Wall clock time and date at job start Wed Apr 1 2020 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38356 * 119.40648 * 2 1 4 4 C 1.38343 * 119.45466 * 179.76540 * 3 2 1 5 5 C 1.50702 * 120.82337 * 180.24895 * 4 3 2 6 6 C 1.39988 * 118.34955 * 0.49845 * 4 3 2 7 7 C 1.47524 * 120.59184 * 179.77977 * 6 4 3 8 8 O 1.21586 * 120.00315 * 269.71491 * 7 6 4 9 9 N 1.34780 * 119.99662 * 89.72104 * 7 6 4 10 10 C 1.47148 * 121.22320 * 0.02562 * 9 7 6 11 11 C 1.52842 * 107.97492 * 122.68166 * 10 9 7 12 12 C 1.53089 * 110.58766 * 57.34535 * 11 10 9 13 13 H 1.08991 * 112.49217 * 70.57154 * 12 11 10 14 14 C 1.56486 * 106.41652 * 195.41515 * 12 11 10 15 15 C 1.54502 * 102.40255 * 78.36475 * 14 12 11 16 16 N 1.47431 * 107.29924 * 22.90559 * 15 14 12 17 17 C 1.36935 * 126.05864 * 181.51936 * 16 15 14 18 18 H 1.08001 * 120.00388 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00062 * 0.02653 * 17 16 15 20 20 N 1.31621 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00138 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46571 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47098 * 119.99686 * 21 19 17 24 24 H 1.48493 * 109.46861 * 239.99766 * 21 19 17 25 25 C 1.46474 * 107.88307 * 1.51946 * 16 15 14 26 26 H 1.08997 * 108.42382 * 89.26430 * 25 16 15 27 27 C 1.46767 * 121.21871 * 179.97438 * 9 7 6 28 28 C 1.40269 * 118.80520 * 359.49933 * 6 4 3 29 29 O 1.35431 * 119.80139 * 180.23107 * 28 6 4 30 30 N 1.31885 * 119.40774 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47466 * 269.97932 * 1 2 3 32 32 H 1.09000 * 109.47517 * 29.97781 * 1 2 3 33 33 H 1.09008 * 109.47197 * 149.98335 * 1 2 3 34 34 H 1.07999 * 120.27162 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.47520 * 270.25133 * 5 4 3 36 36 H 1.09005 * 109.46906 * 30.25080 * 5 4 3 37 37 H 1.08998 * 109.47056 * 150.24960 * 5 4 3 38 38 H 1.09004 * 109.76244 * 242.29621 * 10 9 7 39 39 H 1.08999 * 109.76258 * 3.05980 * 10 9 7 40 40 H 1.09005 * 109.25136 * 177.63023 * 11 10 9 41 41 H 1.08999 * 109.25207 * 297.09447 * 11 10 9 42 42 H 1.08999 * 110.91583 * 320.13507 * 14 12 11 43 43 H 1.08999 * 110.84603 * 196.55659 * 14 12 11 44 44 H 1.09002 * 109.90277 * 263.43442 * 15 14 12 45 45 H 1.09001 * 109.90413 * 142.37435 * 15 14 12 46 46 H 0.96996 * 119.99756 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.22684 * 112.24366 * 27 9 7 48 48 H 1.09001 * 109.22509 * 352.88674 * 27 9 7 49 49 H 0.96704 * 113.99815 * 89.99832 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0049 5 6 4.3408 2.5013 0.0107 6 6 4.2355 -0.0249 -0.0009 7 6 5.7097 -0.0814 -0.0009 8 8 6.3172 -0.1048 -1.0539 9 7 6.3830 -0.1072 1.1663 10 6 5.6751 -0.0806 2.4560 11 6 6.0893 -1.3210 3.2471 12 6 7.6085 -1.3589 3.4321 13 1 7.9637 -0.5942 4.1227 14 6 7.9633 -2.8159 3.8796 15 6 7.9065 -3.5954 2.5468 16 7 8.1104 -2.6206 1.4597 17 6 8.1026 -2.8958 0.1184 18 1 8.2637 -2.1026 -0.5967 19 6 7.8875 -4.1944 -0.3225 20 7 7.6916 -5.1613 0.5489 21 14 7.8761 -4.5698 -2.1524 22 1 8.1181 -3.3191 -2.9156 23 1 8.9441 -5.5540 -2.4625 24 1 6.5567 -5.1345 -2.5336 25 6 8.3227 -1.3055 2.0688 26 1 9.3893 -1.1802 2.2548 27 6 7.8492 -0.1639 1.1976 28 6 3.4757 -1.2040 -0.0008 29 8 4.0991 -2.4064 -0.0017 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8899 -0.5141 34 1 1.6410 2.1375 0.0004 35 1 4.5265 2.8182 -1.0155 36 1 3.7621 3.2665 0.5282 37 1 5.2914 2.3557 0.5237 38 1 5.9498 0.8178 3.0089 39 1 4.5985 -0.0946 2.2859 40 1 5.6085 -1.3007 4.2252 41 1 5.7710 -2.2136 2.7086 42 1 7.2235 -3.1980 4.5830 43 1 8.9643 -2.8568 4.3091 44 1 6.9334 -4.0743 2.4382 45 1 8.6949 -4.3478 2.5231 46 1 7.5417 -6.0687 0.2408 47 1 8.2363 0.7746 1.5945 48 1 8.2246 -0.3062 0.1842 49 1 4.2808 -2.7558 0.8815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042175040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:39 Heat of formation + Delta-G solvation = -33.216123 kcal Electronic energy + Delta-G solvation = -33098.254932 eV Core-core repulsion = 29025.279271 eV Total energy + Delta-G solvation = -4072.975661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.17976 -40.93140 -39.43995 -38.42976 -36.56684 -35.23830 -34.63069 -32.93547 -32.71794 -30.96683 -30.07969 -29.25601 -28.39965 -26.48745 -25.65371 -24.19346 -23.92604 -22.66087 -21.72970 -21.27475 -19.92141 -19.49627 -18.56463 -18.42507 -18.15757 -17.34716 -16.83118 -16.54247 -16.12022 -15.81735 -15.69297 -15.41154 -15.21210 -14.92853 -14.62581 -14.26519 -14.20857 -14.13722 -13.95942 -13.87577 -13.71444 -13.23197 -13.21665 -13.13894 -13.03716 -12.95027 -12.77448 -12.68544 -12.58949 -12.57555 -12.36203 -12.06501 -11.66769 -11.42820 -11.34163 -11.22134 -11.07443 -10.66081 -10.58321 -10.44586 -9.79712 -9.57114 -8.77922 -7.84028 -5.11420 -0.26411 0.04513 1.29620 1.35615 1.43879 1.51133 2.05363 2.36010 2.46887 2.56975 3.33903 3.36933 3.53287 3.57559 3.66467 3.84326 3.88778 4.00562 4.08739 4.20529 4.25924 4.30663 4.45912 4.46902 4.51869 4.56250 4.59300 4.65829 4.66849 4.75494 4.82534 4.82713 4.87601 4.96626 4.99831 5.01947 5.11816 5.15098 5.17613 5.19851 5.30820 5.53938 5.55542 5.61488 5.67252 5.74593 5.85167 6.24766 6.36667 6.46069 6.84247 7.16705 7.18212 7.85396 8.46716 9.26410 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.005100 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.154311 B = 5489.051278 C = 6403.260460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.155 3.845 3 C -0.170 4.170 4 C 0.004 3.996 5 C -0.117 4.117 6 C -0.210 4.210 7 C 0.579 3.421 8 O -0.584 6.584 9 N -0.583 5.583 10 C 0.112 3.888 11 C -0.120 4.120 12 C -0.082 4.082 13 H 0.126 0.874 14 C -0.128 4.128 15 C 0.186 3.814 16 N -0.603 5.603 17 C -0.191 4.191 18 H 0.060 0.940 19 C -0.052 4.052 20 N -0.943 5.943 21 Si 0.941 3.059 22 H -0.288 1.288 23 H -0.286 1.286 24 H -0.303 1.303 25 C 0.141 3.859 26 H 0.030 0.970 27 C 0.116 3.884 28 C 0.329 3.671 29 O -0.493 6.493 30 N -0.534 5.534 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.192 0.808 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.010 0.990 45 H -0.003 1.003 46 H 0.241 0.759 47 H 0.101 0.899 48 H 0.050 0.950 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 20.021 11.226 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.017 3.983 3 C -0.189 4.189 4 C -0.004 4.004 5 C -0.173 4.173 6 C -0.217 4.217 7 C 0.367 3.633 8 O -0.464 6.464 9 N -0.314 5.314 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.101 4.101 13 H 0.144 0.856 14 C -0.167 4.167 15 C 0.061 3.939 16 N -0.328 5.328 17 C -0.321 4.321 18 H 0.078 0.922 19 C -0.245 4.245 20 N -0.594 5.594 21 Si 0.774 3.226 22 H -0.214 1.214 23 H -0.213 1.213 24 H -0.231 1.231 25 C 0.034 3.966 26 H 0.047 0.953 27 C -0.007 4.007 28 C 0.151 3.849 29 O -0.301 6.301 30 N -0.255 5.255 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.209 0.791 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.028 0.972 45 H 0.015 0.985 46 H 0.050 0.950 47 H 0.118 0.882 48 H 0.068 0.932 49 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -13.132 19.073 9.941 25.200 hybrid contribution 1.057 -1.161 -1.372 2.085 sum -12.075 17.912 8.569 23.240 Atomic orbital electron populations 1.20923 0.85303 1.04791 1.04871 1.21992 0.98802 0.86762 0.90766 1.22192 0.92623 1.00736 1.03376 1.20642 0.94796 0.93614 0.91359 1.20974 0.99881 0.92573 1.03879 1.20818 0.93838 0.95290 1.11726 1.18023 0.86720 0.75065 0.83509 1.90759 1.70352 1.52088 1.33168 1.47891 1.06894 1.70794 1.05793 1.21906 0.96403 0.99962 0.82669 1.21827 0.95929 0.97160 1.00851 1.22494 0.94996 0.97289 0.95332 0.85636 1.23093 1.01579 0.95640 0.96343 1.20974 0.97043 0.90348 0.85555 1.44427 1.83628 1.03586 1.01115 1.18951 1.38332 0.92302 0.82556 0.92191 1.25057 1.03929 0.96338 0.99156 1.70099 1.58114 0.99633 1.31562 0.85534 0.76444 0.77096 0.83577 1.21388 1.21287 1.23097 1.21017 0.97056 0.85587 0.92908 0.95273 1.21338 0.79547 0.98884 1.00954 1.19305 0.87017 0.84539 0.94062 1.84822 1.77011 1.33679 1.34595 1.67104 1.08575 1.32604 1.17207 0.88036 0.87077 0.91435 0.79093 0.90109 0.86121 0.91958 0.87198 0.90624 0.87944 0.94616 0.89932 0.91363 0.97175 0.98483 0.94979 0.88159 0.93187 0.73415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.16 71.23 0.72 -0.61 16 2 C 0.15 3.46 6.78 42.58 0.29 3.75 16 3 C -0.17 -3.02 9.41 22.32 0.21 -2.81 16 4 C 0.00 0.09 5.95 -19.41 -0.12 -0.02 16 5 C -0.12 -2.01 9.69 71.24 0.69 -1.32 16 6 C -0.21 -7.15 3.68 -19.91 -0.07 -7.22 16 7 C 0.58 23.23 5.32 86.69 0.46 23.69 16 8 O -0.58 -29.94 16.56 -3.99 -0.07 -30.00 16 9 N -0.58 -19.47 2.97 -826.94 -2.46 -21.92 16 10 C 0.11 2.63 6.35 86.20 0.55 3.18 16 11 C -0.12 -3.07 5.05 30.57 0.15 -2.91 16 12 C -0.08 -2.23 3.68 -9.21 -0.03 -2.26 16 13 H 0.13 2.37 8.14 -2.39 -0.02 2.36 16 14 C -0.13 -4.14 6.36 32.32 0.21 -3.93 16 15 C 0.19 8.83 4.60 86.71 0.40 9.23 16 16 N -0.60 -30.00 3.20 -674.19 -2.15 -32.15 16 17 C -0.19 -11.30 9.70 84.03 0.81 -10.48 16 18 H 0.06 3.76 6.51 -2.91 -0.02 3.74 16 19 C -0.05 -3.19 5.49 84.86 0.47 -2.73 16 20 N -0.94 -59.07 10.38 21.65 0.22 -58.85 16 21 Si 0.94 52.92 29.55 68.60 2.03 54.94 16 22 H -0.29 -16.46 7.11 99.48 0.71 -15.75 16 23 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 24 H -0.30 -17.44 7.11 99.48 0.71 -16.74 16 25 C 0.14 5.27 2.97 44.75 0.13 5.40 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 C 0.12 4.13 5.68 85.75 0.49 4.62 16 28 C 0.33 12.39 7.71 85.13 0.66 13.05 16 29 O -0.49 -22.14 13.02 -87.27 -1.14 -23.28 16 30 N -0.53 -17.43 10.28 -296.06 -3.04 -20.47 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 0.73 8.07 -2.39 -0.02 0.72 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.02 8.10 -2.38 -0.02 1.00 16 37 H 0.06 1.24 7.19 -2.39 -0.02 1.22 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.74 6.35 -2.39 -0.02 1.73 16 40 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.03 1.24 6.85 -2.39 -0.02 1.22 16 42 H 0.08 2.31 7.98 -2.39 -0.02 2.29 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.01 0.54 7.04 -2.39 -0.02 0.52 16 45 H 0.00 -0.17 7.56 -2.39 -0.02 -0.19 16 46 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.05 2.27 5.53 -2.39 -0.01 2.26 16 49 H 0.41 16.29 9.06 -74.05 -0.67 15.62 16 Total: -1.00 -89.22 385.73 -0.28 -89.50 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.31 Total: 13.63 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 6.01 Total: 28.60 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -7.43 Total: -133.39 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -1.20 Total: -53.28 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 2.03 Total: 54.94 kcal Total: -89.22 -0.28 -89.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042175040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.285 kcal (2) G-P(sol) polarization free energy of solvation -89.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds