Wall clock time and date at job start Wed Apr 1 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46181 * 2 1 4 4 C 1.34773 * 119.99934 * 59.72892 * 3 2 1 5 5 O 1.21511 * 120.00198 * 0.27101 * 4 3 2 6 6 C 1.48169 * 119.99846 * 180.27734 * 4 3 2 7 7 C 1.39610 * 120.89178 * 359.71212 * 6 4 3 8 8 C 1.38851 * 118.95139 * 179.78173 * 7 6 4 9 9 O 1.35678 * 119.62482 * 180.22867 * 8 7 6 10 10 N 1.32204 * 120.74844 * 0.50709 * 8 7 6 11 11 C 1.31873 * 121.97580 * 359.74183 * 10 8 7 12 12 C 1.50703 * 119.51558 * 180.02562 * 11 10 8 13 13 C 1.52992 * 117.50236 * 163.60031 * 12 11 10 14 14 C 1.53000 * 60.00202 * 252.51093 * 13 12 11 15 15 C 1.38017 * 120.97725 * 0.02562 * 11 10 8 16 16 C 1.53042 * 109.46138 * 119.97536 * 2 1 3 17 17 C 1.53161 * 109.32874 * 181.38369 * 16 2 1 18 18 N 1.46928 * 108.76953 * 305.35311 * 17 16 2 19 19 C 1.36934 * 120.62831 * 233.63395 * 18 17 16 20 20 H 1.08005 * 119.99784 * 151.80975 * 19 18 17 21 21 C 1.38809 * 120.00218 * 331.80502 * 19 18 17 22 22 N 1.31620 * 119.99917 * 343.08636 * 21 19 18 23 23 Si 1.86808 * 120.00053 * 163.08789 * 21 19 18 24 24 H 1.48493 * 109.46947 * 90.00034 * 23 21 19 25 25 H 1.48502 * 109.46963 * 210.00206 * 23 21 19 26 26 H 1.48500 * 109.47015 * 329.99939 * 23 21 19 27 27 C 1.46923 * 118.73711 * 53.61097 * 18 17 16 28 28 C 1.53049 * 109.45896 * 240.02516 * 2 1 3 29 29 H 1.09004 * 109.47015 * 59.99670 * 1 2 3 30 30 H 1.09000 * 109.47507 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46829 * 300.00463 * 1 2 3 32 32 H 0.97000 * 119.99792 * 239.99971 * 3 2 1 33 33 H 1.08001 * 120.52411 * 0.02562 * 7 6 4 34 34 H 0.96698 * 114.00196 * 270.27557 * 9 8 7 35 35 H 1.09004 * 115.54791 * 309.31636 * 12 11 10 36 36 H 1.09001 * 117.49824 * 0.02562 * 13 12 11 37 37 H 1.09000 * 117.50063 * 145.01874 * 13 12 11 38 38 H 1.08996 * 117.49838 * 252.50729 * 14 13 12 39 39 H 1.09004 * 117.51489 * 107.47849 * 14 13 12 40 40 H 1.07993 * 120.43842 * 180.02562 * 15 11 10 41 41 H 1.09001 * 109.49278 * 301.31927 * 16 2 1 42 42 H 1.09004 * 109.50190 * 61.41327 * 16 2 1 43 43 H 1.09004 * 109.59292 * 185.56628 * 17 16 2 44 44 H 1.09002 * 109.71049 * 65.21062 * 17 16 2 45 45 H 0.97006 * 119.99658 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58787 * 186.60707 * 27 18 17 47 47 H 1.08995 * 109.70837 * 66.25005 * 27 18 17 48 48 H 1.08997 * 109.49340 * 298.57866 * 28 2 1 49 49 H 1.08996 * 109.49479 * 58.64499 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6878 2.2127 1.0080 5 8 0.9893 1.8152 1.9194 6 6 2.1764 3.6115 1.0049 7 6 2.9848 4.0861 -0.0298 8 6 3.4162 5.4054 0.0055 9 8 4.1984 5.8822 -0.9953 10 7 3.0779 6.2006 1.0060 11 6 2.3204 5.7857 2.0025 12 6 1.9681 6.7398 3.1145 13 6 0.8030 6.3586 4.0299 14 6 0.6368 7.4865 3.0095 15 6 1.8454 4.4904 2.0421 16 6 2.0399 -0.7210 1.2500 17 6 3.5711 -0.6890 1.2645 18 7 4.0676 -1.2494 0.0003 19 6 4.9752 -2.2748 0.0005 20 1 5.0025 -2.9720 -0.8240 21 6 5.8602 -2.4182 1.0602 22 7 6.0655 -1.4145 1.8866 23 14 6.7599 -4.0356 1.3135 24 1 8.0442 -4.0095 0.5686 25 1 7.0307 -4.2300 2.7606 26 1 5.9198 -5.1530 0.8127 27 6 3.5714 -0.6891 -1.2640 28 6 2.0398 -0.7210 -1.2501 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.5757 1.6986 -0.7275 33 1 3.2668 3.4384 -0.8467 34 1 5.1464 5.7689 -0.8417 35 1 2.8084 7.2700 3.5629 36 1 0.2915 5.4175 3.8282 37 1 0.8767 6.6377 5.0810 38 1 0.6010 8.5075 3.3893 39 1 0.0158 7.2877 2.1359 40 1 1.2253 4.1599 2.8622 41 1 1.6574 -0.2208 2.1398 42 1 1.6975 -1.7558 1.2383 43 1 3.9412 -1.2850 2.0987 44 1 3.9164 0.3396 1.3688 45 1 6.6837 -1.5148 2.6273 46 1 3.9416 -1.2851 -2.0981 47 1 3.9145 0.3400 -1.3697 48 1 1.6975 -1.7558 -1.2382 49 1 1.6569 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045460124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:38 Heat of formation + Delta-G solvation = 13.445579 kcal Electronic energy + Delta-G solvation = -31189.280862 eV Core-core repulsion = 27118.328605 eV Total energy + Delta-G solvation = -4070.952257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.07513 -39.91731 -38.04981 -37.49215 -36.29169 -34.50527 -33.20132 -31.78461 -30.73953 -30.11764 -29.93488 -27.48505 -25.22671 -24.56029 -24.04016 -22.63830 -22.33733 -21.90703 -21.09977 -20.20996 -18.81343 -18.72549 -17.47971 -17.12227 -16.77294 -15.85758 -15.69647 -15.58670 -14.97793 -14.78744 -14.73837 -14.65165 -13.98738 -13.80697 -13.47077 -13.38028 -13.31871 -13.08267 -12.55603 -12.44128 -12.13257 -12.02545 -11.92621 -11.66935 -11.63668 -11.45114 -11.21482 -10.98372 -10.93334 -10.74079 -10.70034 -10.47069 -10.30440 -10.10353 -9.99312 -9.91304 -9.67046 -9.60203 -9.21053 -8.97005 -8.71439 -8.48974 -6.70050 -5.81664 -3.24907 0.57832 0.76507 2.80139 3.16276 3.26377 3.34922 3.42542 3.44498 3.59830 3.71097 4.12630 4.46366 4.50966 4.62225 4.67301 4.80301 4.84891 4.87522 5.14615 5.21345 5.29805 5.34868 5.36712 5.39521 5.46524 5.54432 5.55766 5.59866 5.81313 5.87168 5.88963 5.92379 5.96293 6.06859 6.13517 6.21863 6.29686 6.38646 6.45755 6.61109 6.67072 6.73456 6.85701 6.98666 7.27132 7.36423 7.65564 7.69508 7.72443 7.77251 8.34554 8.41866 9.18087 9.81421 10.37843 11.26278 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.003036 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.199767 B = 9220.241312 C = 9604.718346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.699 5.699 4 C 0.560 3.440 5 O -0.525 6.525 6 C -0.060 4.060 7 C -0.157 4.157 8 C 0.313 3.687 9 O -0.480 6.480 10 N -0.486 5.486 11 C 0.178 3.822 12 C -0.109 4.109 13 C -0.171 4.171 14 C -0.161 4.161 15 C -0.124 4.124 16 C -0.151 4.151 17 C 0.177 3.823 18 N -0.590 5.590 19 C -0.255 4.255 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.145 3.855 28 C -0.138 4.138 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.146 0.854 34 H 0.404 0.596 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.153 0.847 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.056 0.944 47 H 0.012 0.988 48 H 0.077 0.923 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 14.379 -1.645 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.350 5.350 4 C 0.346 3.654 5 O -0.402 6.402 6 C -0.071 4.071 7 C -0.179 4.179 8 C 0.134 3.866 9 O -0.287 6.287 10 N -0.206 5.206 11 C 0.040 3.960 12 C -0.128 4.128 13 C -0.208 4.208 14 C -0.199 4.199 15 C -0.144 4.144 16 C -0.191 4.191 17 C 0.052 3.948 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.019 3.981 28 C -0.178 4.178 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.163 0.837 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.171 0.829 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.029 0.971 48 H 0.095 0.905 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.453 15.020 -1.201 18.339 hybrid contribution 1.217 -1.547 -0.179 1.977 sum -9.237 13.472 -1.380 16.393 Atomic orbital electron populations 1.22235 0.95182 1.02112 1.02398 1.20356 0.92736 0.79523 0.97533 1.46026 1.52242 1.12208 1.24480 1.17937 0.80622 0.84272 0.82590 1.90704 1.37810 1.76397 1.35333 1.20419 0.96938 0.94996 0.94751 1.22334 0.99919 0.95742 0.99903 1.18875 0.93737 0.87161 0.86789 1.84774 1.21767 1.83748 1.38455 1.66658 1.13843 1.38907 1.01155 1.19965 0.92509 0.91567 0.91938 1.20764 0.93757 1.01178 0.97090 1.23156 1.00582 1.00284 0.96805 1.22983 0.97906 0.97400 1.01587 1.22081 1.00223 0.93015 0.99126 1.22587 1.00852 0.99226 0.96448 1.20681 0.87187 0.96917 0.90037 1.44056 1.48345 1.39567 0.99333 1.19147 1.09734 1.02860 1.06708 0.91763 1.25044 0.97191 0.97385 0.99884 1.70037 1.37308 1.29036 1.18075 0.86327 0.79635 0.83818 0.77155 1.21426 1.21554 1.20480 1.20858 0.90411 0.96131 0.90742 1.22354 0.99726 1.00661 0.95029 0.93391 0.91988 0.90748 0.76671 0.83667 0.73843 0.85726 0.87852 0.87731 0.88023 0.88646 0.82925 0.91016 0.91962 0.89730 0.96677 0.93657 0.92503 0.97061 0.90452 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.40 37.16 0.31 -2.03 16 2 C 0.18 2.99 0.66 -131.77 -0.09 2.90 16 3 N -0.70 -10.67 4.06 -48.40 -0.20 -10.86 16 4 C 0.56 8.98 7.22 -12.18 -0.09 8.89 16 5 O -0.53 -9.58 12.66 5.36 0.07 -9.51 16 6 C -0.06 -0.85 5.91 -104.67 -0.62 -1.47 16 7 C -0.16 -1.99 9.55 -38.84 -0.37 -2.37 16 8 C 0.31 4.04 7.74 -17.16 -0.13 3.91 16 9 O -0.48 -5.29 13.56 -18.74 -0.25 -5.55 16 10 N -0.49 -6.62 10.27 -9.60 -0.10 -6.71 16 11 C 0.18 2.23 6.45 -82.65 -0.53 1.69 16 12 C -0.11 -1.07 6.21 -91.77 -0.57 -1.64 16 13 C -0.17 -1.37 9.79 -26.74 -0.26 -1.63 16 14 C -0.16 -1.32 10.23 -26.73 -0.27 -1.59 16 15 C -0.12 -1.63 8.92 -39.03 -0.35 -1.98 16 16 C -0.15 -2.98 4.67 -26.63 -0.12 -3.11 16 17 C 0.18 4.20 5.04 -3.73 -0.02 4.18 16 18 N -0.59 -14.15 2.99 -172.34 -0.52 -14.67 16 19 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 20 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 23 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C 0.15 2.79 6.24 -3.71 -0.02 2.76 16 28 C -0.14 -2.18 4.96 -26.60 -0.13 -2.31 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.19 6.15 -51.93 -0.32 0.87 16 32 H 0.40 5.43 5.41 -40.82 -0.22 5.21 16 33 H 0.15 1.59 6.53 -52.49 -0.34 1.25 16 34 H 0.40 2.61 9.06 45.56 0.41 3.03 16 35 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.10 0.87 6.38 -51.93 -0.33 0.54 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.15 1.90 5.92 -52.49 -0.31 1.59 16 41 H 0.07 1.46 6.21 -51.93 -0.32 1.14 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.08 2.30 6.06 -51.93 -0.31 1.99 16 44 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -32.49 385.95 -9.37 -41.86 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.28 Total: 9.19 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -3.50 Total: -0.72 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.19 Total: -57.50 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.19 Total: -15.06 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.49 -9.37 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045460124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.301 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds