Wall clock time and date at job start Wed Apr 1 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38354 * 119.40940 * 2 1 4 4 C 1.38333 * 119.45810 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.82598 * 179.97438 * 4 3 2 6 6 C 1.39991 * 118.35115 * 359.97438 * 4 3 2 7 7 C 1.47521 * 120.59639 * 179.97438 * 6 4 3 8 8 O 1.21593 * 119.99875 * 89.99961 * 7 6 4 9 9 N 1.34773 * 120.00175 * 270.27132 * 7 6 4 10 10 C 1.46599 * 119.75295 * 359.73046 * 9 7 6 11 11 C 1.53883 * 110.70908 * 132.24927 * 10 9 7 12 12 C 1.51982 * 107.29321 * 51.81444 * 11 10 9 13 13 H 1.09001 * 111.01337 * 56.51979 * 12 11 10 14 14 C 1.53701 * 115.00688 * 184.55234 * 12 11 10 15 15 C 1.55303 * 101.81096 * 153.46905 * 14 12 11 16 16 N 1.48161 * 107.04257 * 337.55309 * 15 14 12 17 17 C 1.36932 * 126.39394 * 175.03194 * 16 15 14 18 18 H 1.08007 * 119.99381 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00290 * 359.96094 * 17 16 15 20 20 N 1.31614 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99726 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47634 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47091 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.47080 * 240.00057 * 21 19 17 25 25 C 1.45511 * 107.20372 * 355.00083 * 16 15 14 26 26 H 1.08997 * 109.56251 * 273.37213 * 25 16 15 27 27 C 1.47800 * 119.75600 * 179.45142 * 9 7 6 28 28 C 1.40274 * 118.80374 * 0.25207 * 6 4 3 29 29 O 1.35425 * 119.79946 * 179.73049 * 28 6 4 30 30 N 1.31878 * 119.40507 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47069 * 90.00365 * 1 2 3 32 32 H 1.08996 * 109.47121 * 210.00546 * 1 2 3 33 33 H 1.09004 * 109.47120 * 330.00332 * 1 2 3 34 34 H 1.08001 * 120.27134 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47354 * 270.02742 * 5 4 3 36 36 H 1.09008 * 109.46938 * 30.02219 * 5 4 3 37 37 H 1.08997 * 109.47549 * 150.02184 * 5 4 3 38 38 H 1.09001 * 109.22984 * 252.56369 * 10 9 7 39 39 H 1.09001 * 109.22956 * 11.97196 * 10 9 7 40 40 H 1.09003 * 109.89458 * 171.25699 * 11 10 9 41 41 H 1.09003 * 109.89724 * 292.29305 * 11 10 9 42 42 H 1.08999 * 110.96353 * 271.59810 * 14 12 11 43 43 H 1.09000 * 110.95667 * 35.33774 * 14 12 11 44 44 H 1.09001 * 109.91632 * 218.21192 * 15 14 12 45 45 H 1.08992 * 110.08833 * 96.99742 * 15 14 12 46 46 H 0.96998 * 120.00028 * 179.97438 * 20 19 17 47 47 H 1.08996 * 110.05922 * 350.48189 * 27 9 7 48 48 H 1.09001 * 110.05872 * 112.03963 * 27 9 7 49 49 H 0.96692 * 114.00804 * 89.99824 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.3409 2.5012 -0.0011 6 6 4.2356 -0.0250 -0.0005 7 6 5.7097 -0.0816 -0.0016 8 8 6.3180 -0.1044 1.0509 9 7 6.3824 -0.1024 -1.1693 10 6 5.6435 -0.0746 -2.4352 11 6 6.2410 0.9729 -3.3911 12 6 7.7338 0.7025 -3.4816 13 1 7.9269 -0.3201 -3.8058 14 6 8.5295 1.7217 -4.3126 15 6 9.9414 1.6196 -3.6738 16 7 9.7616 1.0754 -2.3075 17 6 10.7570 0.7364 -1.4304 18 1 10.5072 0.3470 -0.4545 19 6 12.0870 0.8930 -1.7957 20 7 12.3913 1.3668 -2.9853 21 14 13.4448 0.4312 -0.5988 22 1 12.8433 -0.0740 0.6614 23 1 14.2955 -0.6273 -1.1997 24 1 14.2752 1.6273 -0.3068 25 6 8.3296 0.9691 -2.0716 26 1 7.9514 1.9172 -1.6893 27 6 7.8597 -0.1468 -1.1641 28 6 3.4758 -1.2041 -0.0054 29 8 4.0991 -2.4064 -0.0110 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6412 2.1375 -0.0004 35 1 4.5260 2.8134 -1.0290 36 1 3.7625 3.2688 0.5131 37 1 5.2918 2.3581 0.5120 38 1 5.6951 -1.0580 -2.9026 39 1 4.6010 0.1744 -2.2370 40 1 5.7864 0.8772 -4.3772 41 1 6.0676 1.9749 -2.9987 42 1 8.5552 1.4330 -5.3633 43 1 8.1200 2.7250 -4.1952 44 1 10.3982 2.6080 -3.6226 45 1 10.5702 0.9500 -4.2604 46 1 13.3207 1.4766 -3.2404 47 1 8.2349 0.0119 -0.1531 48 1 8.2062 -1.1069 -1.5465 49 1 4.2806 -2.7596 0.8707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042175042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:47 Heat of formation + Delta-G solvation = -34.646717 kcal Electronic energy + Delta-G solvation = -31704.497709 eV Core-core repulsion = 27631.460013 eV Total energy + Delta-G solvation = -4073.037696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.28108 -41.02425 -39.59772 -38.43801 -36.92195 -35.29435 -34.67282 -32.98748 -32.80574 -31.21969 -30.26435 -29.22852 -28.42541 -26.57331 -25.59503 -24.19370 -23.61717 -22.65579 -21.83205 -21.41990 -20.46898 -19.52514 -18.88611 -18.28922 -18.27089 -17.38483 -16.87178 -16.63174 -16.18454 -15.81510 -15.75419 -15.53500 -15.32180 -14.91144 -14.77208 -14.48546 -14.23366 -14.13285 -13.94946 -13.91736 -13.83141 -13.58142 -13.23507 -13.16450 -13.09133 -12.95886 -12.84385 -12.78969 -12.62885 -12.56041 -12.17075 -12.00488 -11.80312 -11.56994 -11.44929 -11.36383 -11.07237 -10.75101 -10.62319 -10.47414 -9.84415 -9.81634 -8.92590 -7.88300 -5.23035 -0.30628 0.02089 1.32448 1.42393 1.42725 1.53345 1.76907 2.27164 2.47182 2.62906 3.19986 3.29988 3.45020 3.53007 3.54948 3.73213 3.87619 3.92189 3.99439 4.16178 4.21309 4.23440 4.25123 4.31342 4.45648 4.51586 4.55575 4.59701 4.62856 4.65687 4.77033 4.84525 4.85371 4.86377 4.96747 5.02105 5.06180 5.12143 5.12687 5.18452 5.20840 5.32244 5.45911 5.52204 5.55461 5.65811 5.77513 6.17459 6.22647 6.38695 6.79328 6.91858 7.06597 7.74481 8.41145 9.22745 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003052 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.096324 B = 9173.488992 C = 9797.817628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.162 3.838 3 C -0.170 4.170 4 C 0.007 3.993 5 C -0.124 4.124 6 C -0.212 4.212 7 C 0.574 3.426 8 O -0.582 6.582 9 N -0.588 5.588 10 C 0.111 3.889 11 C -0.106 4.106 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.119 4.119 15 C 0.180 3.820 16 N -0.612 5.612 17 C -0.236 4.236 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.151 3.849 26 H 0.014 0.986 27 C 0.129 3.871 28 C 0.342 3.658 29 O -0.491 6.491 30 N -0.525 5.525 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.186 0.814 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.002 0.998 45 H 0.022 0.978 46 H 0.247 0.753 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.065 1.095 0.657 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 C -0.190 4.190 4 C -0.001 4.001 5 C -0.180 4.180 6 C -0.219 4.219 7 C 0.362 3.638 8 O -0.462 6.462 9 N -0.319 5.319 10 C -0.011 4.011 11 C -0.144 4.144 12 C -0.116 4.116 13 H 0.091 0.909 14 C -0.157 4.157 15 C 0.056 3.944 16 N -0.338 5.338 17 C -0.365 4.365 18 H 0.092 0.908 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.799 3.201 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.043 3.957 26 H 0.032 0.968 27 C 0.005 3.995 28 C 0.163 3.837 29 O -0.300 6.300 30 N -0.246 5.246 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.203 0.797 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.020 0.980 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -27.934 0.310 0.615 27.942 hybrid contribution 2.476 0.046 1.263 2.780 sum -25.457 0.355 1.878 25.529 Atomic orbital electron populations 1.20934 0.85335 1.05055 1.04774 1.21906 0.98717 0.86629 0.90281 1.22161 0.92406 1.01029 1.03364 1.20513 0.94797 0.93488 0.91285 1.20994 0.99255 0.93354 1.04432 1.20700 0.92911 0.95618 1.12695 1.18308 0.87266 0.74968 0.83260 1.90782 1.70472 1.52399 1.32595 1.48215 1.06122 1.70918 1.06648 1.21887 0.95600 1.00588 0.83021 1.21793 0.93183 0.98852 1.00610 1.22184 0.95267 0.99426 0.94771 0.90923 1.22580 0.94689 0.99050 0.99374 1.21376 0.93476 0.95435 0.84136 1.44437 1.00111 1.75011 1.14192 1.19327 0.86138 1.35484 0.95526 0.90798 1.25532 0.99126 1.02026 0.98727 1.70145 1.16818 1.52197 1.20466 0.85127 0.79381 0.77146 0.78442 1.19670 1.21577 1.21740 1.21002 0.84771 0.94613 0.95312 0.96834 1.21273 0.78413 0.99236 1.00555 1.19053 0.86787 0.84253 0.93644 1.84634 1.76915 1.32872 1.35619 1.67145 1.08424 1.32001 1.17017 0.88410 0.90635 0.87386 0.79695 0.88378 0.87141 0.93820 0.90879 0.88995 0.86944 0.90648 0.89580 0.90703 0.97992 0.95948 0.94326 0.92156 0.91861 0.72184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.16 71.24 0.72 -0.06 16 2 C 0.16 2.53 6.78 42.58 0.29 2.82 16 3 C -0.17 -2.26 9.41 22.32 0.21 -2.05 16 4 C 0.01 0.14 5.67 -19.42 -0.11 0.03 16 5 C -0.12 -2.19 9.69 71.24 0.69 -1.50 16 6 C -0.21 -5.56 3.65 -19.91 -0.07 -5.63 16 7 C 0.57 19.27 5.28 86.69 0.46 19.72 16 8 O -0.58 -24.50 16.48 -4.01 -0.07 -24.56 16 9 N -0.59 -18.93 3.02 -823.45 -2.48 -21.42 16 10 C 0.11 2.68 6.24 86.66 0.54 3.22 16 11 C -0.11 -2.38 5.72 30.56 0.17 -2.20 16 12 C -0.10 -3.11 2.62 -10.08 -0.03 -3.13 16 13 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 14 C -0.12 -4.06 6.54 31.62 0.21 -3.85 16 15 C 0.18 8.82 5.46 86.85 0.47 9.30 16 16 N -0.61 -31.79 3.35 -670.13 -2.24 -34.04 16 17 C -0.24 -13.58 9.88 84.03 0.83 -12.75 16 18 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 19 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 20 N -0.95 -57.58 10.43 21.65 0.23 -57.35 16 21 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 C 0.15 6.24 2.74 45.44 0.12 6.37 16 26 H 0.01 0.61 7.93 -2.39 -0.02 0.59 16 27 C 0.13 5.15 5.65 85.58 0.48 5.63 16 28 C 0.34 8.71 7.77 85.13 0.66 9.38 16 29 O -0.49 -12.54 13.01 -87.21 -1.13 -13.67 16 30 N -0.53 -11.86 10.28 -296.06 -3.04 -14.90 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.23 8.07 -2.39 -0.02 0.21 16 34 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 35 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.11 1.25 8.10 -2.38 -0.02 1.23 16 37 H 0.04 1.10 7.19 -2.39 -0.02 1.08 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.93 6.06 -2.39 -0.01 1.92 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.63 7.99 -2.39 -0.02 1.61 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 44 H 0.00 0.10 7.77 -2.39 -0.02 0.08 16 45 H 0.02 1.23 7.19 -2.39 -0.02 1.21 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.06 2.79 6.75 -2.39 -0.02 2.77 16 48 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 49 H 0.42 7.73 9.06 -74.06 -0.67 7.06 16 Total: -1.00 -80.19 389.33 -0.30 -80.48 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.30 Total: 13.79 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 6.12 Total: 22.20 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -7.55 Total: -127.71 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.20 Total: -38.23 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -80.19 -0.30 -80.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042175042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.837 kcal (2) G-P(sol) polarization free energy of solvation -80.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds