Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00207 * 2 1 4 4 O 1.21560 * 119.99750 * 359.97438 * 3 2 1 5 5 C 1.47856 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39702 * 120.07194 * 0.02562 * 5 3 2 7 7 C 1.38060 * 120.14413 * 180.02562 * 6 5 3 8 8 C 1.38102 * 120.29458 * 359.68289 * 7 6 5 9 9 C 1.39665 * 120.14194 * 0.59265 * 8 7 6 10 10 C 1.47862 * 120.06969 * 179.69811 * 9 8 7 11 11 O 1.21550 * 120.00199 * 179.45900 * 10 9 8 12 12 N 1.34780 * 120.00254 * 359.72991 * 10 9 8 13 13 C 1.46495 * 120.00106 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.45910 * 60.00420 * 13 12 10 15 15 C 1.53043 * 109.46295 * 300.03052 * 13 12 10 16 16 C 1.53160 * 109.32652 * 301.35840 * 15 13 12 17 17 N 1.46929 * 108.77041 * 305.35546 * 16 15 13 18 18 C 1.36931 * 120.63021 * 233.63375 * 17 16 15 19 19 H 1.08006 * 120.00114 * 152.59891 * 18 17 16 20 20 C 1.38810 * 120.00028 * 332.59902 * 18 17 16 21 21 N 1.31619 * 119.99926 * 159.36915 * 20 18 17 22 22 Si 1.86799 * 119.99877 * 339.36015 * 20 18 17 23 23 H 1.48497 * 109.47038 * 92.90671 * 22 20 18 24 24 H 1.48501 * 109.47104 * 212.90138 * 22 20 18 25 25 H 1.48498 * 109.47222 * 332.90460 * 22 20 18 26 26 C 1.46931 * 118.73654 * 53.60404 * 17 16 15 27 27 C 1.53045 * 109.46123 * 179.97438 * 13 12 10 28 28 C 1.39297 * 120.07371 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47393 * 300.00703 * 1 2 3 31 31 H 1.09008 * 109.47103 * 60.00198 * 1 2 3 32 32 H 0.97003 * 119.99760 * 179.97438 * 2 1 3 33 33 H 1.07996 * 119.93179 * 359.97438 * 6 5 3 34 34 H 1.08002 * 119.85106 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.92828 * 180.32447 * 8 7 6 36 36 H 0.97000 * 119.99848 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.47080 * 59.99948 * 14 13 12 38 38 H 1.09000 * 109.46916 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.46859 * 299.99626 * 14 13 12 40 40 H 1.08996 * 109.49555 * 61.29635 * 15 13 12 41 41 H 1.08991 * 109.49640 * 181.39159 * 15 13 12 42 42 H 1.08997 * 109.58999 * 185.56702 * 16 15 13 43 43 H 1.09000 * 109.71053 * 65.20997 * 16 15 13 44 44 H 0.97007 * 119.99913 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58440 * 186.60318 * 26 17 16 46 46 H 1.08998 * 109.69867 * 66.25559 * 26 17 16 47 47 H 1.08991 * 109.49820 * 178.60518 * 27 13 12 48 48 H 1.08992 * 109.49543 * 298.67546 * 27 13 12 49 49 H 1.07999 * 120.14419 * 0.03920 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0419 0.0006 7 6 5.6981 -0.0436 0.0016 8 6 6.3963 1.1479 -0.0039 9 6 5.7088 2.3636 0.0019 10 6 6.4579 3.6384 0.0027 11 8 5.8584 4.6958 -0.0022 12 7 7.8057 3.6281 0.0034 13 6 8.5479 4.8911 0.0036 14 6 8.1837 5.6961 1.2528 15 6 8.1842 5.6965 -1.2459 16 6 8.5180 4.8740 -2.4941 17 7 9.9281 4.4663 -2.4285 18 6 10.7812 4.7358 -3.4651 19 1 11.8382 4.8549 -3.2777 20 6 10.2876 4.8559 -4.7569 21 7 10.9854 5.4957 -5.6712 22 14 8.6330 4.1093 -5.1976 23 1 7.5682 5.1303 -5.0278 24 1 8.6575 3.6499 -6.6096 25 1 8.3578 2.9541 -4.3060 26 6 10.4055 3.7645 -1.2291 27 6 10.0503 4.5996 0.0050 28 6 4.3155 2.3726 0.0000 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.9500 -0.8401 0.0004 33 1 3.7776 -0.9772 0.0006 34 1 6.2345 -0.9810 0.0021 35 1 7.4762 1.1396 -0.0083 36 1 8.2842 2.7844 0.0029 37 1 8.4422 5.1225 2.1428 38 1 8.7362 6.6357 1.2534 39 1 7.1136 5.9034 1.2522 40 1 7.1183 5.9238 -1.2347 41 1 8.7546 6.6252 -1.2589 42 1 8.3538 5.4794 -3.3854 43 1 7.8831 3.9888 -2.5316 44 1 10.6406 5.5793 -6.5741 45 1 11.4866 3.6379 -1.2859 46 1 9.9264 2.7879 -1.1597 47 1 10.6031 5.5387 -0.0198 48 1 10.3127 4.0467 0.9068 49 1 3.7791 3.3099 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045643187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = -40.045476 kcal Electronic energy + Delta-G solvation = -30992.371248 eV Core-core repulsion = 26919.099444 eV Total energy + Delta-G solvation = -4073.271804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.87990 -41.10709 -39.60671 -38.58521 -36.28009 -35.83993 -34.07653 -33.31532 -32.18948 -32.01468 -31.68004 -29.30725 -27.96101 -25.81665 -25.29904 -24.44695 -24.27433 -22.83064 -22.29638 -21.34933 -20.32108 -19.78535 -18.83755 -17.84285 -17.33114 -17.19534 -17.07751 -16.57643 -16.39797 -16.15592 -15.87096 -15.62737 -15.42527 -15.25670 -15.17365 -14.81590 -14.70857 -14.63149 -14.27520 -14.14438 -13.72984 -13.61376 -13.42008 -13.24699 -13.14042 -12.90311 -12.88404 -12.70379 -12.59848 -12.46463 -12.19317 -12.04752 -11.65961 -11.52298 -11.35261 -11.25206 -10.78089 -10.65012 -10.40604 -10.20879 -10.04348 -9.95672 -8.92929 -8.19224 -5.48627 -0.42893 -0.04644 1.26667 1.33237 1.41540 1.50386 1.97563 2.03442 2.22544 2.37917 2.82460 3.02200 3.34332 3.52443 3.56986 3.78427 3.79696 3.90081 3.99969 4.04305 4.06861 4.30286 4.31127 4.39539 4.41635 4.57283 4.58508 4.63691 4.65025 4.78804 4.82086 4.85407 4.89697 4.92528 4.97591 5.09037 5.10792 5.13495 5.14577 5.20613 5.22477 5.29792 5.33787 5.39552 5.62129 5.70582 5.86370 6.12259 6.42123 6.57027 6.90383 7.09607 7.21447 7.61485 8.03438 9.00592 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.003125 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.399517 B = 8958.921627 C = 9850.854627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.552 3.448 4 O -0.586 6.586 5 C -0.159 4.159 6 C -0.046 4.046 7 C -0.119 4.119 8 C -0.056 4.056 9 C -0.157 4.157 10 C 0.552 3.448 11 O -0.570 6.570 12 N -0.699 5.699 13 C 0.187 3.813 14 C -0.152 4.152 15 C -0.139 4.139 16 C 0.136 3.864 17 N -0.615 5.615 18 C -0.238 4.238 19 H 0.063 0.937 20 C -0.032 4.032 21 N -0.955 5.955 22 Si 0.937 3.063 23 H -0.297 1.297 24 H -0.309 1.309 25 H -0.258 1.258 26 C 0.140 3.860 27 C -0.126 4.126 28 C -0.028 4.028 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.421 0.579 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.156 0.844 36 H 0.411 0.589 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -20.227 18.772 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.340 3.660 4 O -0.467 6.467 5 C -0.162 4.162 6 C -0.064 4.064 7 C -0.137 4.137 8 C -0.075 4.075 9 C -0.160 4.160 10 C 0.340 3.660 11 O -0.451 6.451 12 N -0.352 5.352 13 C 0.102 3.898 14 C -0.210 4.210 15 C -0.179 4.179 16 C 0.010 3.990 17 N -0.340 5.340 18 C -0.368 4.368 19 H 0.080 0.920 20 C -0.227 4.227 21 N -0.601 5.601 22 Si 0.767 3.233 23 H -0.225 1.225 24 H -0.238 1.238 25 H -0.182 1.182 26 C 0.016 3.984 27 C -0.165 4.165 28 C -0.048 4.048 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.259 0.741 33 H 0.193 0.807 34 H 0.199 0.801 35 H 0.173 0.827 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.274 -18.743 18.637 30.039 hybrid contribution -0.486 0.055 -1.160 1.259 sum -14.759 -18.688 17.476 29.538 Atomic orbital electron populations 1.21750 0.78098 1.04776 1.01526 1.45579 1.08635 1.08041 1.74228 1.18546 0.87648 0.84147 0.75684 1.90789 1.70839 1.33296 1.51800 1.19854 0.92526 0.94792 1.09055 1.21927 0.95177 0.96868 0.92439 1.21583 0.93778 0.99189 0.99103 1.21932 1.01667 0.91084 0.92789 1.19914 0.93596 0.93920 1.08573 1.18560 0.82683 0.88959 0.75756 1.90711 1.69627 1.33477 1.51258 1.45937 1.05211 1.10123 1.73882 1.20214 0.91966 0.83404 0.94230 1.22117 1.02259 1.00316 0.96317 1.22297 1.01167 0.99000 0.95410 1.21104 0.85489 0.95741 0.96619 1.44473 1.05841 1.66205 1.17487 1.18915 0.91432 1.40520 0.85891 0.91964 1.25789 1.00345 1.00427 0.96100 1.69947 1.41421 1.44484 1.04272 0.86072 0.81476 0.79763 0.75951 1.22549 1.23801 1.18186 1.21189 0.98941 0.93567 0.84693 1.22238 0.92295 1.02393 0.99550 1.21199 0.93092 0.98312 0.92229 0.86167 0.93012 0.93380 0.74094 0.80678 0.80074 0.82663 0.75086 0.90618 0.91198 0.92877 0.91905 0.91856 0.94711 0.95999 0.93116 0.91401 0.93723 0.90805 0.87493 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.70 127.77 1.37 2.22 16 2 N -0.71 -8.81 5.66 -487.45 -2.76 -11.58 16 3 C 0.55 12.67 7.77 86.79 0.67 13.34 16 4 O -0.59 -19.72 16.34 -3.90 -0.06 -19.78 16 5 C -0.16 -3.30 5.87 -20.12 -0.12 -3.42 16 6 C -0.05 -0.48 9.54 22.58 0.22 -0.27 16 7 C -0.12 -1.16 10.02 22.20 0.22 -0.93 16 8 C -0.06 -0.89 9.54 22.58 0.22 -0.67 16 9 C -0.16 -3.98 5.87 -20.12 -0.12 -4.09 16 10 C 0.55 17.15 7.19 86.79 0.62 17.78 16 11 O -0.57 -22.31 12.56 -3.87 -0.05 -22.36 16 12 N -0.70 -18.51 4.05 -425.60 -1.73 -20.24 16 13 C 0.19 5.52 0.66 3.64 0.00 5.52 16 14 C -0.15 -4.04 8.40 71.98 0.60 -3.44 16 15 C -0.14 -5.39 4.66 30.66 0.14 -5.25 16 16 C 0.14 6.14 3.95 86.35 0.34 6.48 16 17 N -0.62 -27.94 2.77 -699.16 -1.94 -29.87 16 18 C -0.24 -13.23 10.03 84.03 0.84 -12.39 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.03 -1.88 5.23 84.86 0.44 -1.44 16 21 N -0.95 -60.70 13.97 21.65 0.30 -60.40 16 22 Si 0.94 48.70 24.34 68.60 1.67 50.37 16 23 H -0.30 -15.69 6.62 99.48 0.66 -15.03 16 24 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 25 H -0.26 -12.55 6.64 99.48 0.66 -11.89 16 26 C 0.14 4.63 6.24 86.36 0.54 5.17 16 27 C -0.13 -3.30 4.96 30.67 0.15 -3.15 16 28 C -0.03 -0.79 9.14 22.79 0.21 -0.58 16 29 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.42 1.57 6.85 -92.71 -0.64 0.93 16 33 H 0.18 0.15 6.39 -2.91 -0.02 0.14 16 34 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 35 H 0.16 1.69 6.39 -2.91 -0.02 1.67 16 36 H 0.41 8.24 5.29 -92.71 -0.49 7.75 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16 40 H 0.06 2.63 6.19 -2.39 -0.01 2.61 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.03 1.81 4.50 -2.39 -0.01 1.80 16 43 H 0.02 1.00 6.67 -2.39 -0.02 0.98 16 44 H 0.26 15.85 8.31 -92.70 -0.77 15.07 16 45 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16 46 H 0.04 1.26 6.94 -2.39 -0.02 1.24 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.11 3.87 7.23 -2.91 -0.02 3.85 16 Total: -1.00 -87.73 379.94 1.58 -86.16 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.22 Total: 12.84 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.36 Total: 14.86 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -6.12 Total: -122.09 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.11 Total: -42.14 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.67 Total: 50.37 kcal Total: -87.73 1.58 -86.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045643187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.112 kcal (2) G-P(sol) polarization free energy of solvation -87.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds