Wall clock time and date at job start Wed Apr 1 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34862 * 119.10256 * 2 1 4 4 C 1.41665 * 119.34409 * 179.78195 * 3 2 1 5 5 O 1.22093 * 121.07410 * 180.23704 * 4 3 2 6 6 C 1.47106 * 117.85832 * 0.48479 * 4 3 2 7 7 C 1.47292 * 120.87969 * 179.77426 * 6 4 3 8 8 O 1.21620 * 120.00190 * 304.56945 * 7 6 4 9 9 N 1.34910 * 119.99535 * 124.56516 * 7 6 4 10 10 C 1.45198 * 119.84076 * 354.29224 * 9 7 6 11 11 C 1.51988 * 112.24821 * 262.57111 * 10 9 7 12 12 C 1.51270 * 113.52950 * 286.86876 * 11 10 9 13 13 H 1.09400 * 111.11143 * 185.73220 * 12 11 10 14 14 C 1.54235 * 108.38948 * 308.35498 * 12 11 10 15 15 C 1.54097 * 104.55875 * 89.40234 * 14 12 11 16 16 C 1.51937 * 105.36870 * 12.82451 * 15 14 12 17 17 H 1.09890 * 107.66645 * 121.96845 * 16 15 14 18 18 C 1.49405 * 119.98601 * 174.14871 * 9 7 6 19 19 N 1.47870 * 109.52992 * 5.42534 * 16 15 14 20 20 C 1.36953 * 127.34789 * 157.63906 * 19 16 15 21 21 H 1.08005 * 120.00268 * 180.02562 * 20 19 16 22 22 C 1.38813 * 120.00231 * 0.02562 * 20 19 16 23 23 N 1.31616 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00271 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47014 * 59.99788 * 24 22 20 26 26 H 1.48496 * 109.47077 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46984 * 300.00142 * 24 22 20 28 28 C 1.37980 * 118.23650 * 359.50192 * 6 4 3 29 29 N 1.34351 * 120.37536 * 0.27544 * 28 6 4 30 30 C 1.46491 * 118.80948 * 179.97438 * 29 28 6 31 31 H 1.09008 * 109.46783 * 264.73402 * 1 2 3 32 32 H 1.08996 * 109.47557 * 24.72972 * 1 2 3 33 33 H 1.08993 * 109.47268 * 144.73692 * 1 2 3 34 34 H 1.08005 * 120.32870 * 0.03379 * 3 2 1 35 35 H 1.09509 * 107.90814 * 21.42706 * 10 9 7 36 36 H 1.08133 * 110.17518 * 139.53742 * 10 9 7 37 37 H 1.08926 * 108.71742 * 48.40323 * 11 10 9 38 38 H 1.09164 * 108.28625 * 166.07414 * 11 10 9 39 39 H 1.09374 * 110.48271 * 208.18459 * 14 12 11 40 40 H 1.09158 * 110.78577 * 330.06486 * 14 12 11 41 41 H 1.08815 * 111.12539 * 252.42996 * 15 14 12 42 42 H 1.09495 * 109.92581 * 131.29146 * 15 14 12 43 43 H 1.09444 * 109.02483 * 27.86250 * 18 9 7 44 44 H 1.09455 * 108.97520 * 269.92517 * 18 9 7 45 45 H 0.96999 * 120.00281 * 180.02562 * 23 22 20 46 46 H 1.08002 * 119.81536 * 180.24765 * 28 6 4 47 47 H 1.09000 * 109.47627 * 95.25271 * 30 29 28 48 48 H 1.08997 * 109.47054 * 215.25670 * 30 29 28 49 49 H 1.08999 * 109.47177 * 335.25525 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0047 5 8 4.2053 2.2327 0.0092 6 6 4.2724 -0.1133 -0.0016 7 6 5.7436 -0.1847 -0.0022 8 8 6.3799 0.3869 -0.8669 9 7 6.3853 -0.8841 0.9565 10 6 5.6328 -1.4608 2.0562 11 6 5.6658 -0.5850 3.2979 12 6 6.9990 -0.6002 4.0124 13 1 6.9495 -0.0404 4.9510 14 6 7.4039 -2.0685 4.2558 15 6 8.1967 -2.4657 2.9955 16 6 8.4825 -1.1607 2.2716 17 1 9.5726 -1.0693 2.1668 18 6 7.8664 -1.0661 0.8831 19 7 8.0198 -0.0253 3.0982 20 6 8.4443 1.2753 3.0357 21 1 8.0226 2.0136 3.7016 22 6 9.4166 1.6446 2.1164 23 7 9.9302 0.7449 1.3045 24 14 9.9962 3.4184 2.0315 25 1 10.5725 3.8140 3.3417 26 1 11.0318 3.5507 0.9755 27 1 8.8454 4.3003 1.7104 28 6 3.5076 -1.2617 -0.0011 29 7 2.1663 -1.1847 -0.0006 30 6 1.3880 -2.4257 -0.0007 31 1 -0.3633 -0.0943 1.0234 32 1 -0.3634 0.9334 -0.4299 33 1 -0.3633 -0.8390 -0.5933 34 1 1.6136 2.1083 0.0005 35 1 4.5895 -1.5556 1.7371 36 1 6.0087 -2.4477 2.2883 37 1 5.4287 0.4385 3.0102 38 1 4.8958 -0.9379 3.9866 39 1 8.0359 -2.1489 5.1448 40 1 6.5209 -2.6996 4.3719 41 1 7.6215 -3.1434 2.3678 42 1 9.1368 -2.9480 3.2826 43 1 8.3036 -0.2201 0.3437 44 1 8.0853 -1.9800 0.3219 45 1 10.6099 1.0028 0.6623 46 1 3.9899 -2.2281 -0.0016 47 1 1.1155 -2.6839 1.0226 48 1 0.4838 -2.2875 -0.5936 49 1 1.9854 -3.2293 -0.4313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045797291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:08 Heat of formation + Delta-G solvation = 24.071336 kcal Electronic energy + Delta-G solvation = -32840.262872 eV Core-core repulsion = 28769.771382 eV Total energy + Delta-G solvation = -4070.491490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.22062 -39.51334 -38.02858 -37.23678 -34.27434 -33.37370 -32.80206 -32.46610 -31.41495 -29.29504 -28.51754 -27.09308 -26.82717 -25.63555 -24.24696 -23.57032 -22.20268 -21.50405 -19.89103 -19.12962 -18.67888 -17.70884 -16.94142 -16.82304 -16.38511 -16.11377 -15.45443 -15.17404 -14.68291 -14.49157 -14.25921 -14.11453 -13.79103 -13.69875 -13.60634 -13.31792 -13.26184 -12.98693 -12.72612 -12.46366 -12.33262 -12.16551 -12.03262 -11.86749 -11.67164 -11.45752 -11.18271 -11.11644 -10.79171 -10.63854 -10.61624 -10.08505 -9.80513 -9.59302 -9.48821 -9.40724 -9.35243 -9.23060 -8.80068 -8.48215 -7.82961 -7.53295 -6.72434 -5.54377 -2.91503 1.10450 1.35617 2.30161 3.40420 3.55706 3.62297 3.66206 3.75767 4.00734 4.10739 4.30385 4.48786 4.59655 4.64033 4.69629 4.89335 4.97674 5.05290 5.21018 5.32735 5.33496 5.38093 5.47045 5.55776 5.58774 5.73131 5.74305 5.79128 5.85559 5.93576 5.97098 6.18104 6.26931 6.30058 6.44074 6.53170 6.56481 6.58822 6.67854 6.78592 6.80226 6.88761 7.07022 7.16408 7.41865 7.67090 7.77956 8.01046 8.38417 8.40111 8.41825 9.11628 9.34038 9.93664 10.62754 11.52839 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.004464 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.537942 B = 6270.918722 C = 7343.464637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.274 4.274 4 C 0.406 3.594 5 O -0.487 6.487 6 C -0.267 4.267 7 C 0.574 3.426 8 O -0.524 6.524 9 N -0.587 5.587 10 C 0.114 3.886 11 C -0.147 4.147 12 C 0.152 3.848 13 H 0.058 0.942 14 C -0.125 4.125 15 C -0.128 4.128 16 C 0.155 3.845 17 H 0.107 0.893 18 C 0.121 3.879 19 N -0.579 5.579 20 C -0.211 4.211 21 H 0.076 0.924 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.148 3.852 29 N -0.475 5.475 30 C 0.052 3.948 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.124 0.876 44 H 0.024 0.976 45 H 0.253 0.747 46 H 0.167 0.833 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.314 -14.094 0.438 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.299 4.299 4 C 0.292 3.708 5 O -0.368 6.368 6 C -0.278 4.278 7 C 0.360 3.640 8 O -0.400 6.400 9 N -0.320 5.320 10 C -0.010 4.010 11 C -0.188 4.188 12 C 0.045 3.955 13 H 0.076 0.924 14 C -0.164 4.164 15 C -0.166 4.166 16 C 0.048 3.952 17 H 0.125 0.875 18 C -0.001 4.001 19 N -0.302 5.302 20 C -0.339 4.339 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.021 3.979 29 N -0.164 5.164 30 C -0.089 4.089 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.184 0.816 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.521 -13.205 -0.142 24.403 hybrid contribution 0.042 0.771 -0.006 0.773 sum -20.479 -12.434 -0.148 23.959 Atomic orbital electron populations 1.21154 0.88360 1.04756 1.03909 1.20173 0.94576 0.85102 0.95316 1.22194 0.96270 0.97072 1.14317 1.18213 0.88300 0.87910 0.76373 1.90841 1.70051 1.33413 1.42530 1.22727 0.95556 0.94956 1.14581 1.17463 0.85235 0.78737 0.82545 1.90771 1.67215 1.43444 1.38554 1.48276 1.09240 1.52428 1.22052 1.21046 0.94870 0.97024 0.88056 1.22084 0.99188 1.00767 0.96720 1.21046 0.88952 0.92148 0.93389 0.92402 1.22515 0.98884 0.97152 0.97851 1.22198 0.99143 0.98514 0.96778 1.20904 1.01748 0.84463 0.88090 0.87546 1.23206 0.75477 1.01763 0.99640 1.44901 1.42633 1.04716 1.37958 1.18889 1.16178 0.83115 1.15677 0.90662 1.24619 0.99530 0.97760 0.98052 1.69667 1.31294 1.31670 1.24165 0.86177 0.78186 0.84588 0.76773 1.21511 1.21586 1.21131 1.21958 0.81702 0.99744 0.94529 1.42424 1.05194 1.06804 1.61962 1.22456 0.97632 0.84676 1.04151 0.89487 0.89072 0.90334 0.83338 0.92908 0.90988 0.92113 0.93463 0.92481 0.92435 0.92593 0.92608 0.85845 0.95746 0.93663 0.81641 0.90193 0.89116 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 9.36 36.00 0.34 -0.23 16 2 C 0.15 1.46 6.64 -82.13 -0.55 0.91 16 3 C -0.27 -3.83 9.57 -39.47 -0.38 -4.21 16 4 C 0.41 8.21 6.97 -34.68 -0.24 7.96 16 5 O -0.49 -12.68 17.48 4.83 0.08 -12.60 16 6 C -0.27 -4.98 5.02 -102.71 -0.52 -5.50 16 7 C 0.57 13.46 6.93 -12.52 -0.09 13.38 16 8 O -0.52 -15.02 16.57 5.26 0.09 -14.93 16 9 N -0.59 -12.64 2.87 -174.45 -0.50 -13.14 16 10 C 0.11 1.93 4.92 -5.26 -0.03 1.90 16 11 C -0.15 -2.71 5.08 -28.12 -0.14 -2.85 16 12 C 0.15 3.08 3.93 -67.00 -0.26 2.82 16 13 H 0.06 1.18 8.18 -51.70 -0.42 0.75 16 14 C -0.13 -2.07 5.96 -25.51 -0.15 -2.22 16 15 C -0.13 -2.29 5.69 -26.70 -0.15 -2.44 16 16 C 0.15 3.60 2.18 -68.13 -0.15 3.45 16 17 H 0.11 2.86 6.24 -51.42 -0.32 2.54 16 18 C 0.12 2.89 5.51 -2.84 -0.02 2.87 16 19 N -0.58 -14.63 2.57 -156.31 -0.40 -15.04 16 20 C -0.21 -6.09 10.38 -15.05 -0.16 -6.24 16 21 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 22 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 23 N -0.92 -27.28 8.21 55.49 0.46 -26.82 16 24 Si 0.91 24.25 29.55 -169.99 -5.02 19.23 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 27 H -0.28 -7.87 7.11 56.52 0.40 -7.47 16 28 C 0.15 1.78 7.73 -16.54 -0.13 1.66 16 29 N -0.48 -4.08 2.97 -119.76 -0.36 -4.44 16 30 C 0.05 0.17 9.99 59.84 0.60 0.77 16 31 H 0.09 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.09 0.38 7.98 -51.93 -0.41 -0.04 16 33 H 0.08 0.18 5.96 -51.93 -0.31 -0.13 16 34 H 0.15 1.84 8.01 -52.48 -0.42 1.42 16 35 H 0.05 0.74 4.26 -51.64 -0.22 0.52 16 36 H 0.07 1.08 4.66 -52.41 -0.24 0.83 16 37 H 0.06 1.37 8.14 -51.97 -0.42 0.94 16 38 H 0.05 0.71 8.16 -51.84 -0.42 0.28 16 39 H 0.06 0.92 8.17 -51.72 -0.42 0.50 16 40 H 0.06 0.78 7.52 -51.84 -0.39 0.39 16 41 H 0.06 0.88 6.36 -52.03 -0.33 0.55 16 42 H 0.06 0.95 8.18 -51.65 -0.42 0.53 16 43 H 0.12 3.63 5.27 -51.68 -0.27 3.36 16 44 H 0.02 0.53 8.18 -51.67 -0.42 0.11 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.17 1.53 7.50 -52.49 -0.39 1.13 16 47 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 48 H 0.09 0.12 5.89 -51.93 -0.31 -0.19 16 49 H 0.09 0.18 7.87 -51.93 -0.41 -0.23 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -41.23 371.84 -9.12 -50.35 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.96 Total: -0.03 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -2.11 Total: 11.81 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.80 Total: -59.43 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: 0.17 Total: -27.53 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.02 Total: 19.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -41.23 -9.12 -50.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045797291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.420 kcal (2) G-P(sol) polarization free energy of solvation -41.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds