Wall clock time and date at job start Wed Apr 1 2020 03:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37993 * 120.82420 * 2 1 4 4 C 1.39118 * 119.26794 * 179.97438 * 3 2 1 5 5 O 1.35504 * 119.52953 * 179.97438 * 4 3 2 6 6 N 1.32441 * 120.95063 * 0.02562 * 4 3 2 7 7 C 1.31645 * 121.79596 * 359.72701 * 6 4 3 8 8 C 1.50696 * 119.68390 * 180.26860 * 7 6 4 9 9 C 1.39563 * 120.62436 * 0.53151 * 7 6 4 10 10 C 1.47615 * 120.49696 * 179.75446 * 9 7 6 11 11 O 1.21585 * 119.99770 * 269.72458 * 10 9 7 12 12 N 1.34772 * 119.99970 * 89.72383 * 10 9 7 13 13 C 1.46592 * 119.75545 * 0.02562 * 12 10 9 14 14 C 1.53888 * 110.71336 * 227.74630 * 13 12 10 15 15 C 1.51981 * 107.29057 * 308.18838 * 14 13 12 16 16 H 1.09003 * 111.57123 * 303.14272 * 15 14 13 17 17 C 1.53701 * 115.00050 * 175.43279 * 15 14 13 18 18 C 1.55298 * 101.81807 * 206.54492 * 17 15 14 19 19 N 1.48155 * 107.04136 * 22.44042 * 18 17 15 20 20 C 1.36938 * 126.39922 * 184.98646 * 19 18 17 21 21 H 1.08000 * 119.99888 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99911 * 0.02562 * 20 19 18 23 23 N 1.31616 * 120.00092 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00120 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46875 * 60.00601 * 24 22 20 26 26 H 1.48494 * 109.47096 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47384 * 300.00795 * 24 22 20 28 28 C 1.45506 * 107.20637 * 5.00768 * 19 18 17 29 29 H 1.09000 * 109.57019 * 86.61662 * 28 19 18 30 30 C 1.47802 * 119.75527 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.47079 * 270.01960 * 1 2 3 32 32 H 1.09000 * 109.47223 * 30.01437 * 1 2 3 33 33 H 1.09000 * 109.47394 * 150.01829 * 1 2 3 34 34 H 1.08007 * 120.36356 * 359.96585 * 3 2 1 35 35 H 0.96701 * 113.99803 * 89.99924 * 5 4 3 36 36 H 1.09000 * 109.46921 * 270.26307 * 8 7 6 37 37 H 1.09000 * 109.47767 * 30.26617 * 8 7 6 38 38 H 1.08998 * 109.47238 * 150.26671 * 8 7 6 39 39 H 1.08994 * 109.22884 * 107.42796 * 13 12 10 40 40 H 1.08999 * 109.23129 * 348.06263 * 13 12 10 41 41 H 1.09002 * 109.89504 * 188.74384 * 14 13 12 42 42 H 1.09001 * 109.95622 * 67.66829 * 14 13 12 43 43 H 1.09005 * 110.96241 * 88.40908 * 17 15 14 44 44 H 1.09001 * 110.95670 * 324.67381 * 17 15 14 45 45 H 1.08994 * 109.91647 * 263.09713 * 18 17 15 46 46 H 1.08997 * 109.91954 * 141.79297 * 18 17 15 47 47 H 0.97001 * 120.00358 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.06235 * 9.52077 * 30 12 10 49 49 H 1.08998 * 110.06013 * 247.96240 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3077 0.0000 6 7 4.2548 -0.0067 0.0005 7 6 3.6204 -1.1602 0.0054 8 6 4.4080 -2.4450 0.0113 9 6 2.2255 -1.2044 -0.0004 10 6 1.5170 -2.4995 -0.0004 11 8 1.2253 -3.0328 -1.0534 12 7 1.1936 -3.0906 1.1667 13 6 1.5475 -2.4426 2.4331 14 6 2.2127 -3.4466 3.3911 15 6 1.3002 -4.6587 3.4799 16 1 0.2977 -4.3826 3.8067 17 6 1.8516 -5.8272 4.3123 18 6 1.1279 -7.0431 3.6723 19 7 0.7254 -6.6384 2.3051 20 6 -0.0228 -7.3756 1.4265 21 1 -0.2565 -6.9778 0.4500 22 6 -0.4810 -8.6342 1.7911 23 7 -0.1967 -9.1188 2.9813 24 14 -1.5011 -9.6402 0.5924 25 1 -0.7125 -9.8890 -0.6412 26 1 -1.8640 -10.9370 1.2183 27 1 -2.7378 -8.8943 0.2473 28 6 1.2740 -5.3114 2.0700 29 1 2.2918 -5.3991 1.6900 30 6 0.4848 -4.3876 1.1604 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5140 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6936 2.1314 -0.0006 35 1 4.5071 2.6451 0.8833 36 1 4.6022 -2.7567 -1.0150 37 1 5.3544 -2.2887 0.5289 38 1 3.8369 -3.2188 0.5241 39 1 0.6448 -2.0466 2.8982 40 1 2.2382 -1.6227 2.2361 41 1 2.3291 -2.9970 4.3772 42 1 3.1865 -3.7432 3.0016 43 1 1.5798 -5.7203 5.3625 44 1 2.9322 -5.9120 4.1974 45 1 0.2456 -7.3006 4.2582 46 1 1.8059 -7.8951 3.6229 47 1 -0.5172 -9.9981 3.2362 48 1 0.4564 -4.7932 0.1491 49 1 -0.5282 -4.2619 1.5427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042366245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:18 Heat of formation + Delta-G solvation = -33.947089 kcal Electronic energy + Delta-G solvation = -31732.054539 eV Core-core repulsion = 27659.047181 eV Total energy + Delta-G solvation = -4073.007358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29086 -41.03791 -39.69592 -38.13747 -36.88496 -35.38655 -34.66926 -33.12780 -32.81095 -30.95444 -30.18598 -29.08347 -28.74803 -26.54440 -25.78182 -24.15977 -23.57963 -22.40655 -21.80328 -21.49092 -20.52514 -19.42145 -18.79928 -18.35828 -18.19545 -17.39034 -16.84927 -16.64372 -16.18196 -15.76267 -15.71859 -15.44679 -15.18114 -14.94391 -14.77285 -14.48717 -14.36969 -14.18711 -14.06838 -13.81906 -13.72615 -13.56235 -13.37852 -13.15997 -13.13795 -13.04070 -12.95774 -12.72818 -12.61452 -12.54466 -12.14834 -12.02808 -11.76691 -11.53013 -11.39256 -11.27034 -11.03532 -10.71945 -10.62454 -10.51354 -9.88465 -9.76919 -8.90268 -7.86067 -5.20709 -0.33248 0.03418 1.35307 1.44059 1.46337 1.52486 1.77677 2.33846 2.49367 2.56000 3.27237 3.32279 3.36251 3.47458 3.51890 3.77476 3.91991 3.96255 3.98389 4.16496 4.25458 4.26543 4.28080 4.32841 4.38206 4.49385 4.53306 4.53395 4.61676 4.63430 4.71396 4.79875 4.83554 4.87982 4.90200 4.96027 5.06116 5.10180 5.12378 5.15616 5.22863 5.35800 5.40315 5.49196 5.59651 5.67753 5.79407 6.19451 6.25827 6.57375 6.80867 6.96101 7.08541 7.77109 8.43769 9.24594 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003044 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.395535 B = 9195.167175 C = 9807.702420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.011 3.989 3 C -0.182 4.182 4 C 0.329 3.671 5 O -0.486 6.486 6 N -0.525 5.525 7 C 0.188 3.812 8 C -0.112 4.112 9 C -0.199 4.199 10 C 0.573 3.427 11 O -0.579 6.579 12 N -0.590 5.590 13 C 0.107 3.893 14 C -0.109 4.109 15 C -0.094 4.094 16 H 0.079 0.921 17 C -0.122 4.122 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.237 4.237 21 H 0.075 0.925 22 C -0.060 4.060 23 N -0.948 5.948 24 Si 0.969 3.031 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.276 1.276 28 C 0.149 3.851 29 H 0.010 0.990 30 C 0.129 3.871 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.180 0.820 35 H 0.426 0.574 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.023 0.977 46 H -0.002 1.002 47 H 0.247 0.753 48 H 0.059 0.941 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 25.716 3.023 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.003 3.997 3 C -0.203 4.203 4 C 0.151 3.849 5 O -0.297 6.297 6 N -0.246 5.246 7 C 0.049 3.951 8 C -0.169 4.169 9 C -0.204 4.204 10 C 0.360 3.640 11 O -0.459 6.459 12 N -0.322 5.322 13 C -0.014 4.014 14 C -0.147 4.147 15 C -0.114 4.114 16 H 0.097 0.903 17 C -0.160 4.160 18 C 0.056 3.944 19 N -0.337 5.337 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.254 4.254 23 N -0.597 5.597 24 Si 0.798 3.202 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.202 1.202 28 C 0.041 3.959 29 H 0.027 0.973 30 C 0.005 3.995 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.197 0.803 35 H 0.288 0.712 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.017 0.983 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.637 25.256 1.901 26.183 hybrid contribution -1.308 -1.477 -0.463 2.026 sum 5.329 23.780 1.438 24.412 Atomic orbital electron populations 1.20997 0.88101 1.04093 1.04749 1.20435 0.97856 0.90378 0.91045 1.22102 0.93104 0.99962 1.05090 1.19484 0.87768 0.85012 0.92638 1.84696 1.75801 1.32994 1.36206 1.67008 1.42356 0.98258 1.16980 1.21013 0.89023 0.93444 0.91592 1.20855 1.00993 0.91236 1.03802 1.20525 0.95002 0.93769 1.11105 1.18322 0.77824 0.84478 0.83353 1.90804 1.56269 1.66072 1.32734 1.48281 1.56299 1.20997 1.06589 1.21972 1.01420 0.95302 0.82710 1.21791 0.97929 0.94189 1.00837 1.22187 1.00030 0.94697 0.94490 0.90254 1.22602 0.99581 0.94340 0.99482 1.21355 0.95510 0.93274 0.84213 1.44415 1.60949 1.14367 1.13995 1.19268 1.24286 0.97529 0.95527 0.90668 1.25522 1.02520 0.98651 0.98664 1.70133 1.50904 1.18145 1.20470 0.85290 0.78904 0.77898 0.78117 1.20940 1.21758 1.20230 1.21123 0.94179 0.85110 0.95526 0.97280 1.21383 0.95343 0.82303 1.00447 0.87747 0.87712 0.93141 0.80269 0.71187 0.90183 0.88003 0.91299 0.89210 0.88816 0.86873 0.91435 0.89546 0.91213 0.95870 0.98338 0.94371 0.92265 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.69 71.24 0.69 -1.17 16 2 C 0.01 0.20 5.95 -19.43 -0.12 0.08 16 3 C -0.18 -2.64 9.72 22.42 0.22 -2.43 16 4 C 0.33 5.92 7.74 84.81 0.66 6.58 16 5 O -0.49 -6.56 13.55 -88.05 -1.19 -7.75 16 6 N -0.53 -12.06 10.29 -295.88 -3.04 -15.11 16 7 C 0.19 4.54 6.53 42.91 0.28 4.82 16 8 C -0.11 -2.61 9.78 71.23 0.70 -1.91 16 9 C -0.20 -4.88 3.65 -19.99 -0.07 -4.96 16 10 C 0.57 17.77 4.18 86.72 0.36 18.13 16 11 O -0.58 -23.56 16.47 -3.98 -0.07 -23.63 16 12 N -0.59 -16.84 3.01 -822.49 -2.47 -19.32 16 13 C 0.11 2.11 6.23 86.66 0.54 2.65 16 14 C -0.11 -2.23 5.72 30.56 0.17 -2.05 16 15 C -0.09 -2.83 2.61 -10.07 -0.03 -2.86 16 16 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 17 C -0.12 -4.07 6.54 31.62 0.21 -3.86 16 18 C 0.18 8.72 5.45 86.85 0.47 9.20 16 19 N -0.61 -31.09 3.35 -669.33 -2.24 -33.33 16 20 C -0.24 -13.41 9.88 84.03 0.83 -12.58 16 21 H 0.08 4.19 7.41 -2.91 -0.02 4.17 16 22 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 23 N -0.95 -57.05 10.44 21.65 0.23 -56.83 16 24 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 C 0.15 5.91 2.76 45.59 0.13 6.03 16 29 H 0.01 0.41 7.93 -2.39 -0.02 0.40 16 30 C 0.13 4.76 5.69 85.73 0.49 5.24 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 33 H 0.05 1.09 7.18 -2.39 -0.02 1.07 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.43 1.04 9.06 -74.06 -0.67 0.37 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.76 7.06 -2.39 -0.02 1.74 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.56 6.06 -2.39 -0.01 1.55 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.46 7.98 -2.39 -0.02 1.44 16 43 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 45 H 0.02 1.24 7.21 -2.39 -0.02 1.23 16 46 H 0.00 -0.09 7.77 -2.39 -0.02 -0.11 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 48 H 0.06 2.59 6.76 -2.39 -0.02 2.58 16 49 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -78.85 387.72 -0.47 -79.31 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.30 Total: 9.88 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 5.99 Total: 17.93 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -7.53 Total: -124.58 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.26 Total: -31.38 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.85 -0.47 -79.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042366245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.366 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds