Wall clock time and date at job start Wed Apr 1 2020 03:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38354 * 119.40940 * 2 1 4 4 C 1.38333 * 119.45810 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.82598 * 179.97438 * 4 3 2 6 6 C 1.39991 * 118.35115 * 359.97438 * 4 3 2 7 7 C 1.47521 * 120.59639 * 179.97438 * 6 4 3 8 8 O 1.21593 * 119.99875 * 89.99961 * 7 6 4 9 9 N 1.34773 * 120.00175 * 270.27132 * 7 6 4 10 10 C 1.46599 * 119.75295 * 359.73046 * 9 7 6 11 11 C 1.53883 * 110.70908 * 132.24927 * 10 9 7 12 12 C 1.51982 * 107.29321 * 51.81444 * 11 10 9 13 13 H 1.09001 * 111.01337 * 56.51979 * 12 11 10 14 14 C 1.53701 * 115.00688 * 184.55234 * 12 11 10 15 15 C 1.55303 * 101.81096 * 153.46905 * 14 12 11 16 16 N 1.48161 * 107.04257 * 337.55309 * 15 14 12 17 17 C 1.36932 * 126.39394 * 175.03194 * 16 15 14 18 18 H 1.08007 * 119.99381 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00290 * 359.96094 * 17 16 15 20 20 N 1.31614 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99726 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47634 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47091 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.47080 * 240.00057 * 21 19 17 25 25 C 1.45511 * 107.20372 * 355.00083 * 16 15 14 26 26 H 1.08997 * 109.56251 * 273.37213 * 25 16 15 27 27 C 1.47800 * 119.75600 * 179.45142 * 9 7 6 28 28 C 1.40274 * 118.80374 * 0.25207 * 6 4 3 29 29 O 1.35425 * 119.79946 * 179.73049 * 28 6 4 30 30 N 1.31878 * 119.40507 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47069 * 90.00365 * 1 2 3 32 32 H 1.08996 * 109.47121 * 210.00546 * 1 2 3 33 33 H 1.09004 * 109.47120 * 330.00332 * 1 2 3 34 34 H 1.08001 * 120.27134 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47354 * 270.02742 * 5 4 3 36 36 H 1.09008 * 109.46938 * 30.02219 * 5 4 3 37 37 H 1.08997 * 109.47549 * 150.02184 * 5 4 3 38 38 H 1.09001 * 109.22984 * 252.56369 * 10 9 7 39 39 H 1.09001 * 109.22956 * 11.97196 * 10 9 7 40 40 H 1.09003 * 109.89458 * 171.25699 * 11 10 9 41 41 H 1.09003 * 109.89724 * 292.29305 * 11 10 9 42 42 H 1.08999 * 110.96353 * 271.59810 * 14 12 11 43 43 H 1.09000 * 110.95667 * 35.33774 * 14 12 11 44 44 H 1.09001 * 109.91632 * 218.21192 * 15 14 12 45 45 H 1.08992 * 110.08833 * 96.99742 * 15 14 12 46 46 H 0.96998 * 120.00028 * 179.97438 * 20 19 17 47 47 H 1.08996 * 110.05922 * 350.48189 * 27 9 7 48 48 H 1.09001 * 110.05872 * 112.03963 * 27 9 7 49 49 H 0.96692 * 114.00804 * 89.99824 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.3409 2.5012 -0.0011 6 6 4.2356 -0.0250 -0.0005 7 6 5.7097 -0.0816 -0.0016 8 8 6.3180 -0.1044 1.0509 9 7 6.3824 -0.1024 -1.1693 10 6 5.6435 -0.0746 -2.4352 11 6 6.2410 0.9729 -3.3911 12 6 7.7338 0.7025 -3.4816 13 1 7.9269 -0.3201 -3.8058 14 6 8.5295 1.7217 -4.3126 15 6 9.9414 1.6196 -3.6738 16 7 9.7616 1.0754 -2.3075 17 6 10.7570 0.7364 -1.4304 18 1 10.5072 0.3470 -0.4545 19 6 12.0870 0.8930 -1.7957 20 7 12.3913 1.3668 -2.9853 21 14 13.4448 0.4312 -0.5988 22 1 12.8433 -0.0740 0.6614 23 1 14.2955 -0.6273 -1.1997 24 1 14.2752 1.6273 -0.3068 25 6 8.3296 0.9691 -2.0716 26 1 7.9514 1.9172 -1.6893 27 6 7.8597 -0.1468 -1.1641 28 6 3.4758 -1.2041 -0.0054 29 8 4.0991 -2.4064 -0.0110 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6412 2.1375 -0.0004 35 1 4.5260 2.8134 -1.0290 36 1 3.7625 3.2688 0.5131 37 1 5.2918 2.3581 0.5120 38 1 5.6951 -1.0580 -2.9026 39 1 4.6010 0.1744 -2.2370 40 1 5.7864 0.8772 -4.3772 41 1 6.0676 1.9749 -2.9987 42 1 8.5552 1.4330 -5.3633 43 1 8.1200 2.7250 -4.1952 44 1 10.3982 2.6080 -3.6226 45 1 10.5702 0.9500 -4.2604 46 1 13.3207 1.4766 -3.2404 47 1 8.2349 0.0119 -0.1531 48 1 8.2062 -1.1069 -1.5465 49 1 4.2806 -2.7596 0.8707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042175042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:48 Heat of formation + Delta-G solvation = -9.201495 kcal Electronic energy + Delta-G solvation = -31703.394321 eV Core-core repulsion = 27631.460013 eV Total energy + Delta-G solvation = -4071.934308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.27436 -39.77231 -38.15916 -37.55194 -35.39284 -34.42626 -32.90972 -32.07154 -31.28187 -29.83559 -28.64048 -28.18445 -27.70519 -24.74841 -24.21124 -23.16475 -22.25872 -21.77596 -20.23589 -19.90058 -19.18047 -18.64313 -17.54036 -17.31653 -16.52268 -16.13280 -15.73342 -14.92573 -14.80220 -14.64904 -14.49898 -14.32254 -14.01452 -13.73271 -13.59941 -13.29635 -13.26002 -13.12306 -12.98383 -12.70329 -12.60997 -12.27194 -12.21859 -12.11428 -11.90488 -11.85475 -11.53125 -11.33009 -10.95876 -10.81598 -10.77159 -10.26383 -10.12772 -9.97455 -9.91837 -9.77393 -9.67256 -9.53099 -9.47581 -9.00785 -8.63903 -8.46157 -6.86636 -5.72652 -3.06459 0.53339 0.82985 2.57688 2.99874 3.08413 3.40943 3.46494 3.47831 3.49948 4.15400 4.25181 4.41086 4.50382 4.70727 4.88306 4.90398 4.96062 5.01962 5.10772 5.12381 5.21782 5.30972 5.34072 5.38119 5.50713 5.54153 5.63008 5.64931 5.66811 5.75459 5.79574 5.87366 5.93046 6.00757 6.05582 6.11535 6.15115 6.18607 6.35748 6.46123 6.54485 6.68039 6.73249 7.03000 7.20503 7.47998 7.54480 7.59719 7.60750 7.80988 8.18943 8.23166 9.18344 9.81229 10.47614 11.39709 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003052 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.096324 B = 9173.488992 C = 9797.817628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.163 3.837 3 C -0.186 4.186 4 C 0.011 3.989 5 C -0.126 4.126 6 C -0.191 4.191 7 C 0.572 3.428 8 O -0.535 6.535 9 N -0.590 5.590 10 C 0.112 3.888 11 C -0.118 4.118 12 C -0.112 4.112 13 H 0.078 0.922 14 C -0.137 4.137 15 C 0.177 3.823 16 N -0.591 5.591 17 C -0.228 4.228 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.157 3.843 26 H 0.023 0.977 27 C 0.116 3.884 28 C 0.352 3.648 29 O -0.475 6.475 30 N -0.506 5.506 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.056 0.944 46 H 0.252 0.748 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.969 0.163 1.481 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.206 4.206 4 C 0.003 3.997 5 C -0.183 4.183 6 C -0.198 4.198 7 C 0.357 3.643 8 O -0.412 6.412 9 N -0.322 5.322 10 C -0.011 4.011 11 C -0.157 4.157 12 C -0.132 4.132 13 H 0.096 0.904 14 C -0.175 4.175 15 C 0.053 3.947 16 N -0.316 5.316 17 C -0.356 4.356 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.048 3.952 26 H 0.040 0.960 27 C -0.006 4.006 28 C 0.172 3.828 29 O -0.283 6.283 30 N -0.226 5.226 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -23.782 -0.613 1.450 23.834 hybrid contribution 1.305 0.320 0.951 1.646 sum -22.477 -0.293 2.400 22.607 Atomic orbital electron populations 1.20785 0.88187 1.03816 1.03504 1.21152 0.96929 0.87077 0.92292 1.21775 0.93580 0.99609 1.05627 1.20292 0.93628 0.94277 0.91545 1.20970 1.00616 0.92913 1.03779 1.20923 0.95289 0.94100 1.09464 1.17818 0.85864 0.76486 0.84123 1.90821 1.69076 1.50403 1.30930 1.48199 1.07615 1.71186 1.05188 1.21679 0.94982 0.99969 0.84486 1.21810 0.96589 0.98648 0.98642 1.22267 0.92701 0.99973 0.98268 0.90366 1.22711 0.98797 0.97575 0.98414 1.21551 0.90194 0.98460 0.84516 1.44178 0.98420 1.75063 1.13976 1.19090 0.85026 1.36315 0.95147 0.90213 1.24780 0.97096 1.01315 0.97055 1.69949 1.16929 1.50937 1.19048 0.86075 0.82152 0.77660 0.80128 1.20355 1.21755 1.21759 1.20873 0.86948 0.94907 0.92450 0.95988 1.21706 0.75927 1.00177 1.02823 1.18990 0.86291 0.84486 0.93015 1.84690 1.76658 1.32562 1.34359 1.67043 1.09106 1.30428 1.16066 0.89918 0.90184 0.90253 0.83822 0.89559 0.90134 0.90225 0.91439 0.91026 0.90811 0.91489 0.92200 0.92552 0.94437 0.92545 0.93800 0.88879 0.90916 0.73460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 2 C 0.16 1.57 6.78 -82.53 -0.56 1.01 16 3 C -0.19 -1.64 9.41 -39.50 -0.37 -2.01 16 4 C 0.01 0.12 5.67 -103.93 -0.59 -0.47 16 5 C -0.13 -1.26 9.69 36.01 0.35 -0.91 16 6 C -0.19 -2.58 3.65 -104.69 -0.38 -2.97 16 7 C 0.57 9.38 5.28 -12.48 -0.07 9.31 16 8 O -0.53 -10.63 16.48 5.28 0.09 -10.55 16 9 N -0.59 -9.45 3.02 -174.24 -0.53 -9.98 16 10 C 0.11 1.48 6.24 -3.53 -0.02 1.46 16 11 C -0.12 -1.54 5.72 -26.79 -0.15 -1.69 16 12 C -0.11 -1.89 2.62 -89.51 -0.23 -2.12 16 13 H 0.08 1.37 8.13 -51.93 -0.42 0.95 16 14 C -0.14 -2.44 6.54 -25.15 -0.16 -2.61 16 15 C 0.18 4.19 5.46 -1.91 -0.01 4.18 16 16 N -0.59 -14.75 3.35 -163.16 -0.55 -15.29 16 17 C -0.23 -6.27 9.88 -15.06 -0.15 -6.42 16 18 H 0.08 2.16 7.41 -52.48 -0.39 1.77 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -26.85 10.43 55.49 0.58 -26.28 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 C 0.16 3.19 2.74 -68.05 -0.19 3.00 16 26 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 27 C 0.12 2.21 5.65 -4.18 -0.02 2.19 16 28 C 0.35 4.64 7.77 -16.61 -0.13 4.51 16 29 O -0.47 -6.03 13.01 -17.97 -0.23 -6.26 16 30 N -0.51 -6.22 10.28 -9.21 -0.09 -6.31 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.60 8.10 -51.92 -0.42 0.18 16 37 H 0.08 1.01 7.19 -51.93 -0.37 0.64 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.86 6.06 -51.93 -0.31 0.55 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 44 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 45 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.09 1.99 6.75 -51.93 -0.35 1.64 16 48 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.41 3.57 9.06 45.56 0.41 3.99 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -33.96 389.33 -9.13 -43.10 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.82 Total: 2.51 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.42 Total: 5.92 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.59 Total: -57.86 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.15 Total: -16.81 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.96 -9.13 -43.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042175042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.896 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds