Wall clock time and date at job start Wed Apr 1 2020 03:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.40545 * 2 1 4 4 C 1.38346 * 119.45414 * 179.72110 * 3 2 1 5 5 C 1.50698 * 120.82637 * 180.25361 * 4 3 2 6 6 C 1.39987 * 118.34631 * 0.49457 * 4 3 2 7 7 C 1.47527 * 120.59204 * 179.78319 * 6 4 3 8 8 O 1.21595 * 119.99997 * 269.71987 * 7 6 4 9 9 N 1.34776 * 120.00514 * 89.72173 * 7 6 4 10 10 C 1.47150 * 121.20140 * 0.02562 * 9 7 6 11 11 C 1.52837 * 107.93978 * 237.33542 * 10 9 7 12 12 C 1.53097 * 110.57240 * 302.62636 * 11 10 9 13 13 H 1.08993 * 113.05884 * 289.01274 * 12 11 10 14 14 C 1.55542 * 106.72053 * 164.99383 * 12 11 10 15 15 C 1.54501 * 102.21180 * 282.27361 * 14 12 11 16 16 N 1.47436 * 107.14625 * 336.67130 * 15 14 12 17 17 C 1.36942 * 126.05726 * 178.39238 * 16 15 14 18 18 H 1.07998 * 119.99799 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99987 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00345 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47072 * 89.99988 * 21 19 17 23 23 H 1.48493 * 109.47148 * 210.00422 * 21 19 17 24 24 H 1.48505 * 109.47200 * 330.00363 * 21 19 17 25 25 C 1.46460 * 107.88277 * 358.37447 * 16 15 14 26 26 H 1.08995 * 108.42016 * 270.76364 * 25 16 15 27 27 C 1.46756 * 121.21823 * 179.97438 * 9 7 6 28 28 C 1.40277 * 118.80701 * 359.50786 * 6 4 3 29 29 O 1.35430 * 119.79681 * 180.22817 * 28 6 4 30 30 N 1.31881 * 119.40656 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47491 * 270.02239 * 1 2 3 32 32 H 1.09004 * 109.46998 * 30.02349 * 1 2 3 33 33 H 1.08997 * 109.47132 * 150.02099 * 1 2 3 34 34 H 1.08001 * 120.27637 * 359.97438 * 3 2 1 35 35 H 1.09007 * 109.47169 * 270.25084 * 5 4 3 36 36 H 1.09004 * 109.47049 * 30.24100 * 5 4 3 37 37 H 1.08997 * 109.47605 * 150.24611 * 5 4 3 38 38 H 1.09001 * 109.78899 * 117.71851 * 10 9 7 39 39 H 1.08996 * 109.80587 * 356.96180 * 10 9 7 40 40 H 1.09003 * 109.25267 * 182.34877 * 11 10 9 41 41 H 1.09003 * 109.22876 * 62.88857 * 11 10 9 42 42 H 1.09001 * 111.39361 * 163.93636 * 14 12 11 43 43 H 1.08998 * 110.71336 * 40.30406 * 14 12 11 44 44 H 1.09000 * 109.90253 * 217.28719 * 15 14 12 45 45 H 1.08999 * 109.90336 * 96.04871 * 15 14 12 46 46 H 0.96994 * 120.00062 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.22821 * 7.13346 * 27 9 7 48 48 H 1.09000 * 109.22768 * 247.72830 * 27 9 7 49 49 H 0.96706 * 113.99748 * 90.00341 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2064 0.0059 5 6 4.3409 2.5012 0.0118 6 6 4.2355 -0.0250 0.0010 7 6 5.7097 -0.0815 0.0021 8 8 6.3179 -0.1053 -1.0505 9 7 6.3823 -0.1068 1.1697 10 6 5.6731 -0.0797 2.4587 11 6 6.1797 1.1261 3.2494 12 6 7.6973 1.0483 3.4359 13 1 8.0024 0.2665 4.1314 14 6 8.1653 2.4602 3.8905 15 6 8.1536 3.2514 2.5636 16 7 8.2804 2.2696 1.4710 17 6 8.2807 2.5508 0.1307 18 1 8.3806 1.7514 -0.5886 19 6 8.1525 3.8631 -0.3032 20 7 8.0313 4.8373 0.5735 21 14 8.1536 4.2466 -2.1315 22 1 6.7619 4.2019 -2.6474 23 1 8.7204 5.6012 -2.3527 24 1 8.9795 3.2414 -2.8476 25 6 8.4065 0.9405 2.0731 26 1 9.4634 0.7413 2.2498 27 6 7.8484 -0.1636 1.2018 28 6 3.4757 -1.2042 0.0010 29 8 4.0991 -2.4065 0.0010 30 7 2.1546 -1.1489 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6411 2.1376 -0.0004 35 1 4.5273 2.8178 -1.0145 36 1 3.7618 3.2666 0.5285 37 1 5.2911 2.3559 0.5255 38 1 5.8785 -0.9960 3.0122 39 1 4.6008 0.0153 2.2884 40 1 5.6978 1.1431 4.2270 41 1 5.9302 2.0398 2.7098 42 1 9.1694 2.4292 4.3135 43 1 7.4605 2.8892 4.6028 44 1 8.9936 3.9456 2.5380 45 1 7.2151 3.7970 2.4651 46 1 7.9422 5.7543 0.2702 47 1 8.2343 -0.0513 0.1886 48 1 8.1616 -1.1286 1.6003 49 1 4.2800 -2.7556 0.8845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042175041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:43 Heat of formation + Delta-G solvation = -32.909272 kcal Electronic energy + Delta-G solvation = -33141.521955 eV Core-core repulsion = 29068.559601 eV Total energy + Delta-G solvation = -4072.962355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.20612 -40.96530 -39.44474 -38.45254 -36.55624 -35.27840 -34.63934 -32.93488 -32.71673 -30.96290 -30.08099 -29.28395 -28.44195 -26.48513 -25.65579 -24.22156 -23.92864 -22.70870 -21.70244 -21.28661 -19.84460 -19.54561 -18.60589 -18.47318 -18.06467 -17.33683 -16.83339 -16.59124 -16.14560 -15.80242 -15.73903 -15.45980 -15.13131 -14.98457 -14.46817 -14.40499 -14.26299 -14.09352 -13.98346 -13.95125 -13.67627 -13.26628 -13.21214 -13.11958 -13.03374 -12.94703 -12.78913 -12.67125 -12.61306 -12.57240 -12.32824 -12.06834 -11.65403 -11.43723 -11.32533 -11.20720 -11.08175 -10.66532 -10.60342 -10.47460 -9.82590 -9.56602 -8.77060 -7.81563 -5.09994 -0.28756 -0.00612 1.33227 1.35729 1.44367 1.53602 2.01026 2.36250 2.47302 2.50085 3.31980 3.37315 3.50209 3.53527 3.65024 3.85996 3.90495 3.98388 4.11273 4.18393 4.25324 4.27636 4.45820 4.48037 4.51535 4.53036 4.55921 4.59960 4.67131 4.75916 4.84041 4.84240 4.88334 4.97107 5.00500 5.01704 5.12309 5.15587 5.18708 5.24516 5.32728 5.50868 5.56818 5.64070 5.68461 5.76525 5.86202 6.25928 6.41192 6.48581 6.77104 7.16387 7.19222 7.86057 8.48968 9.28580 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011142 B = 0.005069 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.317651 B = 5522.330685 C = 6455.549142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.165 3.835 3 C -0.177 4.177 4 C 0.006 3.994 5 C -0.116 4.116 6 C -0.209 4.209 7 C 0.579 3.421 8 O -0.584 6.584 9 N -0.582 5.582 10 C 0.110 3.890 11 C -0.117 4.117 12 C -0.082 4.082 13 H 0.122 0.878 14 C -0.131 4.131 15 C 0.187 3.813 16 N -0.603 5.603 17 C -0.196 4.196 18 H 0.059 0.941 19 C -0.048 4.048 20 N -0.941 5.941 21 Si 0.936 3.064 22 H -0.294 1.294 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.142 3.858 26 H 0.029 0.971 27 C 0.117 3.883 28 C 0.346 3.654 29 O -0.485 6.485 30 N -0.519 5.519 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.067 0.933 43 H 0.081 0.919 44 H -0.003 1.003 45 H 0.013 0.987 46 H 0.242 0.758 47 H 0.050 0.950 48 H 0.098 0.902 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 -10.832 11.185 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.027 3.973 3 C -0.196 4.196 4 C -0.002 4.002 5 C -0.172 4.172 6 C -0.216 4.216 7 C 0.366 3.634 8 O -0.464 6.464 9 N -0.313 5.313 10 C -0.011 4.011 11 C -0.155 4.155 12 C -0.102 4.102 13 H 0.140 0.860 14 C -0.169 4.169 15 C 0.062 3.938 16 N -0.328 5.328 17 C -0.326 4.326 18 H 0.077 0.923 19 C -0.241 4.241 20 N -0.592 5.592 21 Si 0.768 3.232 22 H -0.222 1.222 23 H -0.216 1.216 24 H -0.214 1.214 25 C 0.035 3.965 26 H 0.047 0.953 27 C -0.007 4.007 28 C 0.167 3.833 29 O -0.295 6.295 30 N -0.240 5.240 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.193 0.807 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.015 0.985 45 H 0.031 0.969 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.116 0.884 49 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -14.401 -11.428 9.913 20.887 hybrid contribution 1.337 1.554 -1.362 2.462 sum -13.063 -9.874 8.551 18.474 Atomic orbital electron populations 1.20918 0.84947 1.04923 1.05032 1.21842 0.98766 0.86249 0.90410 1.22115 0.92281 1.01224 1.04028 1.20429 0.94841 0.93375 0.91555 1.20808 1.00264 0.93902 1.02247 1.20774 0.93949 0.95107 1.11756 1.18022 0.86745 0.75076 0.83539 1.90758 1.70286 1.52115 1.33221 1.47875 1.06792 1.70854 1.05784 1.21922 0.96222 1.00317 0.82681 1.21787 0.95370 0.97597 1.00788 1.22311 0.94892 0.97675 0.95281 0.86035 1.22953 1.01287 0.96051 0.96585 1.20969 0.97182 0.90223 0.85378 1.44437 1.85217 1.01932 1.01186 1.18934 1.39685 0.91497 0.82483 0.92283 1.25035 1.04080 0.95993 0.99019 1.70097 1.58971 0.98551 1.31558 0.85701 0.77300 0.76713 0.83508 1.22188 1.21553 1.21396 1.21036 0.96822 0.85710 0.92928 0.95336 1.21350 0.79390 0.98997 1.00952 1.18933 0.86698 0.84069 0.93638 1.84717 1.76860 1.32343 1.35561 1.67138 1.08327 1.31431 1.17056 0.87823 0.88000 0.90282 0.80741 0.92538 0.88431 0.92093 0.87346 0.90449 0.88094 0.94141 0.91431 0.89997 0.98478 0.96917 0.94796 0.93138 0.88427 0.71955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.16 71.24 0.72 -0.53 16 2 C 0.16 3.61 6.78 42.58 0.29 3.90 16 3 C -0.18 -4.09 9.41 22.32 0.21 -3.88 16 4 C 0.01 0.18 5.88 -19.41 -0.11 0.07 16 5 C -0.12 -4.22 9.69 71.24 0.69 -3.53 16 6 C -0.21 -7.12 3.68 -19.91 -0.07 -7.19 16 7 C 0.58 23.23 5.32 86.69 0.46 23.69 16 8 O -0.58 -29.91 16.56 -4.01 -0.07 -29.98 16 9 N -0.58 -19.46 2.97 -826.79 -2.45 -21.91 16 10 C 0.11 2.58 6.35 86.20 0.55 3.13 16 11 C -0.12 -2.99 5.04 30.57 0.15 -2.84 16 12 C -0.08 -2.23 3.62 -9.55 -0.03 -2.26 16 13 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.13 -4.13 6.35 31.98 0.20 -3.92 16 15 C 0.19 8.63 4.59 86.71 0.40 9.03 16 16 N -0.60 -29.06 3.17 -674.03 -2.13 -31.20 16 17 C -0.20 -11.07 9.70 84.03 0.81 -10.26 16 18 H 0.06 3.57 6.53 -2.91 -0.02 3.55 16 19 C -0.05 -2.79 5.49 84.86 0.47 -2.33 16 20 N -0.94 -55.93 10.38 21.65 0.22 -55.71 16 21 Si 0.94 49.40 29.55 68.60 2.03 51.43 16 22 H -0.29 -15.54 7.11 99.48 0.71 -14.84 16 23 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 24 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 25 C 0.14 5.23 3.00 44.79 0.13 5.37 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 C 0.12 4.14 5.67 85.78 0.49 4.63 16 28 C 0.35 10.44 7.77 85.13 0.66 11.10 16 29 O -0.48 -13.39 13.01 -87.26 -1.14 -14.53 16 30 N -0.52 -14.07 10.28 -296.07 -3.04 -17.12 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.84 8.07 -2.38 -0.02 0.82 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.10 2.93 8.10 -2.39 -0.02 2.91 16 37 H 0.06 2.71 6.80 -2.39 -0.02 2.69 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.76 6.34 -2.39 -0.02 1.74 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.41 6.40 -2.39 -0.02 1.39 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 2.24 7.98 -2.39 -0.02 2.22 16 44 H 0.00 -0.17 7.57 -2.39 -0.02 -0.18 16 45 H 0.01 0.66 7.00 -2.39 -0.02 0.64 16 46 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.05 2.28 5.57 -2.39 -0.01 2.27 16 48 H 0.10 2.66 8.14 -2.39 -0.02 2.65 16 49 H 0.42 6.77 9.06 -74.05 -0.67 6.10 16 Total: -1.00 -82.20 384.82 -0.25 -82.45 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.31 Total: 12.39 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 6.02 Total: 24.16 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -7.40 Total: -125.93 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.20 Total: -44.51 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Total: -82.20 -0.25 -82.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042175041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.544 kcal (2) G-P(sol) polarization free energy of solvation -82.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds