Wall clock time and date at job start Wed Apr 1 2020 03:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.40545 * 2 1 4 4 C 1.38346 * 119.45414 * 179.72110 * 3 2 1 5 5 C 1.50698 * 120.82637 * 180.25361 * 4 3 2 6 6 C 1.39987 * 118.34631 * 0.49457 * 4 3 2 7 7 C 1.47527 * 120.59204 * 179.78319 * 6 4 3 8 8 O 1.21595 * 119.99997 * 269.71987 * 7 6 4 9 9 N 1.34776 * 120.00514 * 89.72173 * 7 6 4 10 10 C 1.47150 * 121.20140 * 0.02562 * 9 7 6 11 11 C 1.52837 * 107.93978 * 237.33542 * 10 9 7 12 12 C 1.53097 * 110.57240 * 302.62636 * 11 10 9 13 13 H 1.08993 * 113.05884 * 289.01274 * 12 11 10 14 14 C 1.55542 * 106.72053 * 164.99383 * 12 11 10 15 15 C 1.54501 * 102.21180 * 282.27361 * 14 12 11 16 16 N 1.47436 * 107.14625 * 336.67130 * 15 14 12 17 17 C 1.36942 * 126.05726 * 178.39238 * 16 15 14 18 18 H 1.07998 * 119.99799 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99987 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00345 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47072 * 89.99988 * 21 19 17 23 23 H 1.48493 * 109.47148 * 210.00422 * 21 19 17 24 24 H 1.48505 * 109.47200 * 330.00363 * 21 19 17 25 25 C 1.46460 * 107.88277 * 358.37447 * 16 15 14 26 26 H 1.08995 * 108.42016 * 270.76364 * 25 16 15 27 27 C 1.46756 * 121.21823 * 179.97438 * 9 7 6 28 28 C 1.40277 * 118.80701 * 359.50786 * 6 4 3 29 29 O 1.35430 * 119.79681 * 180.22817 * 28 6 4 30 30 N 1.31881 * 119.40656 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47491 * 270.02239 * 1 2 3 32 32 H 1.09004 * 109.46998 * 30.02349 * 1 2 3 33 33 H 1.08997 * 109.47132 * 150.02099 * 1 2 3 34 34 H 1.08001 * 120.27637 * 359.97438 * 3 2 1 35 35 H 1.09007 * 109.47169 * 270.25084 * 5 4 3 36 36 H 1.09004 * 109.47049 * 30.24100 * 5 4 3 37 37 H 1.08997 * 109.47605 * 150.24611 * 5 4 3 38 38 H 1.09001 * 109.78899 * 117.71851 * 10 9 7 39 39 H 1.08996 * 109.80587 * 356.96180 * 10 9 7 40 40 H 1.09003 * 109.25267 * 182.34877 * 11 10 9 41 41 H 1.09003 * 109.22876 * 62.88857 * 11 10 9 42 42 H 1.09001 * 111.39361 * 163.93636 * 14 12 11 43 43 H 1.08998 * 110.71336 * 40.30406 * 14 12 11 44 44 H 1.09000 * 109.90253 * 217.28719 * 15 14 12 45 45 H 1.08999 * 109.90336 * 96.04871 * 15 14 12 46 46 H 0.96994 * 120.00062 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.22821 * 7.13346 * 27 9 7 48 48 H 1.09000 * 109.22768 * 247.72830 * 27 9 7 49 49 H 0.96706 * 113.99748 * 90.00341 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2064 0.0059 5 6 4.3409 2.5012 0.0118 6 6 4.2355 -0.0250 0.0010 7 6 5.7097 -0.0815 0.0021 8 8 6.3179 -0.1053 -1.0505 9 7 6.3823 -0.1068 1.1697 10 6 5.6731 -0.0797 2.4587 11 6 6.1797 1.1261 3.2494 12 6 7.6973 1.0483 3.4359 13 1 8.0024 0.2665 4.1314 14 6 8.1653 2.4602 3.8905 15 6 8.1536 3.2514 2.5636 16 7 8.2804 2.2696 1.4710 17 6 8.2807 2.5508 0.1307 18 1 8.3806 1.7514 -0.5886 19 6 8.1525 3.8631 -0.3032 20 7 8.0313 4.8373 0.5735 21 14 8.1536 4.2466 -2.1315 22 1 6.7619 4.2019 -2.6474 23 1 8.7204 5.6012 -2.3527 24 1 8.9795 3.2414 -2.8476 25 6 8.4065 0.9405 2.0731 26 1 9.4634 0.7413 2.2498 27 6 7.8484 -0.1636 1.2018 28 6 3.4757 -1.2042 0.0010 29 8 4.0991 -2.4065 0.0010 30 7 2.1546 -1.1489 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6411 2.1376 -0.0004 35 1 4.5273 2.8178 -1.0145 36 1 3.7618 3.2666 0.5285 37 1 5.2911 2.3559 0.5255 38 1 5.8785 -0.9960 3.0122 39 1 4.6008 0.0153 2.2884 40 1 5.6978 1.1431 4.2270 41 1 5.9302 2.0398 2.7098 42 1 9.1694 2.4292 4.3135 43 1 7.4605 2.8892 4.6028 44 1 8.9936 3.9456 2.5380 45 1 7.2151 3.7970 2.4651 46 1 7.9422 5.7543 0.2702 47 1 8.2343 -0.0513 0.1886 48 1 8.1616 -1.1286 1.6003 49 1 4.2800 -2.7556 0.8845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042175041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:44 Heat of formation + Delta-G solvation = -7.376875 kcal Electronic energy + Delta-G solvation = -33140.414788 eV Core-core repulsion = 29068.559601 eV Total energy + Delta-G solvation = -4071.855187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.99221 -39.62500 -37.94054 -37.36105 -35.00670 -34.07380 -32.86676 -31.83336 -31.19867 -29.50441 -28.45191 -27.99615 -27.37284 -24.70875 -24.18621 -23.03268 -22.60408 -21.52600 -20.05767 -19.90485 -18.45004 -18.40297 -17.35115 -16.92285 -16.57714 -15.92415 -15.46089 -14.96383 -14.66707 -14.47348 -14.23448 -14.05464 -13.97351 -13.61303 -13.14086 -13.06791 -12.96212 -12.89330 -12.79148 -12.46787 -12.37208 -12.01907 -11.95510 -11.80307 -11.66119 -11.50664 -11.43172 -11.25708 -10.95496 -10.83650 -10.72120 -10.14572 -10.00099 -9.88982 -9.79664 -9.66679 -9.53924 -9.42596 -9.22214 -8.73393 -8.56297 -8.18242 -6.80084 -5.67640 -2.99459 0.80640 1.13756 2.97473 3.23338 3.44162 3.46779 3.50033 3.55582 3.59363 4.43417 4.54574 4.61764 4.70701 4.99228 5.01475 5.06222 5.22154 5.27619 5.31227 5.38953 5.44402 5.45551 5.48984 5.64315 5.67278 5.69465 5.76033 5.79668 5.92501 5.94219 5.99005 6.01726 6.09406 6.22924 6.26095 6.30174 6.35787 6.39531 6.43056 6.58707 6.69576 6.72813 6.90507 7.04297 7.38612 7.58880 7.61347 7.78403 7.84012 7.88642 8.26447 8.59021 9.26554 9.86756 10.51245 11.44220 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011142 B = 0.005069 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.317651 B = 5522.330685 C = 6455.549142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.159 3.841 3 C -0.188 4.188 4 C 0.020 3.980 5 C -0.128 4.128 6 C -0.188 4.188 7 C 0.582 3.418 8 O -0.519 6.519 9 N -0.587 5.587 10 C 0.111 3.889 11 C -0.121 4.121 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.145 4.145 15 C 0.179 3.821 16 N -0.589 5.589 17 C -0.212 4.212 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.924 5.924 21 Si 0.899 3.101 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.153 3.847 26 H 0.029 0.971 27 C 0.114 3.886 28 C 0.344 3.656 29 O -0.473 6.473 30 N -0.510 5.510 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.045 0.955 46 H 0.249 0.751 47 H 0.096 0.904 48 H 0.057 0.943 49 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 -8.867 8.204 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.021 3.979 3 C -0.208 4.208 4 C 0.012 3.988 5 C -0.184 4.184 6 C -0.194 4.194 7 C 0.368 3.632 8 O -0.394 6.394 9 N -0.320 5.320 10 C -0.012 4.012 11 C -0.159 4.159 12 C -0.120 4.120 13 H 0.092 0.908 14 C -0.184 4.184 15 C 0.054 3.946 16 N -0.314 5.314 17 C -0.340 4.340 18 H 0.099 0.901 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.730 3.270 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.045 3.955 26 H 0.046 0.954 27 C -0.009 4.009 28 C 0.165 3.835 29 O -0.279 6.279 30 N -0.230 5.230 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.114 0.886 48 H 0.075 0.925 49 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.696 -9.425 6.858 16.512 hybrid contribution 0.521 1.015 -0.457 1.229 sum -11.174 -8.410 6.401 15.381 Atomic orbital electron populations 1.20755 0.88387 1.03693 1.03255 1.21085 0.96752 0.87125 0.92903 1.21813 0.93801 0.99479 1.05675 1.20508 0.93507 0.94827 0.89973 1.21041 1.01323 0.91822 1.04263 1.20907 0.95498 0.93888 1.09131 1.17563 0.85594 0.76220 0.83830 1.90805 1.68763 1.48950 1.30911 1.47759 1.07073 1.72383 1.04793 1.21616 0.96144 0.98843 0.84589 1.21819 0.95789 0.99077 0.99232 1.22272 0.94735 0.97586 0.97406 0.90756 1.23083 0.99663 0.95914 0.99692 1.21213 1.00735 0.90173 0.82440 1.44299 1.85726 0.99323 1.02062 1.19032 1.41915 0.92346 0.80743 0.90135 1.24635 1.02619 0.95680 0.97030 1.69952 1.57216 0.98916 1.31124 0.86289 0.77838 0.77142 0.85684 1.21739 1.21955 1.20663 1.20736 0.96125 0.87809 0.90851 0.95401 1.21442 0.78576 0.97400 1.03466 1.18941 0.86361 0.84291 0.93936 1.84770 1.76798 1.32827 1.33514 1.66972 1.09087 1.30405 1.16560 0.90114 0.90358 0.90349 0.83984 0.89772 0.90777 0.88173 0.91724 0.91163 0.92064 0.89944 0.92647 0.92369 0.94150 0.93681 0.94047 0.88577 0.92526 0.74417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.16 36.01 0.37 -0.51 16 2 C 0.16 1.99 6.78 -82.53 -0.56 1.43 16 3 C -0.19 -2.40 9.41 -39.50 -0.37 -2.77 16 4 C 0.02 0.31 5.88 -103.93 -0.61 -0.30 16 5 C -0.13 -2.23 9.69 36.00 0.35 -1.88 16 6 C -0.19 -3.19 3.68 -104.69 -0.39 -3.57 16 7 C 0.58 11.30 5.32 -12.47 -0.07 11.23 16 8 O -0.52 -12.42 16.56 5.28 0.09 -12.34 16 9 N -0.59 -9.92 2.97 -175.30 -0.52 -10.44 16 10 C 0.11 1.48 6.35 -3.77 -0.02 1.45 16 11 C -0.12 -1.74 5.04 -26.76 -0.13 -1.87 16 12 C -0.10 -1.54 3.62 -88.69 -0.32 -1.86 16 13 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.15 -2.46 6.35 -24.59 -0.16 -2.61 16 15 C 0.18 4.00 4.59 -2.74 -0.01 3.99 16 16 N -0.59 -13.66 3.17 -164.40 -0.52 -14.18 16 17 C -0.21 -5.63 9.70 -15.06 -0.15 -5.78 16 18 H 0.08 2.25 6.53 -52.49 -0.34 1.91 16 19 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -25.97 10.38 55.49 0.58 -25.40 16 21 Si 0.90 22.79 29.55 -169.99 -5.02 17.77 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 25 C 0.15 2.87 3.00 -68.28 -0.20 2.67 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 C 0.11 2.04 5.67 -4.76 -0.03 2.01 16 28 C 0.34 5.40 7.77 -16.62 -0.13 5.27 16 29 O -0.47 -6.80 13.01 -17.98 -0.23 -7.04 16 30 N -0.51 -7.51 10.28 -9.21 -0.09 -7.61 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.10 2.09 6.80 -51.93 -0.35 1.73 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.47 6.40 -51.93 -0.33 1.14 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.89 7.98 -51.93 -0.41 0.48 16 44 H 0.04 1.03 7.57 -51.93 -0.39 0.64 16 45 H 0.05 1.12 7.00 -51.93 -0.36 0.75 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.10 2.05 5.57 -51.93 -0.29 1.76 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.40 3.63 9.06 45.56 0.41 4.05 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -33.41 384.82 -9.07 -42.48 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.61 Total: 4.27 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -2.53 Total: 6.69 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.56 Total: -57.63 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.15 Total: -19.37 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.41 -9.07 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042175041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.107 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds