Wall clock time and date at job start Wed Apr 1 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46181 * 2 1 4 4 C 1.34773 * 119.99934 * 59.72892 * 3 2 1 5 5 O 1.21511 * 120.00198 * 0.27101 * 4 3 2 6 6 C 1.48169 * 119.99846 * 180.27734 * 4 3 2 7 7 C 1.39610 * 120.89178 * 359.71212 * 6 4 3 8 8 C 1.38851 * 118.95139 * 179.78173 * 7 6 4 9 9 O 1.35678 * 119.62482 * 180.22867 * 8 7 6 10 10 N 1.32204 * 120.74844 * 0.50709 * 8 7 6 11 11 C 1.31873 * 121.97580 * 359.74183 * 10 8 7 12 12 C 1.50703 * 119.51558 * 180.02562 * 11 10 8 13 13 C 1.52992 * 117.50236 * 163.60031 * 12 11 10 14 14 C 1.53000 * 60.00202 * 252.51093 * 13 12 11 15 15 C 1.38017 * 120.97725 * 0.02562 * 11 10 8 16 16 C 1.53042 * 109.46138 * 119.97536 * 2 1 3 17 17 C 1.53161 * 109.32874 * 181.38369 * 16 2 1 18 18 N 1.46928 * 108.76953 * 305.35311 * 17 16 2 19 19 C 1.36934 * 120.62831 * 233.63395 * 18 17 16 20 20 H 1.08005 * 119.99784 * 151.80975 * 19 18 17 21 21 C 1.38809 * 120.00218 * 331.80502 * 19 18 17 22 22 N 1.31620 * 119.99917 * 343.08636 * 21 19 18 23 23 Si 1.86808 * 120.00053 * 163.08789 * 21 19 18 24 24 H 1.48493 * 109.46947 * 90.00034 * 23 21 19 25 25 H 1.48502 * 109.46963 * 210.00206 * 23 21 19 26 26 H 1.48500 * 109.47015 * 329.99939 * 23 21 19 27 27 C 1.46923 * 118.73711 * 53.61097 * 18 17 16 28 28 C 1.53049 * 109.45896 * 240.02516 * 2 1 3 29 29 H 1.09004 * 109.47015 * 59.99670 * 1 2 3 30 30 H 1.09000 * 109.47507 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46829 * 300.00463 * 1 2 3 32 32 H 0.97000 * 119.99792 * 239.99971 * 3 2 1 33 33 H 1.08001 * 120.52411 * 0.02562 * 7 6 4 34 34 H 0.96698 * 114.00196 * 270.27557 * 9 8 7 35 35 H 1.09004 * 115.54791 * 309.31636 * 12 11 10 36 36 H 1.09001 * 117.49824 * 0.02562 * 13 12 11 37 37 H 1.09000 * 117.50063 * 145.01874 * 13 12 11 38 38 H 1.08996 * 117.49838 * 252.50729 * 14 13 12 39 39 H 1.09004 * 117.51489 * 107.47849 * 14 13 12 40 40 H 1.07993 * 120.43842 * 180.02562 * 15 11 10 41 41 H 1.09001 * 109.49278 * 301.31927 * 16 2 1 42 42 H 1.09004 * 109.50190 * 61.41327 * 16 2 1 43 43 H 1.09004 * 109.59292 * 185.56628 * 17 16 2 44 44 H 1.09002 * 109.71049 * 65.21062 * 17 16 2 45 45 H 0.97006 * 119.99658 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58787 * 186.60707 * 27 18 17 47 47 H 1.08995 * 109.70837 * 66.25005 * 27 18 17 48 48 H 1.08997 * 109.49340 * 298.57866 * 28 2 1 49 49 H 1.08996 * 109.49479 * 58.64499 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6878 2.2127 1.0080 5 8 0.9893 1.8152 1.9194 6 6 2.1764 3.6115 1.0049 7 6 2.9848 4.0861 -0.0298 8 6 3.4162 5.4054 0.0055 9 8 4.1984 5.8822 -0.9953 10 7 3.0779 6.2006 1.0060 11 6 2.3204 5.7857 2.0025 12 6 1.9681 6.7398 3.1145 13 6 0.8030 6.3586 4.0299 14 6 0.6368 7.4865 3.0095 15 6 1.8454 4.4904 2.0421 16 6 2.0399 -0.7210 1.2500 17 6 3.5711 -0.6890 1.2645 18 7 4.0676 -1.2494 0.0003 19 6 4.9752 -2.2748 0.0005 20 1 5.0025 -2.9720 -0.8240 21 6 5.8602 -2.4182 1.0602 22 7 6.0655 -1.4145 1.8866 23 14 6.7599 -4.0356 1.3135 24 1 8.0442 -4.0095 0.5686 25 1 7.0307 -4.2300 2.7606 26 1 5.9198 -5.1530 0.8127 27 6 3.5714 -0.6891 -1.2640 28 6 2.0398 -0.7210 -1.2501 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.5757 1.6986 -0.7275 33 1 3.2668 3.4384 -0.8467 34 1 5.1464 5.7689 -0.8417 35 1 2.8084 7.2700 3.5629 36 1 0.2915 5.4175 3.8282 37 1 0.8767 6.6377 5.0810 38 1 0.6010 8.5075 3.3893 39 1 0.0158 7.2877 2.1359 40 1 1.2253 4.1599 2.8622 41 1 1.6574 -0.2208 2.1398 42 1 1.6975 -1.7558 1.2383 43 1 3.9412 -1.2850 2.0987 44 1 3.9164 0.3396 1.3688 45 1 6.6837 -1.5148 2.6273 46 1 3.9416 -1.2851 -2.0981 47 1 3.9145 0.3400 -1.3697 48 1 1.6975 -1.7558 -1.2382 49 1 1.6569 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045460124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:36 Heat of formation + Delta-G solvation = -9.544968 kcal Electronic energy + Delta-G solvation = -31190.277807 eV Core-core repulsion = 27118.328605 eV Total energy + Delta-G solvation = -4071.949202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.14802 -41.14579 -39.00409 -38.78358 -37.15629 -36.17531 -34.38366 -33.42471 -32.14790 -31.61718 -31.06633 -29.09356 -26.28129 -25.92819 -25.41888 -23.95904 -23.38839 -22.85406 -22.55130 -21.39065 -20.25061 -19.73421 -18.83590 -18.36827 -18.02412 -16.92261 -16.83112 -16.67199 -16.51271 -16.14601 -16.05044 -15.63386 -15.42969 -15.25087 -15.01581 -14.88497 -14.66915 -14.21599 -14.03123 -13.45200 -13.32274 -13.22693 -12.99291 -12.97443 -12.88611 -12.83338 -12.57438 -12.56242 -12.29728 -12.26408 -11.98348 -11.78348 -11.68430 -11.51662 -11.37767 -11.33464 -10.98990 -10.89797 -10.53398 -10.45905 -10.05635 -9.90346 -8.66360 -7.87243 -5.32354 -0.48469 -0.19943 1.44743 1.47428 1.56073 1.70264 1.99794 2.31128 2.50667 2.61651 2.92966 3.23752 3.28281 3.44874 3.70806 3.78210 3.81326 3.84278 3.94948 4.03164 4.05168 4.09404 4.11524 4.26688 4.47810 4.50919 4.57847 4.66942 4.70381 4.73731 4.78323 4.85971 4.87254 4.94294 5.02227 5.04015 5.13118 5.15311 5.19395 5.23345 5.31071 5.33471 5.36433 5.49312 5.58605 5.65123 5.75243 6.38491 6.47338 6.51439 6.75624 7.11376 7.14790 7.87174 8.38271 9.18357 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.003036 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.199767 B = 9220.241312 C = 9604.718346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.185 3.815 3 N -0.694 5.694 4 C 0.559 3.441 5 O -0.552 6.552 6 C -0.074 4.074 7 C -0.157 4.157 8 C 0.312 3.688 9 O -0.483 6.483 10 N -0.502 5.502 11 C 0.177 3.823 12 C -0.128 4.128 13 C -0.163 4.163 14 C -0.152 4.152 15 C -0.132 4.132 16 C -0.139 4.139 17 C 0.193 3.807 18 N -0.607 5.607 19 C -0.259 4.259 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.139 3.861 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.406 0.594 33 H 0.162 0.838 34 H 0.422 0.578 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.155 0.845 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.041 0.959 44 H -0.008 1.008 45 H 0.247 0.753 46 H 0.061 0.939 47 H 0.022 0.978 48 H 0.077 0.923 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 14.946 -3.223 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.100 3.900 3 N -0.345 5.345 4 C 0.345 3.655 5 O -0.432 6.432 6 C -0.084 4.084 7 C -0.178 4.178 8 C 0.133 3.867 9 O -0.294 6.294 10 N -0.222 5.222 11 C 0.040 3.960 12 C -0.147 4.147 13 C -0.200 4.200 14 C -0.190 4.190 15 C -0.152 4.152 16 C -0.179 4.179 17 C 0.067 3.933 18 N -0.330 5.330 19 C -0.389 4.389 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.791 3.209 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.195 1.195 27 C 0.014 3.986 28 C -0.164 4.164 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.179 0.821 34 H 0.284 0.716 35 H 0.150 0.850 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.172 0.828 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.010 0.990 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.040 0.960 48 H 0.096 0.904 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.477 15.591 -2.832 19.566 hybrid contribution 1.562 -1.666 0.275 2.300 sum -9.916 13.925 -2.557 17.284 Atomic orbital electron populations 1.22129 0.93191 1.02944 1.02714 1.20299 0.94132 0.79656 0.95881 1.45957 1.52212 1.11712 1.24662 1.18219 0.80103 0.84995 0.82176 1.90687 1.39102 1.77093 1.36284 1.20353 0.98046 0.94160 0.95888 1.22438 0.99444 0.96031 0.99936 1.19012 0.93764 0.87157 0.86794 1.84729 1.23211 1.83557 1.37876 1.66755 1.14412 1.39339 1.01682 1.20349 0.91661 0.91751 0.92240 1.20881 0.94834 1.01806 0.97159 1.23234 0.99039 1.00065 0.97690 1.23064 0.96125 0.98434 1.01344 1.22186 1.00582 0.93366 0.99116 1.22382 0.97703 0.99552 0.98276 1.20320 0.89585 0.94453 0.88972 1.44268 1.48220 1.39584 1.00945 1.19510 1.09380 1.03573 1.06482 0.91268 1.25774 0.98630 1.00150 1.00136 1.70196 1.38364 1.30833 1.18643 0.85351 0.78615 0.80552 0.76383 1.21049 1.22389 1.19482 1.21084 0.92722 0.96335 0.88491 1.22232 0.96780 1.01171 0.96199 0.91087 0.90912 0.92402 0.75633 0.82089 0.71613 0.85025 0.88517 0.85843 0.86032 0.89348 0.82793 0.92204 0.92275 0.94060 0.99019 0.94425 0.92085 0.96048 0.90450 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.40 71.98 0.60 -3.44 16 2 C 0.19 5.73 0.66 3.63 0.00 5.74 16 3 N -0.69 -20.35 4.06 -425.33 -1.73 -22.08 16 4 C 0.56 17.82 7.22 86.88 0.63 18.45 16 5 O -0.55 -20.43 12.66 -3.75 -0.05 -20.47 16 6 C -0.07 -2.07 5.91 -19.90 -0.12 -2.19 16 7 C -0.16 -3.85 9.55 22.75 0.22 -3.63 16 8 C 0.31 7.75 7.74 84.78 0.66 8.41 16 9 O -0.48 -9.95 13.56 -89.96 -1.22 -11.17 16 10 N -0.50 -13.34 10.27 -297.17 -3.05 -16.40 16 11 C 0.18 4.38 6.45 42.50 0.27 4.66 16 12 C -0.13 -2.40 6.21 -11.54 -0.07 -2.47 16 13 C -0.16 -2.42 9.79 30.59 0.30 -2.12 16 14 C -0.15 -2.26 10.23 30.59 0.31 -1.95 16 15 C -0.13 -3.49 8.92 22.63 0.20 -3.29 16 16 C -0.14 -5.53 4.67 30.66 0.14 -5.39 16 17 C 0.19 9.39 5.04 86.35 0.44 9.82 16 18 N -0.61 -29.09 2.99 -699.15 -2.09 -31.18 16 19 C -0.26 -13.87 9.58 84.03 0.81 -13.07 16 20 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 21 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 22 N -0.93 -55.48 11.20 21.65 0.24 -55.24 16 23 Si 0.96 44.73 29.59 68.60 2.03 46.76 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 C 0.14 5.07 6.24 86.36 0.54 5.61 16 28 C -0.12 -3.55 4.96 30.68 0.15 -3.40 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.77 6.15 -2.39 -0.01 1.76 16 32 H 0.41 10.32 5.41 -92.71 -0.50 9.82 16 33 H 0.16 3.28 6.53 -2.91 -0.02 3.26 16 34 H 0.42 4.83 9.06 -74.06 -0.67 4.16 16 35 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.10 1.58 6.38 -2.39 -0.02 1.56 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.15 3.93 5.92 -2.91 -0.02 3.91 16 41 H 0.06 2.51 6.21 -2.39 -0.01 2.50 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.04 2.35 6.06 -2.39 -0.01 2.34 16 44 H -0.01 -0.43 7.75 -2.39 -0.02 -0.45 16 45 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 46 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 47 H 0.02 0.75 6.94 -2.39 -0.02 0.74 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.69 385.95 -0.54 -72.22 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.17 Total: 28.26 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.50 Total: 9.30 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -6.63 Total: -124.89 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.27 Total: -31.65 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.69 -0.54 -72.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045460124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.679 kcal (2) G-P(sol) polarization free energy of solvation -71.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds