Wall clock time and date at job start Wed Apr 1 2020 03:24:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34774 * 120.00207 * 2 1
4 4 O 1.21560 * 119.99750 * 359.97438 * 3 2 1
5 5 C 1.47856 * 120.00146 * 179.97438 * 3 2 1
6 6 C 1.39702 * 120.07194 * 0.02562 * 5 3 2
7 7 C 1.38060 * 120.14413 * 180.02562 * 6 5 3
8 8 C 1.38102 * 120.29458 * 359.68289 * 7 6 5
9 9 C 1.39665 * 120.14194 * 0.59265 * 8 7 6
10 10 C 1.47862 * 120.06969 * 179.69811 * 9 8 7
11 11 O 1.21550 * 120.00199 * 179.45900 * 10 9 8
12 12 N 1.34780 * 120.00254 * 359.72991 * 10 9 8
13 13 C 1.46495 * 120.00106 * 179.97438 * 12 10 9
14 14 C 1.53007 * 109.45910 * 60.00420 * 13 12 10
15 15 C 1.53043 * 109.46295 * 300.03052 * 13 12 10
16 16 C 1.53160 * 109.32652 * 301.35840 * 15 13 12
17 17 N 1.46929 * 108.77041 * 305.35546 * 16 15 13
18 18 C 1.36931 * 120.63021 * 233.63375 * 17 16 15
19 19 H 1.08006 * 120.00114 * 152.59891 * 18 17 16
20 20 C 1.38810 * 120.00028 * 332.59902 * 18 17 16
21 21 N 1.31619 * 119.99926 * 159.36915 * 20 18 17
22 22 Si 1.86799 * 119.99877 * 339.36015 * 20 18 17
23 23 H 1.48497 * 109.47038 * 92.90671 * 22 20 18
24 24 H 1.48501 * 109.47104 * 212.90138 * 22 20 18
25 25 H 1.48498 * 109.47222 * 332.90460 * 22 20 18
26 26 C 1.46931 * 118.73654 * 53.60404 * 17 16 15
27 27 C 1.53045 * 109.46123 * 179.97438 * 13 12 10
28 28 C 1.39297 * 120.07371 * 179.97438 * 5 3 2
29 29 H 1.09001 * 109.47380 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47393 * 300.00703 * 1 2 3
31 31 H 1.09008 * 109.47103 * 60.00198 * 1 2 3
32 32 H 0.97003 * 119.99760 * 179.97438 * 2 1 3
33 33 H 1.07996 * 119.93179 * 359.97438 * 6 5 3
34 34 H 1.08002 * 119.85106 * 179.97438 * 7 6 5
35 35 H 1.08002 * 119.92828 * 180.32447 * 8 7 6
36 36 H 0.97000 * 119.99848 * 0.02562 * 12 10 9
37 37 H 1.08999 * 109.47080 * 59.99948 * 14 13 12
38 38 H 1.09000 * 109.46916 * 179.97438 * 14 13 12
39 39 H 1.08996 * 109.46859 * 299.99626 * 14 13 12
40 40 H 1.08996 * 109.49555 * 61.29635 * 15 13 12
41 41 H 1.08991 * 109.49640 * 181.39159 * 15 13 12
42 42 H 1.08997 * 109.58999 * 185.56702 * 16 15 13
43 43 H 1.09000 * 109.71053 * 65.20997 * 16 15 13
44 44 H 0.97007 * 119.99913 * 179.97438 * 21 20 18
45 45 H 1.09004 * 109.58440 * 186.60318 * 26 17 16
46 46 H 1.08998 * 109.69867 * 66.25559 * 26 17 16
47 47 H 1.08991 * 109.49820 * 178.60518 * 27 13 12
48 48 H 1.08992 * 109.49543 * 298.67546 * 27 13 12
49 49 H 1.07999 * 120.14419 * 0.03920 * 28 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5311 2.2199 -0.0005
5 6 3.6175 1.1671 0.0006
6 6 4.3175 -0.0419 0.0006
7 6 5.6981 -0.0436 0.0016
8 6 6.3963 1.1479 -0.0039
9 6 5.7088 2.3636 0.0019
10 6 6.4579 3.6384 0.0027
11 8 5.8584 4.6958 -0.0022
12 7 7.8057 3.6281 0.0034
13 6 8.5479 4.8911 0.0036
14 6 8.1837 5.6961 1.2528
15 6 8.1842 5.6965 -1.2459
16 6 8.5180 4.8740 -2.4941
17 7 9.9281 4.4663 -2.4285
18 6 10.7812 4.7358 -3.4651
19 1 11.8382 4.8549 -3.2777
20 6 10.2876 4.8559 -4.7569
21 7 10.9854 5.4957 -5.6712
22 14 8.6330 4.1093 -5.1976
23 1 7.5682 5.1303 -5.0278
24 1 8.6575 3.6499 -6.6096
25 1 8.3578 2.9541 -4.3060
26 6 10.4055 3.7645 -1.2291
27 6 10.0503 4.5996 0.0050
28 6 4.3155 2.3726 0.0000
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3634 0.5138 -0.8901
32 1 1.9500 -0.8401 0.0004
33 1 3.7776 -0.9772 0.0006
34 1 6.2345 -0.9810 0.0021
35 1 7.4762 1.1396 -0.0083
36 1 8.2842 2.7844 0.0029
37 1 8.4422 5.1225 2.1428
38 1 8.7362 6.6357 1.2534
39 1 7.1136 5.9034 1.2522
40 1 7.1183 5.9238 -1.2347
41 1 8.7546 6.6252 -1.2589
42 1 8.3538 5.4794 -3.3854
43 1 7.8831 3.9888 -2.5316
44 1 10.6406 5.5793 -6.5741
45 1 11.4866 3.6379 -1.2859
46 1 9.9264 2.7879 -1.1597
47 1 10.6031 5.5387 -0.0198
48 1 10.3127 4.0467 0.9068
49 1 3.7791 3.3099 -0.0002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001045643187.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:24:33
Heat of formation + Delta-G solvation = -12.665995 kcal
Electronic energy + Delta-G solvation = -30991.183985 eV
Core-core repulsion = 26919.099444 eV
Total energy + Delta-G solvation = -4072.084540 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-40.82326 -40.09551 -38.56044 -37.33149 -35.06093 -34.64486 -32.73173 -31.63514
-31.38978 -30.58048 -30.45497 -27.72298 -27.32130 -24.53933 -23.94904 -23.37557
-22.82877 -21.60945 -21.13879 -20.31921 -18.93423 -18.87400 -17.06347 -16.79269
-16.46190 -16.28408 -15.58961 -15.35707 -15.29203 -14.90982 -14.63945 -14.51739
-14.09339 -14.03448 -13.76004 -13.66595 -13.62273 -13.37379 -13.20067 -12.75307
-12.64877 -12.36224 -12.24930 -12.08074 -11.95255 -11.76436 -11.62009 -11.37773
-11.27140 -10.82474 -10.56610 -10.35572 -10.25748 -10.01892 -9.75314 -9.61709
-9.50907 -9.35049 -9.31844 -9.30304 -8.85914 -8.55649 -6.97120 -5.94976
-3.30673 0.34271 0.80317 2.34362 2.74879 3.02265 3.25116 3.36392
3.49548 3.51512 3.70262 4.24053 4.35724 4.48353 4.54087 4.73073
4.74951 4.85712 4.96872 5.04637 5.09363 5.10935 5.22269 5.29979
5.31165 5.40834 5.45648 5.56790 5.76059 5.83896 5.87551 5.92663
5.94629 5.97025 5.98581 6.01109 6.09684 6.16140 6.31537 6.40925
6.49915 6.52921 6.56647 6.63685 6.71310 6.83147 6.98307 7.03791
7.67462 7.83021 7.96360 8.32419 8.34023 8.93983 9.72543 10.10304
11.20910
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013036 B = 0.003125 C = 0.002842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2147.399517 B = 8958.921627 C = 9850.854627
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.734 5.734
3 C 0.559 3.441
4 O -0.529 6.529
5 C -0.148 4.148
6 C -0.067 4.067
7 C -0.132 4.132
8 C -0.059 4.059
9 C -0.134 4.134
10 C 0.557 3.443
11 O -0.528 6.528
12 N -0.708 5.708
13 C 0.184 3.816
14 C -0.160 4.160
15 C -0.145 4.145
16 C 0.132 3.868
17 N -0.604 5.604
18 C -0.260 4.260
19 H 0.085 0.915
20 C 0.025 3.975
21 N -0.908 5.908
22 Si 0.882 3.118
23 H -0.288 1.288
24 H -0.304 1.304
25 H -0.273 1.273
26 C 0.149 3.851
27 C -0.139 4.139
28 C -0.001 4.001
29 H 0.076 0.924
30 H 0.061 0.939
31 H 0.062 0.938
32 H 0.401 0.599
33 H 0.129 0.871
34 H 0.137 0.863
35 H 0.133 0.867
36 H 0.397 0.603
37 H 0.049 0.951
38 H 0.062 0.938
39 H 0.075 0.925
40 H 0.077 0.923
41 H 0.072 0.928
42 H 0.070 0.930
43 H 0.022 0.978
44 H 0.262 0.738
45 H 0.066 0.934
46 H 0.016 0.984
47 H 0.081 0.919
48 H 0.060 0.940
49 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.560 -15.452 16.350 26.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.386 5.386
3 C 0.347 3.653
4 O -0.405 6.405
5 C -0.151 4.151
6 C -0.086 4.086
7 C -0.150 4.150
8 C -0.078 4.078
9 C -0.137 4.137
10 C 0.344 3.656
11 O -0.405 6.405
12 N -0.359 5.359
13 C 0.099 3.901
14 C -0.219 4.219
15 C -0.185 4.185
16 C 0.006 3.994
17 N -0.328 5.328
18 C -0.388 4.388
19 H 0.103 0.897
20 C -0.174 4.174
21 N -0.551 5.551
22 Si 0.713 3.287
23 H -0.216 1.216
24 H -0.232 1.232
25 H -0.198 1.198
26 C 0.023 3.977
27 C -0.178 4.178
28 C -0.021 4.021
29 H 0.095 0.905
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.236 0.764
33 H 0.147 0.853
34 H 0.155 0.845
35 H 0.151 0.849
36 H 0.233 0.767
37 H 0.068 0.932
38 H 0.081 0.919
39 H 0.094 0.906
40 H 0.095 0.905
41 H 0.090 0.910
42 H 0.088 0.912
43 H 0.040 0.960
44 H 0.072 0.928
45 H 0.084 0.916
46 H 0.034 0.966
47 H 0.100 0.900
48 H 0.079 0.921
49 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -14.391 -13.861 16.157 25.696
hybrid contribution -0.437 -1.371 -0.491 1.520
sum -14.829 -15.231 15.666 26.406
Atomic orbital electron populations
1.21570 0.79031 1.02356 1.02674 1.45687 1.07984 1.08514 1.76446
1.18260 0.87134 0.83805 0.76131 1.90817 1.69795 1.31069 1.48840
1.19818 0.92806 0.94280 1.08173 1.21424 0.94732 0.96756 0.95687
1.21052 0.93821 0.98443 1.01647 1.21613 1.00468 0.91734 0.93974
1.20094 0.94073 0.93806 1.05774 1.18070 0.82376 0.88393 0.76764
1.90730 1.68779 1.31650 1.49386 1.46076 1.05563 1.10022 1.74282
1.20314 0.91154 0.83001 0.95632 1.22218 1.03626 0.99793 0.96221
1.22414 1.02206 0.99133 0.94708 1.21243 0.85653 0.95948 0.96536
1.44353 1.06298 1.65217 1.16953 1.18898 0.91776 1.43232 0.84923
0.89708 1.25257 0.97423 0.99068 0.95675 1.69837 1.39380 1.41952
1.03896 0.86963 0.84898 0.80372 0.76453 1.21616 1.23230 1.19789
1.20877 0.98565 0.92326 0.85963 1.22344 0.93560 1.02626 0.99290
1.21392 0.92488 0.98519 0.89701 0.90481 0.91984 0.91954 0.76417
0.85335 0.84522 0.84894 0.76747 0.93190 0.91863 0.90647 0.90495
0.90979 0.91181 0.96038 0.92779 0.91563 0.96609 0.90043 0.92101
0.83185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.53 10.70 59.85 0.64 1.17 16
2 N -0.73 -5.42 5.66 -68.04 -0.39 -5.80 16
3 C 0.56 6.49 7.77 -12.33 -0.10 6.40 16
4 O -0.53 -8.33 16.34 5.31 0.09 -8.25 16
5 C -0.15 -1.62 5.87 -105.02 -0.62 -2.23 16
6 C -0.07 -0.51 9.54 -39.10 -0.37 -0.88 16
7 C -0.13 -1.01 10.02 -39.70 -0.40 -1.41 16
8 C -0.06 -0.58 9.54 -39.10 -0.37 -0.96 16
9 C -0.13 -1.76 5.87 -105.02 -0.62 -2.37 16
10 C 0.56 8.70 7.19 -12.32 -0.09 8.61 16
11 O -0.53 -9.82 12.56 5.32 0.07 -9.75 16
12 N -0.71 -10.16 4.05 -48.49 -0.20 -10.35 16
13 C 0.18 2.88 0.66 -131.77 -0.09 2.79 16
14 C -0.16 -2.27 8.40 37.16 0.31 -1.96 16
15 C -0.14 -2.79 4.66 -26.63 -0.12 -2.91 16
16 C 0.13 2.97 3.95 -3.73 -0.01 2.96 16
17 N -0.60 -14.00 2.77 -172.34 -0.48 -14.48 16
18 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16
19 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16
20 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16
21 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16
22 Si 0.88 23.02 24.34 -169.99 -4.14 18.89 16
23 H -0.29 -7.50 6.62 56.52 0.37 -7.13 16
24 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16
25 H -0.27 -6.94 6.64 56.52 0.38 -6.56 16
26 C 0.15 2.68 6.24 -3.71 -0.02 2.66 16
27 C -0.14 -2.07 4.96 -26.61 -0.13 -2.20 16
28 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16
29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16
32 H 0.40 1.64 6.85 -40.82 -0.28 1.36 16
33 H 0.13 0.50 6.39 -52.49 -0.34 0.16 16
34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16
35 H 0.13 1.07 6.39 -52.49 -0.34 0.74 16
36 H 0.40 4.78 5.29 -40.82 -0.22 4.56 16
37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
39 H 0.07 1.20 6.17 -51.93 -0.32 0.88 16
40 H 0.08 1.54 6.19 -51.93 -0.32 1.22 16
41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16
42 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16
43 H 0.02 0.50 6.67 -51.93 -0.35 0.15 16
44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
45 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16
46 H 0.02 0.26 6.94 -51.93 -0.36 -0.10 16
47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
49 H 0.15 2.31 7.23 -52.49 -0.38 1.93 16
LS Contribution 379.94 15.07 5.73 5.73
Total: -1.00 -36.39 379.94 -8.08 -44.48
By element:
Atomic # 1 Polarization: 11.12 SS G_CDS: -6.96 Total: 4.16 kcal
Atomic # 6 Polarization: 5.17 SS G_CDS: -2.58 Total: 2.59 kcal
Atomic # 7 Polarization: -57.56 SS G_CDS: -0.28 Total: -57.84 kcal
Atomic # 8 Polarization: -18.15 SS G_CDS: 0.15 Total: -18.00 kcal
Atomic # 14 Polarization: 23.02 SS G_CDS: -4.14 Total: 18.89 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -36.39 -8.08 -44.48 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001045643187.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.811 kcal
(2) G-P(sol) polarization free energy of solvation -36.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.666 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds