Wall clock time and date at job start Wed Apr 1 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37993 * 120.82420 * 2 1 4 4 C 1.39118 * 119.26794 * 179.97438 * 3 2 1 5 5 O 1.35504 * 119.52953 * 179.97438 * 4 3 2 6 6 N 1.32441 * 120.95063 * 0.02562 * 4 3 2 7 7 C 1.31645 * 121.79596 * 359.72701 * 6 4 3 8 8 C 1.50696 * 119.68390 * 180.26860 * 7 6 4 9 9 C 1.39563 * 120.62436 * 0.53151 * 7 6 4 10 10 C 1.47615 * 120.49696 * 179.75446 * 9 7 6 11 11 O 1.21585 * 119.99770 * 269.72458 * 10 9 7 12 12 N 1.34772 * 119.99970 * 89.72383 * 10 9 7 13 13 C 1.46592 * 119.75545 * 0.02562 * 12 10 9 14 14 C 1.53888 * 110.71336 * 227.74630 * 13 12 10 15 15 C 1.51981 * 107.29057 * 308.18838 * 14 13 12 16 16 H 1.09003 * 111.57123 * 303.14272 * 15 14 13 17 17 C 1.53701 * 115.00050 * 175.43279 * 15 14 13 18 18 C 1.55298 * 101.81807 * 206.54492 * 17 15 14 19 19 N 1.48155 * 107.04136 * 22.44042 * 18 17 15 20 20 C 1.36938 * 126.39922 * 184.98646 * 19 18 17 21 21 H 1.08000 * 119.99888 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99911 * 0.02562 * 20 19 18 23 23 N 1.31616 * 120.00092 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00120 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46875 * 60.00601 * 24 22 20 26 26 H 1.48494 * 109.47096 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47384 * 300.00795 * 24 22 20 28 28 C 1.45506 * 107.20637 * 5.00768 * 19 18 17 29 29 H 1.09000 * 109.57019 * 86.61662 * 28 19 18 30 30 C 1.47802 * 119.75527 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.47079 * 270.01960 * 1 2 3 32 32 H 1.09000 * 109.47223 * 30.01437 * 1 2 3 33 33 H 1.09000 * 109.47394 * 150.01829 * 1 2 3 34 34 H 1.08007 * 120.36356 * 359.96585 * 3 2 1 35 35 H 0.96701 * 113.99803 * 89.99924 * 5 4 3 36 36 H 1.09000 * 109.46921 * 270.26307 * 8 7 6 37 37 H 1.09000 * 109.47767 * 30.26617 * 8 7 6 38 38 H 1.08998 * 109.47238 * 150.26671 * 8 7 6 39 39 H 1.08994 * 109.22884 * 107.42796 * 13 12 10 40 40 H 1.08999 * 109.23129 * 348.06263 * 13 12 10 41 41 H 1.09002 * 109.89504 * 188.74384 * 14 13 12 42 42 H 1.09001 * 109.95622 * 67.66829 * 14 13 12 43 43 H 1.09005 * 110.96241 * 88.40908 * 17 15 14 44 44 H 1.09001 * 110.95670 * 324.67381 * 17 15 14 45 45 H 1.08994 * 109.91647 * 263.09713 * 18 17 15 46 46 H 1.08997 * 109.91954 * 141.79297 * 18 17 15 47 47 H 0.97001 * 120.00358 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.06235 * 9.52077 * 30 12 10 49 49 H 1.08998 * 110.06013 * 247.96240 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3077 0.0000 6 7 4.2548 -0.0067 0.0005 7 6 3.6204 -1.1602 0.0054 8 6 4.4080 -2.4450 0.0113 9 6 2.2255 -1.2044 -0.0004 10 6 1.5170 -2.4995 -0.0004 11 8 1.2253 -3.0328 -1.0534 12 7 1.1936 -3.0906 1.1667 13 6 1.5475 -2.4426 2.4331 14 6 2.2127 -3.4466 3.3911 15 6 1.3002 -4.6587 3.4799 16 1 0.2977 -4.3826 3.8067 17 6 1.8516 -5.8272 4.3123 18 6 1.1279 -7.0431 3.6723 19 7 0.7254 -6.6384 2.3051 20 6 -0.0228 -7.3756 1.4265 21 1 -0.2565 -6.9778 0.4500 22 6 -0.4810 -8.6342 1.7911 23 7 -0.1967 -9.1188 2.9813 24 14 -1.5011 -9.6402 0.5924 25 1 -0.7125 -9.8890 -0.6412 26 1 -1.8640 -10.9370 1.2183 27 1 -2.7378 -8.8943 0.2473 28 6 1.2740 -5.3114 2.0700 29 1 2.2918 -5.3991 1.6900 30 6 0.4848 -4.3876 1.1604 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5140 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6936 2.1314 -0.0006 35 1 4.5071 2.6451 0.8833 36 1 4.6022 -2.7567 -1.0150 37 1 5.3544 -2.2887 0.5289 38 1 3.8369 -3.2188 0.5241 39 1 0.6448 -2.0466 2.8982 40 1 2.2382 -1.6227 2.2361 41 1 2.3291 -2.9970 4.3772 42 1 3.1865 -3.7432 3.0016 43 1 1.5798 -5.7203 5.3625 44 1 2.9322 -5.9120 4.1974 45 1 0.2456 -7.3006 4.2582 46 1 1.8059 -7.8951 3.6229 47 1 -0.5172 -9.9981 3.2362 48 1 0.4564 -4.7932 0.1491 49 1 -0.5282 -4.2619 1.5427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042366245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:19 Heat of formation + Delta-G solvation = -8.810371 kcal Electronic energy + Delta-G solvation = -31730.964529 eV Core-core repulsion = 27659.047181 eV Total energy + Delta-G solvation = -4071.917348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.31359 -39.88993 -38.36961 -37.31993 -35.42806 -34.57351 -32.94665 -32.13179 -31.26806 -29.55294 -28.58359 -28.33697 -27.75484 -24.83908 -24.42065 -23.06314 -22.30492 -21.59064 -20.31917 -19.95632 -19.28461 -18.67744 -17.46598 -17.43462 -16.54673 -16.25812 -15.82399 -14.96371 -14.83886 -14.50249 -14.39392 -14.22373 -14.01537 -13.80139 -13.62369 -13.52143 -13.33482 -13.09873 -12.96886 -12.61184 -12.50551 -12.38981 -12.27159 -12.13072 -11.92195 -11.89253 -11.55977 -11.36204 -10.97393 -10.85083 -10.75892 -10.22245 -10.15289 -10.01112 -9.92744 -9.81762 -9.68586 -9.58472 -9.51483 -9.01143 -8.64637 -8.52365 -6.88207 -5.73700 -3.07743 0.50468 0.84148 2.53776 2.88560 3.16686 3.36142 3.41532 3.45988 3.47306 4.16840 4.21191 4.36010 4.49186 4.72163 4.82889 4.87156 4.92196 5.01840 5.10884 5.20580 5.25366 5.27904 5.34805 5.44327 5.46554 5.58177 5.61344 5.63472 5.69483 5.73110 5.84978 5.87577 5.88495 5.96950 6.02818 6.07818 6.12434 6.15881 6.32332 6.42616 6.51947 6.64648 6.70053 7.00543 7.11410 7.41709 7.52864 7.58125 7.59282 7.79022 8.15044 8.21475 9.16986 9.80004 10.46236 11.38469 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003044 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.395535 B = 9195.167175 C = 9807.702420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.009 3.991 3 C -0.196 4.196 4 C 0.327 3.673 5 O -0.481 6.481 6 N -0.505 5.505 7 C 0.194 3.806 8 C -0.114 4.114 9 C -0.181 4.181 10 C 0.567 3.433 11 O -0.528 6.528 12 N -0.596 5.596 13 C 0.110 3.890 14 C -0.119 4.119 15 C -0.112 4.112 16 H 0.078 0.922 17 C -0.138 4.138 18 C 0.178 3.822 19 N -0.591 5.591 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.157 3.843 29 H 0.024 0.976 30 C 0.115 3.885 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.402 0.598 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.253 0.747 48 H 0.094 0.906 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 21.663 1.888 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.001 3.999 3 C -0.217 4.217 4 C 0.149 3.851 5 O -0.288 6.288 6 N -0.225 5.225 7 C 0.056 3.944 8 C -0.171 4.171 9 C -0.186 4.186 10 C 0.353 3.647 11 O -0.404 6.404 12 N -0.329 5.329 13 C -0.013 4.013 14 C -0.157 4.157 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.316 5.316 20 C -0.358 4.358 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.048 3.952 29 H 0.041 0.959 30 C -0.007 4.007 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.260 0.740 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.112 0.888 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.256 21.136 0.725 22.054 hybrid contribution -1.268 -0.324 -0.075 1.311 sum 4.987 20.812 0.650 21.411 Atomic orbital electron populations 1.20945 0.89279 1.04322 1.03570 1.20204 0.97010 0.90796 0.91891 1.21849 0.93706 0.99268 1.06879 1.19229 0.87019 0.85039 0.93857 1.84738 1.76014 1.34067 1.34014 1.66999 1.41812 0.97785 1.15935 1.21058 0.89142 0.93148 0.91079 1.20896 1.00421 0.91524 1.04257 1.20734 0.94915 0.94566 1.08393 1.17934 0.78725 0.83903 0.84138 1.90836 1.54194 1.64503 1.30866 1.48297 1.57036 1.22408 1.05151 1.21693 0.99835 0.95252 0.84503 1.21798 0.99238 0.96074 0.98598 1.22268 0.98857 0.93812 0.98290 0.90387 1.22732 0.99539 0.96971 0.98389 1.21543 0.97135 0.91519 0.84461 1.44157 1.61267 1.12361 1.13844 1.18990 1.24677 0.97078 0.95075 0.90311 1.24775 1.00849 0.97480 0.97020 1.69927 1.49668 1.18243 1.19015 0.86229 0.80144 0.79480 0.80123 1.21076 1.21631 1.21097 1.20975 0.95377 0.86473 0.92379 0.95859 1.21820 0.95185 0.80772 1.02923 0.89704 0.90227 0.90224 0.83685 0.74012 0.89345 0.89584 0.89983 0.91561 0.90874 0.90812 0.91287 0.92228 0.92529 0.92621 0.94413 0.93683 0.88798 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.69 36.01 0.35 -0.77 16 2 C 0.01 0.10 5.95 -103.96 -0.62 -0.52 16 3 C -0.20 -1.83 9.72 -39.34 -0.38 -2.21 16 4 C 0.33 3.50 7.74 -16.96 -0.13 3.37 16 5 O -0.48 -4.16 13.55 -18.20 -0.25 -4.40 16 6 N -0.51 -6.37 10.29 -9.20 -0.09 -6.47 16 7 C 0.19 2.48 6.53 -82.18 -0.54 1.94 16 8 C -0.11 -1.34 9.78 36.00 0.35 -0.99 16 9 C -0.18 -2.34 3.65 -104.82 -0.38 -2.73 16 10 C 0.57 8.76 4.18 -12.44 -0.05 8.70 16 11 O -0.53 -10.23 16.47 5.29 0.09 -10.14 16 12 N -0.60 -8.68 3.01 -173.94 -0.52 -9.20 16 13 C 0.11 1.26 6.23 -3.53 -0.02 1.24 16 14 C -0.12 -1.42 5.72 -26.79 -0.15 -1.58 16 15 C -0.11 -1.79 2.61 -89.51 -0.23 -2.02 16 16 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 17 C -0.14 -2.39 6.54 -25.15 -0.16 -2.55 16 18 C 0.18 4.12 5.45 -1.91 -0.01 4.11 16 19 N -0.59 -14.42 3.35 -162.91 -0.55 -14.96 16 20 C -0.23 -6.23 9.88 -15.06 -0.15 -6.38 16 21 H 0.08 2.09 7.41 -52.49 -0.39 1.70 16 22 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 23 N -0.92 -26.54 10.44 55.49 0.58 -25.96 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 C 0.16 3.06 2.76 -67.82 -0.19 2.88 16 29 H 0.02 0.50 7.93 -51.93 -0.41 0.08 16 30 C 0.11 2.06 5.69 -3.95 -0.02 2.04 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.08 0.89 7.18 -51.93 -0.37 0.52 16 34 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.40 1.32 9.06 45.56 0.41 1.73 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.04 7.06 -51.93 -0.37 0.67 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.75 6.06 -51.93 -0.31 0.44 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 45 H 0.06 1.43 7.21 -51.93 -0.37 1.06 16 46 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.09 1.92 6.76 -51.93 -0.35 1.57 16 49 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -33.54 387.72 -9.13 -42.67 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.77 Total: 1.30 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.44 Total: 4.30 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.58 Total: -56.59 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.16 Total: -14.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.54 -9.13 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042366245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.864 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds