89.72104 * 7 6 4 10 10 C 1.47148 * 121.22320 * 0.02562 * 9 7 6 11 11 C 1.52842 * 107.97492 * 122.68166 * 10 9 7 12 12 C 1.53089 * 110.58766 * 57.34535 * 11 10 9 13 13 H 1.08991 * 112.49217 * 70.57154 * 12 11 10 14 14 C 1.56486 * 106.41652 * 195.41515 * 12 11 10 15 15 C 1.54502 * 102.40255 * 78.36475 * 14 12 11 16 16 N 1.47431 * 107.29924 * 22.90559 * 15 14 12 17 17 C 1.36935 * 126.05864 * 181.51936 * 16 15 14 18 18 H 1.08001 * 120.00388 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00062 * 0.02653 * 17 16 15 20 20 N 1.31621 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00138 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46571 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47098 * 119.99686 * 21 19 17 24 24 H 1.48493 * 109.46861 * 239.99766 * 21 19 17 25 25 C 1.46474 * 107.88307 * 1.51946 * 16 15 14 26 26 H 1.08997 * 108.42382 * 89.26430 * 25 16 15 27 27 C 1.46767 * 121.21871 * 179.97438 * 9 7 6 28 28 C 1.40269 * 118.80520 * 359.49933 * 6 4 3 29 29 O 1.35431 * 119.80139 * 180.23107 * 28 6 4 30 30 N 1.31885 * 119.40774 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47466 * 269.97932 * 1 2 3 32 32 H 1.09000 * 109.47517 * 29.97781 * 1 2 3 33 33 H 1.09008 * 109.47197 * 149.98335 * 1 2 3 34 34 H 1.07999 * 120.27162 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.47520 * 270.25133 * 5 4 3 36 36 H 1.09005 * 109.46906 * 30.25080 * 5 4 3 37 37 H 1.08998 * 109.47056 * 150.24960 * 5 4 3 38 38 H 1.09004 * 109.76244 * 242.29621 * 10 9 7 39 39 H 1.08999 * 109.76258 * 3.05980 * 10 9 7 40 40 H 1.09005 * 109.25136 * 177.63023 * 11 10 9 41 41 H 1.08999 * 109.25207 * 297.09447 * 11 10 9 42 42 H 1.08999 * 110.91583 * 320.13507 * 14 12 11 43 43 H 1.08999 * 110.84603 * 196.55659 * 14 12 11 44 44 H 1.09002 * 109.90277 * 263.43442 * 15 14 12 45 45 H 1.09001 * 109.90413 * 142.37435 * 15 14 12 46 46 H 0.96996 * 119.99756 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.22684 * 112.24366 * 27 9 7 48 48 H 1.09001 * 109.22509 * 352.88674 * 27 9 7 49 49 H 0.96704 * 113.99815 * 89.99832 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.3408 2.5013 0.0107 6 6 4.2355 -0.0249 -0.0009 7 6 5.7097 -0.0814 -0.0009 8 8 6.3172 -0.1048 -1.0539 9 7 6.3830 -0.1072 1.1663 10 6 5.6751 -0.0806 2.4560 11 6 6.0893 -1.3210 3.2471 12 6 7.6085 -1.3589 3.4321 13 1 7.9637 -0.5942 4.1227 14 6 7.9633 -2.8159 3.8796 15 6 7.9065 -3.5954 2.5468 16 7 8.1104 -2.6206 1.4597 17 6 8.1026 -2.8958 0.1184 18 1 8.2637 -2.1026 -0.5967 19 6 7.8875 -4.1944 -0.3225 20 7 7.6916 -5.1613 0.5489 21 14 7.8761 -4.5698 -2.1524 22 1 8.1181 -3.3191 -2.9156 23 1 8.9441 -5.5540 -2.4625 24 1 6.5567 -5.1345 -2.5336 25 6 8.3227 -1.3055 2.0688 26 1 9.3893 -1.1802 2.2548 27 6 7.8492 -0.1639 1.1976 28 6 3.4757 -1.2040 -0.0008 29 8 4.0991 -2.4064 -0.0017 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8899 -0.5141 34 1 1.6410 2.1375 0.0004 35 1 4.5265 2.8182 -1.0155 36 1 3.7621 3.2665 0.5282 37 1 5.2914 2.3557 0.5237 38 1 5.9498 0.8178 3.0089 39 1 4.5985 -0.0946 2.2859 40 1 5.6085 -1.3007 4.2252 41 1 5.7710 -2.2136 2.7086 42 1 7.2235 -3.1980 4.5830 43 1 8.9643 -2.8568 4.3091 44 1 6.9334 -4.0743 2.4382 45 1 8.6949 -4.3478 2.5231 46 1 7.5417 -6.0687 0.2408 47 1 8.2363 0.7746 1.5945 48 1 8.2246 -0.3062 0.1842 49 1 4.2808 -2.7558 0.8815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042175040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:40 Heat of formation + Delta-G solvation = -5.335144 kcal Electronic energy + Delta-G solvation = -33097.045922 eV Core-core repulsion = 29025.279271 eV Total energy + Delta-G solvation = -4071.766651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.96013 -39.57697 -37.91704 -37.07583 -34.99523 -34.18679 -32.80576 -31.77318 -31.17792 -29.49950 -28.41634 -28.12861 -27.53636 -24.65825 -24.13256 -22.96258 -22.58102 -21.59381 -20.05318 -19.88518 -18.47649 -18.15461 -17.20128 -17.07942 -16.52290 -15.89996 -15.30298 -14.90837 -14.64612 -14.46224 -14.16376 -14.03741 -13.96301 -13.57714 -13.45750 -13.31078 -13.05170 -12.88876 -12.77295 -12.52927 -12.49927 -12.03447 -11.98827 -11.89032 -11.62639 -11.40366 -11.37759 -11.26046 -10.97093 -10.75761 -10.64781 -10.05421 -9.95406 -9.87790 -9.76054 -9.65616 -9.52880 -9.46531 -9.20776 -8.68345 -8.48166 -8.18188 -6.73355 -5.59671 -2.91480 0.83901 1.09566 2.95075 3.30479 3.50634 3.53905 3.62139 3.67526 3.70742 4.43528 4.44788 4.64121 4.70379 4.95449 4.99738 5.05749 5.12094 5.23016 5.25311 5.33820 5.38909 5.42584 5.46787 5.51663 5.53621 5.65471 5.70373 5.72450 5.75625 5.88295 5.90500 5.94804 5.99940 6.07671 6.10713 6.22529 6.28024 6.36664 6.42986 6.48041 6.59673 6.70906 6.87026 7.05093 7.61716 7.65944 7.68902 7.81496 7.95704 7.97302 8.33739 8.59273 9.34163 9.94995 10.57454 11.52559 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.005100 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.154311 B = 5489.051278 C = 6403.260460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.193 4.193 4 C 0.003 3.997 5 C -0.120 4.120 6 C -0.190 4.190 7 C 0.582 3.418 8 O -0.519 6.519 9 N -0.587 5.587 10 C 0.112 3.888 11 C -0.122 4.122 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.143 4.143 15 C 0.178 3.822 16 N -0.587 5.587 17 C -0.211 4.211 18 H 0.081 0.919 19 C -0.002 4.002 20 N -0.925 5.925 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.154 3.846 26 H 0.027 0.973 27 C 0.114 3.886 28 C 0.360 3.640 29 O -0.458 6.458 30 N -0.507 5.507 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.041 0.959 46 H 0.248 0.752 47 H 0.055 0.945 48 H 0.096 0.904 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 15.602 8.181 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.023 3.977 3 C -0.213 4.213 4 C -0.005 4.005 5 C -0.176 4.176 6 C -0.197 4.197 7 C 0.368 3.632 8 O -0.394 6.394 9 N -0.320 5.320 10 C -0.011 4.011 11 C -0.160 4.160 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.182 4.182 15 C 0.054 3.946 16 N -0.313 5.313 17 C -0.339 4.339 18 H 0.098 0.902 19 C -0.197 4.197 20 N -0.574 5.574 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.218 1.218 25 C 0.045 3.955 26 H 0.044 0.956 27 C -0.009 4.009 28 C 0.181 3.819 29 O -0.266 6.266 30 N -0.228 5.228 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.983 14.617 6.835 19.519 hybrid contribution 0.466 0.088 -0.441 0.647 sum -10.517 14.705 6.394 19.176 Atomic orbital electron populations 1.20763 0.88469 1.03692 1.03259 1.21130 0.96823 0.87226 0.92533 1.21674 0.93564 0.99365 1.06687 1.20223 0.93623 0.94124 0.92572 1.20887 1.00042 0.93102 1.03592 1.20934 0.95539 0.93990 1.09256 1.17556 0.85569 0.76256 0.83827 1.90806 1.68814 1.48894 1.30847 1.47770 1.07166 1.72291 1.04796 1.21618 0.96231 0.98699 0.84592 1.21840 0.96496 0.98468 0.99221 1.22450 0.94712 0.97406 0.97542 0.90626 1.23238 0.99870 0.95339 0.99726 1.21208 1.00607 0.90367 0.82439 1.44288 1.84150 1.00728 1.02111 1.19029 1.41025 0.93301 0.80557 0.90170 1.24621 1.02088 0.95804 0.97214 1.69953 1.56189 0.99994 1.31258 0.86149 0.76998 0.77816 0.85660 1.20363 1.22228 1.21842 1.20683 0.96259 0.87774 0.90759 0.95581 1.21428 0.78595 0.97340 1.03553 1.19177 0.86087 0.85269 0.91383 1.84856 1.76116 1.31633 1.33973 1.67112 1.09406 1.30223 1.16075 0.90108 0.90479 0.90223 0.84208 0.89832 0.90452 0.90800 0.91584 0.91234 0.91976 0.90401 0.92312 0.92700 0.93742 0.94098 0.94150 0.92648 0.88548 0.73329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 36.00 0.37 -0.52 16 2 C 0.16 2.01 6.78 -82.53 -0.56 1.45 16 3 C -0.19 -2.13 9.41 -39.50 -0.37 -2.50 16 4 C 0.00 0.03 5.95 -103.93 -0.62 -0.58 16 5 C -0.12 -1.24 9.69 36.01 0.35 -0.90 16 6 C -0.19 -3.22 3.68 -104.69 -0.39 -3.60 16 7 C 0.58 11.29 5.32 -12.47 -0.07 11.23 16 8 O -0.52 -12.44 16.56 5.29 0.09 -12.35 16 9 N -0.59 -9.97 2.97 -175.35 -0.52 -10.49 16 10 C 0.11 1.49 6.35 -3.77 -0.02 1.47 16 11 C -0.12 -1.75 5.05 -26.77 -0.14 -1.88 16 12 C -0.10 -1.57 3.68 -88.18 -0.32 -1.89 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.14 -2.46 6.36 -24.07 -0.15 -2.61 16 15 C 0.18 4.08 4.60 -2.74 -0.01 4.07 16 16 N -0.59 -14.05 3.20 -164.45 -0.53 -14.57 16 17 C -0.21 -5.85 9.70 -15.06 -0.15 -6.00 16 18 H 0.08 2.33 6.51 -52.49 -0.34 1.99 16 19 C 0.00 -0.05 5.49 -17.43 -0.10 -0.14 16 20 N -0.93 -27.21 10.38 55.49 0.58 -26.63 16 21 Si 0.90 24.20 29.55 -169.99 -5.02 19.18 16 22 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.29 -8.01 7.11 56.52 0.40 -7.60 16 25 C 0.15 2.94 2.97 -68.32 -0.20 2.73 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 C 0.11 2.05 5.68 -4.80 -0.03 2.02 16 28 C 0.36 6.51 7.71 -16.61 -0.13 6.38 16 29 O -0.46 -9.39 13.02 -17.98 -0.23 -9.63 16 30 N -0.51 -8.26 10.28 -9.21 -0.09 -8.35 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.07 0.84 7.19 -51.93 -0.37 0.47 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.36 6.85 -51.93 -0.36 1.00 16 42 H 0.06 0.91 7.98 -51.93 -0.41 0.49 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 1.12 7.04 -51.93 -0.37 0.76 16 45 H 0.04 1.07 7.56 -51.93 -0.39 0.68 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 2.08 5.53 -51.93 -0.29 1.80 16 49 H 0.41 7.19 9.06 45.56 0.41 7.60 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -35.30 385.73 -9.11 -44.41 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.65 Total: 3.91 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.54 Total: 8.72 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.57 Total: -60.05 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.15 Total: -21.98 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.02 Total: 19.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.30 -9.11 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042175040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.074 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds