Wall clock time and date at job start Wed Apr 1 2020 03:24:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34774 * 120.00207 * 2 1
4 4 O 1.21560 * 119.99750 * 359.97438 * 3 2 1
5 5 C 1.47856 * 120.00146 * 179.97438 * 3 2 1
6 6 C 1.39702 * 120.07194 * 0.02562 * 5 3 2
7 7 C 1.38060 * 120.14413 * 180.02562 * 6 5 3
8 8 C 1.38102 * 120.29458 * 359.68289 * 7 6 5
9 9 C 1.39665 * 120.14194 * 0.59265 * 8 7 6
10 10 C 1.47862 * 120.06969 * 179.69811 * 9 8 7
11 11 O 1.21550 * 120.00199 * 179.45900 * 10 9 8
12 12 N 1.34780 * 120.00254 * 359.72991 * 10 9 8
13 13 C 1.46495 * 120.00106 * 179.97438 * 12 10 9
14 14 C 1.53007 * 109.45910 * 60.00420 * 13 12 10
15 15 C 1.53043 * 109.46295 * 300.03052 * 13 12 10
16 16 C 1.53160 * 109.32652 * 301.35840 * 15 13 12
17 17 N 1.46929 * 108.77041 * 305.35546 * 16 15 13
18 18 C 1.36931 * 120.63021 * 233.63375 * 17 16 15
19 19 H 1.08006 * 120.00114 * 152.59891 * 18 17 16
20 20 C 1.38810 * 120.00028 * 332.59902 * 18 17 16
21 21 N 1.31619 * 119.99926 * 159.36915 * 20 18 17
22 22 Si 1.86799 * 119.99877 * 339.36015 * 20 18 17
23 23 H 1.48497 * 109.47038 * 92.90671 * 22 20 18
24 24 H 1.48501 * 109.47104 * 212.90138 * 22 20 18
25 25 H 1.48498 * 109.47222 * 332.90460 * 22 20 18
26 26 C 1.46931 * 118.73654 * 53.60404 * 17 16 15
27 27 C 1.53045 * 109.46123 * 179.97438 * 13 12 10
28 28 C 1.39297 * 120.07371 * 179.97438 * 5 3 2
29 29 H 1.09001 * 109.47380 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47393 * 300.00703 * 1 2 3
31 31 H 1.09008 * 109.47103 * 60.00198 * 1 2 3
32 32 H 0.97003 * 119.99760 * 179.97438 * 2 1 3
33 33 H 1.07996 * 119.93179 * 359.97438 * 6 5 3
34 34 H 1.08002 * 119.85106 * 179.97438 * 7 6 5
35 35 H 1.08002 * 119.92828 * 180.32447 * 8 7 6
36 36 H 0.97000 * 119.99848 * 0.02562 * 12 10 9
37 37 H 1.08999 * 109.47080 * 59.99948 * 14 13 12
38 38 H 1.09000 * 109.46916 * 179.97438 * 14 13 12
39 39 H 1.08996 * 109.46859 * 299.99626 * 14 13 12
40 40 H 1.08996 * 109.49555 * 61.29635 * 15 13 12
41 41 H 1.08991 * 109.49640 * 181.39159 * 15 13 12
42 42 H 1.08997 * 109.58999 * 185.56702 * 16 15 13
43 43 H 1.09000 * 109.71053 * 65.20997 * 16 15 13
44 44 H 0.97007 * 119.99913 * 179.97438 * 21 20 18
45 45 H 1.09004 * 109.58440 * 186.60318 * 26 17 16
46 46 H 1.08998 * 109.69867 * 66.25559 * 26 17 16
47 47 H 1.08991 * 109.49820 * 178.60518 * 27 13 12
48 48 H 1.08992 * 109.49543 * 298.67546 * 27 13 12
49 49 H 1.07999 * 120.14419 * 0.03920 * 28 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5311 2.2199 -0.0005
5 6 3.6175 1.1671 0.0006
6 6 4.3175 -0.0419 0.0006
7 6 5.6981 -0.0436 0.0016
8 6 6.3963 1.1479 -0.0039
9 6 5.7088 2.3636 0.0019
10 6 6.4579 3.6384 0.0027
11 8 5.8584 4.6958 -0.0022
12 7 7.8057 3.6281 0.0034
13 6 8.5479 4.8911 0.0036
14 6 8.1837 5.6961 1.2528
15 6 8.1842 5.6965 -1.2459
16 6 8.5180 4.8740 -2.4941
17 7 9.9281 4.4663 -2.4285
18 6 10.7812 4.7358 -3.4651
19 1 11.8382 4.8549 -3.2777
20 6 10.2876 4.8559 -4.7569
21 7 10.9854 5.4957 -5.6712
22 14 8.6330 4.1093 -5.1976
23 1 7.5682 5.1303 -5.0278
24 1 8.6575 3.6499 -6.6096
25 1 8.3578 2.9541 -4.3060
26 6 10.4055 3.7645 -1.2291
27 6 10.0503 4.5996 0.0050
28 6 4.3155 2.3726 0.0000
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3634 0.5138 -0.8901
32 1 1.9500 -0.8401 0.0004
33 1 3.7776 -0.9772 0.0006
34 1 6.2345 -0.9810 0.0021
35 1 7.4762 1.1396 -0.0083
36 1 8.2842 2.7844 0.0029
37 1 8.4422 5.1225 2.1428
38 1 8.7362 6.6357 1.2534
39 1 7.1136 5.9034 1.2522
40 1 7.1183 5.9238 -1.2347
41 1 8.7546 6.6252 -1.2589
42 1 8.3538 5.4794 -3.3854
43 1 7.8831 3.9888 -2.5316
44 1 10.6406 5.5793 -6.5741
45 1 11.4866 3.6379 -1.2859
46 1 9.9264 2.7879 -1.1597
47 1 10.6031 5.5387 -0.0198
48 1 10.3127 4.0467 0.9068
49 1 3.7791 3.3099 -0.0002
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001045643187.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:24:32
Heat of formation + Delta-G solvation = -40.045476 kcal
Electronic energy + Delta-G solvation = -30992.371248 eV
Core-core repulsion = 26919.099444 eV
Total energy + Delta-G solvation = -4073.271804 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-41.87990 -41.10709 -39.60671 -38.58521 -36.28009 -35.83993 -34.07653 -33.31532
-32.18948 -32.01468 -31.68004 -29.30725 -27.96101 -25.81665 -25.29904 -24.44695
-24.27433 -22.83064 -22.29638 -21.34933 -20.32108 -19.78535 -18.83755 -17.84285
-17.33114 -17.19534 -17.07751 -16.57643 -16.39797 -16.15592 -15.87096 -15.62737
-15.42527 -15.25670 -15.17365 -14.81590 -14.70857 -14.63149 -14.27520 -14.14438
-13.72984 -13.61376 -13.42008 -13.24699 -13.14042 -12.90311 -12.88404 -12.70379
-12.59848 -12.46463 -12.19317 -12.04752 -11.65961 -11.52298 -11.35261 -11.25206
-10.78089 -10.65012 -10.40604 -10.20879 -10.04348 -9.95672 -8.92929 -8.19224
-5.48627 -0.42893 -0.04644 1.26667 1.33237 1.41540 1.50386 1.97563
2.03442 2.22544 2.37917 2.82460 3.02200 3.34332 3.52443 3.56986
3.78427 3.79696 3.90081 3.99969 4.04305 4.06861 4.30286 4.31127
4.39539 4.41635 4.57283 4.58508 4.63691 4.65025 4.78804 4.82086
4.85407 4.89697 4.92528 4.97591 5.09037 5.10792 5.13495 5.14577
5.20613 5.22477 5.29792 5.33787 5.39552 5.62129 5.70582 5.86370
6.12259 6.42123 6.57027 6.90383 7.09607 7.21447 7.61485 8.03438
9.00592
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013036 B = 0.003125 C = 0.002842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2147.399517 B = 8958.921627 C = 9850.854627
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.712 5.712
3 C 0.552 3.448
4 O -0.586 6.586
5 C -0.159 4.159
6 C -0.046 4.046
7 C -0.119 4.119
8 C -0.056 4.056
9 C -0.157 4.157
10 C 0.552 3.448
11 O -0.570 6.570
12 N -0.699 5.699
13 C 0.187 3.813
14 C -0.152 4.152
15 C -0.139 4.139
16 C 0.136 3.864
17 N -0.615 5.615
18 C -0.238 4.238
19 H 0.063 0.937
20 C -0.032 4.032
21 N -0.955 5.955
22 Si 0.937 3.063
23 H -0.297 1.297
24 H -0.309 1.309
25 H -0.258 1.258
26 C 0.140 3.860
27 C -0.126 4.126
28 C -0.028 4.028
29 H 0.120 0.880
30 H 0.051 0.949
31 H 0.047 0.953
32 H 0.421 0.579
33 H 0.176 0.824
34 H 0.182 0.818
35 H 0.156 0.844
36 H 0.411 0.589
37 H 0.075 0.925
38 H 0.069 0.931
39 H 0.052 0.948
40 H 0.062 0.938
41 H 0.063 0.937
42 H 0.035 0.965
43 H 0.022 0.978
44 H 0.260 0.740
45 H 0.067 0.933
46 H 0.045 0.955
47 H 0.073 0.927
48 H 0.107 0.893
49 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.447 -20.227 18.772 30.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.365 5.365
3 C 0.340 3.660
4 O -0.467 6.467
5 C -0.162 4.162
6 C -0.064 4.064
7 C -0.137 4.137
8 C -0.075 4.075
9 C -0.160 4.160
10 C 0.340 3.660
11 O -0.451 6.451
12 N -0.352 5.352
13 C 0.102 3.898
14 C -0.210 4.210
15 C -0.179 4.179
16 C 0.010 3.990
17 N -0.340 5.340
18 C -0.368 4.368
19 H 0.080 0.920
20 C -0.227 4.227
21 N -0.601 5.601
22 Si 0.767 3.233
23 H -0.225 1.225
24 H -0.238 1.238
25 H -0.182 1.182
26 C 0.016 3.984
27 C -0.165 4.165
28 C -0.048 4.048
29 H 0.138 0.862
30 H 0.070 0.930
31 H 0.066 0.934
32 H 0.259 0.741
33 H 0.193 0.807
34 H 0.199 0.801
35 H 0.173 0.827
36 H 0.249 0.751
37 H 0.094 0.906
38 H 0.088 0.912
39 H 0.071 0.929
40 H 0.081 0.919
41 H 0.081 0.919
42 H 0.053 0.947
43 H 0.040 0.960
44 H 0.069 0.931
45 H 0.086 0.914
46 H 0.063 0.937
47 H 0.092 0.908
48 H 0.125 0.875
49 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -14.274 -18.743 18.637 30.039
hybrid contribution -0.486 0.055 -1.160 1.259
sum -14.759 -18.688 17.476 29.538
Atomic orbital electron populations
1.21750 0.78098 1.04776 1.01526 1.45579 1.08635 1.08041 1.74228
1.18546 0.87648 0.84147 0.75684 1.90789 1.70839 1.33296 1.51800
1.19854 0.92526 0.94792 1.09055 1.21927 0.95177 0.96868 0.92439
1.21583 0.93778 0.99189 0.99103 1.21932 1.01667 0.91084 0.92789
1.19914 0.93596 0.93920 1.08573 1.18560 0.82683 0.88959 0.75756
1.90711 1.69627 1.33477 1.51258 1.45937 1.05211 1.10123 1.73882
1.20214 0.91966 0.83404 0.94230 1.22117 1.02259 1.00316 0.96317
1.22297 1.01167 0.99000 0.95410 1.21104 0.85489 0.95741 0.96619
1.44473 1.05841 1.66205 1.17487 1.18915 0.91432 1.40520 0.85891
0.91964 1.25789 1.00345 1.00427 0.96100 1.69947 1.41421 1.44484
1.04272 0.86072 0.81476 0.79763 0.75951 1.22549 1.23801 1.18186
1.21189 0.98941 0.93567 0.84693 1.22238 0.92295 1.02393 0.99550
1.21199 0.93092 0.98312 0.92229 0.86167 0.93012 0.93380 0.74094
0.80678 0.80074 0.82663 0.75086 0.90618 0.91198 0.92877 0.91905
0.91856 0.94711 0.95999 0.93116 0.91401 0.93723 0.90805 0.87493
0.87158
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.85 10.70 127.77 1.37 2.22 16
2 N -0.71 -8.81 5.66 -487.45 -2.76 -11.58 16
3 C 0.55 12.67 7.77 86.79 0.67 13.34 16
4 O -0.59 -19.72 16.34 -3.90 -0.06 -19.78 16
5 C -0.16 -3.30 5.87 -20.12 -0.12 -3.42 16
6 C -0.05 -0.48 9.54 22.58 0.22 -0.27 16
7 C -0.12 -1.16 10.02 22.20 0.22 -0.93 16
8 C -0.06 -0.89 9.54 22.58 0.22 -0.67 16
9 C -0.16 -3.98 5.87 -20.12 -0.12 -4.09 16
10 C 0.55 17.15 7.19 86.79 0.62 17.78 16
11 O -0.57 -22.31 12.56 -3.87 -0.05 -22.36 16
12 N -0.70 -18.51 4.05 -425.60 -1.73 -20.24 16
13 C 0.19 5.52 0.66 3.64 0.00 5.52 16
14 C -0.15 -4.04 8.40 71.98 0.60 -3.44 16
15 C -0.14 -5.39 4.66 30.66 0.14 -5.25 16
16 C 0.14 6.14 3.95 86.35 0.34 6.48 16
17 N -0.62 -27.94 2.77 -699.16 -1.94 -29.87 16
18 C -0.24 -13.23 10.03 84.03 0.84 -12.39 16
19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16
20 C -0.03 -1.88 5.23 84.86 0.44 -1.44 16
21 N -0.95 -60.70 13.97 21.65 0.30 -60.40 16
22 Si 0.94 48.70 24.34 68.60 1.67 50.37 16
23 H -0.30 -15.69 6.62 99.48 0.66 -15.03 16
24 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16
25 H -0.26 -12.55 6.64 99.48 0.66 -11.89 16
26 C 0.14 4.63 6.24 86.36 0.54 5.17 16
27 C -0.13 -3.30 4.96 30.67 0.15 -3.15 16
28 C -0.03 -0.79 9.14 22.79 0.21 -0.58 16
29 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16
30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16
32 H 0.42 1.57 6.85 -92.71 -0.64 0.93 16
33 H 0.18 0.15 6.39 -2.91 -0.02 0.14 16
34 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16
35 H 0.16 1.69 6.39 -2.91 -0.02 1.67 16
36 H 0.41 8.24 5.29 -92.71 -0.49 7.75 16
37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
39 H 0.05 1.69 6.17 -2.39 -0.01 1.67 16
40 H 0.06 2.63 6.19 -2.39 -0.01 2.61 16
41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16
42 H 0.03 1.81 4.50 -2.39 -0.01 1.80 16
43 H 0.02 1.00 6.67 -2.39 -0.02 0.98 16
44 H 0.26 15.85 8.31 -92.70 -0.77 15.07 16
45 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16
46 H 0.04 1.26 6.94 -2.39 -0.02 1.24 16
47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16
49 H 0.11 3.87 7.23 -2.91 -0.02 3.85 16
Total: -1.00 -87.73 379.94 1.58 -86.16
By element:
Atomic # 1 Polarization: 13.07 SS G_CDS: -0.22 Total: 12.84 kcal
Atomic # 6 Polarization: 8.50 SS G_CDS: 6.36 Total: 14.86 kcal
Atomic # 7 Polarization: -115.97 SS G_CDS: -6.12 Total: -122.09 kcal
Atomic # 8 Polarization: -42.03 SS G_CDS: -0.11 Total: -42.14 kcal
Atomic # 14 Polarization: 48.70 SS G_CDS: 1.67 Total: 50.37 kcal
Total: -87.73 1.58 -86.16 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001045643187.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.112 kcal
(2) G-P(sol) polarization free energy of solvation -87.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds