Wall clock time and date at job start Wed Apr 1 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00207 * 2 1 4 4 O 1.21560 * 119.99750 * 359.97438 * 3 2 1 5 5 C 1.47856 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39702 * 120.07194 * 0.02562 * 5 3 2 7 7 C 1.38060 * 120.14413 * 180.02562 * 6 5 3 8 8 C 1.38102 * 120.29458 * 359.68289 * 7 6 5 9 9 C 1.39665 * 120.14194 * 0.59265 * 8 7 6 10 10 C 1.47862 * 120.06969 * 179.69811 * 9 8 7 11 11 O 1.21550 * 120.00199 * 179.45900 * 10 9 8 12 12 N 1.34780 * 120.00254 * 359.72991 * 10 9 8 13 13 C 1.46495 * 120.00106 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.45910 * 60.00420 * 13 12 10 15 15 C 1.53043 * 109.46295 * 300.03052 * 13 12 10 16 16 C 1.53160 * 109.32652 * 301.35840 * 15 13 12 17 17 N 1.46929 * 108.77041 * 305.35546 * 16 15 13 18 18 C 1.36931 * 120.63021 * 233.63375 * 17 16 15 19 19 H 1.08006 * 120.00114 * 152.59891 * 18 17 16 20 20 C 1.38810 * 120.00028 * 332.59902 * 18 17 16 21 21 N 1.31619 * 119.99926 * 159.36915 * 20 18 17 22 22 Si 1.86799 * 119.99877 * 339.36015 * 20 18 17 23 23 H 1.48497 * 109.47038 * 92.90671 * 22 20 18 24 24 H 1.48501 * 109.47104 * 212.90138 * 22 20 18 25 25 H 1.48498 * 109.47222 * 332.90460 * 22 20 18 26 26 C 1.46931 * 118.73654 * 53.60404 * 17 16 15 27 27 C 1.53045 * 109.46123 * 179.97438 * 13 12 10 28 28 C 1.39297 * 120.07371 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47393 * 300.00703 * 1 2 3 31 31 H 1.09008 * 109.47103 * 60.00198 * 1 2 3 32 32 H 0.97003 * 119.99760 * 179.97438 * 2 1 3 33 33 H 1.07996 * 119.93179 * 359.97438 * 6 5 3 34 34 H 1.08002 * 119.85106 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.92828 * 180.32447 * 8 7 6 36 36 H 0.97000 * 119.99848 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.47080 * 59.99948 * 14 13 12 38 38 H 1.09000 * 109.46916 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.46859 * 299.99626 * 14 13 12 40 40 H 1.08996 * 109.49555 * 61.29635 * 15 13 12 41 41 H 1.08991 * 109.49640 * 181.39159 * 15 13 12 42 42 H 1.08997 * 109.58999 * 185.56702 * 16 15 13 43 43 H 1.09000 * 109.71053 * 65.20997 * 16 15 13 44 44 H 0.97007 * 119.99913 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58440 * 186.60318 * 26 17 16 46 46 H 1.08998 * 109.69867 * 66.25559 * 26 17 16 47 47 H 1.08991 * 109.49820 * 178.60518 * 27 13 12 48 48 H 1.08992 * 109.49543 * 298.67546 * 27 13 12 49 49 H 1.07999 * 120.14419 * 0.03920 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0419 0.0006 7 6 5.6981 -0.0436 0.0016 8 6 6.3963 1.1479 -0.0039 9 6 5.7088 2.3636 0.0019 10 6 6.4579 3.6384 0.0027 11 8 5.8584 4.6958 -0.0022 12 7 7.8057 3.6281 0.0034 13 6 8.5479 4.8911 0.0036 14 6 8.1837 5.6961 1.2528 15 6 8.1842 5.6965 -1.2459 16 6 8.5180 4.8740 -2.4941 17 7 9.9281 4.4663 -2.4285 18 6 10.7812 4.7358 -3.4651 19 1 11.8382 4.8549 -3.2777 20 6 10.2876 4.8559 -4.7569 21 7 10.9854 5.4957 -5.6712 22 14 8.6330 4.1093 -5.1976 23 1 7.5682 5.1303 -5.0278 24 1 8.6575 3.6499 -6.6096 25 1 8.3578 2.9541 -4.3060 26 6 10.4055 3.7645 -1.2291 27 6 10.0503 4.5996 0.0050 28 6 4.3155 2.3726 0.0000 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.9500 -0.8401 0.0004 33 1 3.7776 -0.9772 0.0006 34 1 6.2345 -0.9810 0.0021 35 1 7.4762 1.1396 -0.0083 36 1 8.2842 2.7844 0.0029 37 1 8.4422 5.1225 2.1428 38 1 8.7362 6.6357 1.2534 39 1 7.1136 5.9034 1.2522 40 1 7.1183 5.9238 -1.2347 41 1 8.7546 6.6252 -1.2589 42 1 8.3538 5.4794 -3.3854 43 1 7.8831 3.9888 -2.5316 44 1 10.6406 5.5793 -6.5741 45 1 11.4866 3.6379 -1.2859 46 1 9.9264 2.7879 -1.1597 47 1 10.6031 5.5387 -0.0198 48 1 10.3127 4.0467 0.9068 49 1 3.7791 3.3099 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045643187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:33 Heat of formation + Delta-G solvation = -12.665995 kcal Electronic energy + Delta-G solvation = -30991.183985 eV Core-core repulsion = 26919.099444 eV Total energy + Delta-G solvation = -4072.084540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.82326 -40.09551 -38.56044 -37.33149 -35.06093 -34.64486 -32.73173 -31.63514 -31.38978 -30.58048 -30.45497 -27.72298 -27.32130 -24.53933 -23.94904 -23.37557 -22.82877 -21.60945 -21.13879 -20.31921 -18.93423 -18.87400 -17.06347 -16.79269 -16.46190 -16.28408 -15.58961 -15.35707 -15.29203 -14.90982 -14.63945 -14.51739 -14.09339 -14.03448 -13.76004 -13.66595 -13.62273 -13.37379 -13.20067 -12.75307 -12.64877 -12.36224 -12.24930 -12.08074 -11.95255 -11.76436 -11.62009 -11.37773 -11.27140 -10.82474 -10.56610 -10.35572 -10.25748 -10.01892 -9.75314 -9.61709 -9.50907 -9.35049 -9.31844 -9.30304 -8.85914 -8.55649 -6.97120 -5.94976 -3.30673 0.34271 0.80317 2.34362 2.74879 3.02265 3.25116 3.36392 3.49548 3.51512 3.70262 4.24053 4.35724 4.48353 4.54087 4.73073 4.74951 4.85712 4.96872 5.04637 5.09363 5.10935 5.22269 5.29979 5.31165 5.40834 5.45648 5.56790 5.76059 5.83896 5.87551 5.92663 5.94629 5.97025 5.98581 6.01109 6.09684 6.16140 6.31537 6.40925 6.49915 6.52921 6.56647 6.63685 6.71310 6.83147 6.98307 7.03791 7.67462 7.83021 7.96360 8.32419 8.34023 8.93983 9.72543 10.10304 11.20910 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.003125 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.399517 B = 8958.921627 C = 9850.854627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.559 3.441 4 O -0.529 6.529 5 C -0.148 4.148 6 C -0.067 4.067 7 C -0.132 4.132 8 C -0.059 4.059 9 C -0.134 4.134 10 C 0.557 3.443 11 O -0.528 6.528 12 N -0.708 5.708 13 C 0.184 3.816 14 C -0.160 4.160 15 C -0.145 4.145 16 C 0.132 3.868 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.085 0.915 20 C 0.025 3.975 21 N -0.908 5.908 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.273 1.273 26 C 0.149 3.851 27 C -0.139 4.139 28 C -0.001 4.001 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.401 0.599 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.397 0.603 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.066 0.934 46 H 0.016 0.984 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 -15.452 16.350 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.347 3.653 4 O -0.405 6.405 5 C -0.151 4.151 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.078 4.078 9 C -0.137 4.137 10 C 0.344 3.656 11 O -0.405 6.405 12 N -0.359 5.359 13 C 0.099 3.901 14 C -0.219 4.219 15 C -0.185 4.185 16 C 0.006 3.994 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.103 0.897 20 C -0.174 4.174 21 N -0.551 5.551 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.198 1.198 26 C 0.023 3.977 27 C -0.178 4.178 28 C -0.021 4.021 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.233 0.767 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.100 0.900 48 H 0.079 0.921 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.391 -13.861 16.157 25.696 hybrid contribution -0.437 -1.371 -0.491 1.520 sum -14.829 -15.231 15.666 26.406 Atomic orbital electron populations 1.21570 0.79031 1.02356 1.02674 1.45687 1.07984 1.08514 1.76446 1.18260 0.87134 0.83805 0.76131 1.90817 1.69795 1.31069 1.48840 1.19818 0.92806 0.94280 1.08173 1.21424 0.94732 0.96756 0.95687 1.21052 0.93821 0.98443 1.01647 1.21613 1.00468 0.91734 0.93974 1.20094 0.94073 0.93806 1.05774 1.18070 0.82376 0.88393 0.76764 1.90730 1.68779 1.31650 1.49386 1.46076 1.05563 1.10022 1.74282 1.20314 0.91154 0.83001 0.95632 1.22218 1.03626 0.99793 0.96221 1.22414 1.02206 0.99133 0.94708 1.21243 0.85653 0.95948 0.96536 1.44353 1.06298 1.65217 1.16953 1.18898 0.91776 1.43232 0.84923 0.89708 1.25257 0.97423 0.99068 0.95675 1.69837 1.39380 1.41952 1.03896 0.86963 0.84898 0.80372 0.76453 1.21616 1.23230 1.19789 1.20877 0.98565 0.92326 0.85963 1.22344 0.93560 1.02626 0.99290 1.21392 0.92488 0.98519 0.89701 0.90481 0.91984 0.91954 0.76417 0.85335 0.84522 0.84894 0.76747 0.93190 0.91863 0.90647 0.90495 0.90979 0.91181 0.96038 0.92779 0.91563 0.96609 0.90043 0.92101 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.73 -5.42 5.66 -68.04 -0.39 -5.80 16 3 C 0.56 6.49 7.77 -12.33 -0.10 6.40 16 4 O -0.53 -8.33 16.34 5.31 0.09 -8.25 16 5 C -0.15 -1.62 5.87 -105.02 -0.62 -2.23 16 6 C -0.07 -0.51 9.54 -39.10 -0.37 -0.88 16 7 C -0.13 -1.01 10.02 -39.70 -0.40 -1.41 16 8 C -0.06 -0.58 9.54 -39.10 -0.37 -0.96 16 9 C -0.13 -1.76 5.87 -105.02 -0.62 -2.37 16 10 C 0.56 8.70 7.19 -12.32 -0.09 8.61 16 11 O -0.53 -9.82 12.56 5.32 0.07 -9.75 16 12 N -0.71 -10.16 4.05 -48.49 -0.20 -10.35 16 13 C 0.18 2.88 0.66 -131.77 -0.09 2.79 16 14 C -0.16 -2.27 8.40 37.16 0.31 -1.96 16 15 C -0.14 -2.79 4.66 -26.63 -0.12 -2.91 16 16 C 0.13 2.97 3.95 -3.73 -0.01 2.96 16 17 N -0.60 -14.00 2.77 -172.34 -0.48 -14.48 16 18 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 19 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 20 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 21 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 22 Si 0.88 23.02 24.34 -169.99 -4.14 18.89 16 23 H -0.29 -7.50 6.62 56.52 0.37 -7.13 16 24 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 25 H -0.27 -6.94 6.64 56.52 0.38 -6.56 16 26 C 0.15 2.68 6.24 -3.71 -0.02 2.66 16 27 C -0.14 -2.07 4.96 -26.61 -0.13 -2.20 16 28 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.40 1.64 6.85 -40.82 -0.28 1.36 16 33 H 0.13 0.50 6.39 -52.49 -0.34 0.16 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 1.07 6.39 -52.49 -0.34 0.74 16 36 H 0.40 4.78 5.29 -40.82 -0.22 4.56 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.20 6.17 -51.93 -0.32 0.88 16 40 H 0.08 1.54 6.19 -51.93 -0.32 1.22 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 43 H 0.02 0.50 6.67 -51.93 -0.35 0.15 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.02 0.26 6.94 -51.93 -0.36 -0.10 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.15 2.31 7.23 -52.49 -0.38 1.93 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -36.39 379.94 -8.08 -44.48 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.96 Total: 4.16 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.58 Total: 2.59 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.28 Total: -57.84 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.15 Total: -18.00 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.14 Total: 18.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.39 -8.08 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045643187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.811 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds