Wall clock time and date at job start Wed Apr 1 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34862 * 119.10256 * 2 1 4 4 C 1.41665 * 119.34409 * 179.78195 * 3 2 1 5 5 O 1.22093 * 121.07410 * 180.23704 * 4 3 2 6 6 C 1.47106 * 117.85832 * 0.48479 * 4 3 2 7 7 C 1.47292 * 120.87969 * 179.77426 * 6 4 3 8 8 O 1.21620 * 120.00190 * 304.56945 * 7 6 4 9 9 N 1.34910 * 119.99535 * 124.56516 * 7 6 4 10 10 C 1.45198 * 119.84076 * 354.29224 * 9 7 6 11 11 C 1.51988 * 112.24821 * 262.57111 * 10 9 7 12 12 C 1.51270 * 113.52950 * 286.86876 * 11 10 9 13 13 H 1.09400 * 111.11143 * 185.73220 * 12 11 10 14 14 C 1.54235 * 108.38948 * 308.35498 * 12 11 10 15 15 C 1.54097 * 104.55875 * 89.40234 * 14 12 11 16 16 C 1.51937 * 105.36870 * 12.82451 * 15 14 12 17 17 H 1.09890 * 107.66645 * 121.96845 * 16 15 14 18 18 C 1.49405 * 119.98601 * 174.14871 * 9 7 6 19 19 N 1.47870 * 109.52992 * 5.42534 * 16 15 14 20 20 C 1.36953 * 127.34789 * 157.63906 * 19 16 15 21 21 H 1.08005 * 120.00268 * 180.02562 * 20 19 16 22 22 C 1.38813 * 120.00231 * 0.02562 * 20 19 16 23 23 N 1.31616 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00271 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47014 * 59.99788 * 24 22 20 26 26 H 1.48496 * 109.47077 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46984 * 300.00142 * 24 22 20 28 28 C 1.37980 * 118.23650 * 359.50192 * 6 4 3 29 29 N 1.34351 * 120.37536 * 0.27544 * 28 6 4 30 30 C 1.46491 * 118.80948 * 179.97438 * 29 28 6 31 31 H 1.09008 * 109.46783 * 264.73402 * 1 2 3 32 32 H 1.08996 * 109.47557 * 24.72972 * 1 2 3 33 33 H 1.08993 * 109.47268 * 144.73692 * 1 2 3 34 34 H 1.08005 * 120.32870 * 0.03379 * 3 2 1 35 35 H 1.09509 * 107.90814 * 21.42706 * 10 9 7 36 36 H 1.08133 * 110.17518 * 139.53742 * 10 9 7 37 37 H 1.08926 * 108.71742 * 48.40323 * 11 10 9 38 38 H 1.09164 * 108.28625 * 166.07414 * 11 10 9 39 39 H 1.09374 * 110.48271 * 208.18459 * 14 12 11 40 40 H 1.09158 * 110.78577 * 330.06486 * 14 12 11 41 41 H 1.08815 * 111.12539 * 252.42996 * 15 14 12 42 42 H 1.09495 * 109.92581 * 131.29146 * 15 14 12 43 43 H 1.09444 * 109.02483 * 27.86250 * 18 9 7 44 44 H 1.09455 * 108.97520 * 269.92517 * 18 9 7 45 45 H 0.96999 * 120.00281 * 180.02562 * 23 22 20 46 46 H 1.08002 * 119.81536 * 180.24765 * 28 6 4 47 47 H 1.09000 * 109.47627 * 95.25271 * 30 29 28 48 48 H 1.08997 * 109.47054 * 215.25670 * 30 29 28 49 49 H 1.08999 * 109.47177 * 335.25525 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0047 5 8 4.2053 2.2327 0.0092 6 6 4.2724 -0.1133 -0.0016 7 6 5.7436 -0.1847 -0.0022 8 8 6.3799 0.3869 -0.8669 9 7 6.3853 -0.8841 0.9565 10 6 5.6328 -1.4608 2.0562 11 6 5.6658 -0.5850 3.2979 12 6 6.9990 -0.6002 4.0124 13 1 6.9495 -0.0404 4.9510 14 6 7.4039 -2.0685 4.2558 15 6 8.1967 -2.4657 2.9955 16 6 8.4825 -1.1607 2.2716 17 1 9.5726 -1.0693 2.1668 18 6 7.8664 -1.0661 0.8831 19 7 8.0198 -0.0253 3.0982 20 6 8.4443 1.2753 3.0357 21 1 8.0226 2.0136 3.7016 22 6 9.4166 1.6446 2.1164 23 7 9.9302 0.7449 1.3045 24 14 9.9962 3.4184 2.0315 25 1 10.5725 3.8140 3.3417 26 1 11.0318 3.5507 0.9755 27 1 8.8454 4.3003 1.7104 28 6 3.5076 -1.2617 -0.0011 29 7 2.1663 -1.1847 -0.0006 30 6 1.3880 -2.4257 -0.0007 31 1 -0.3633 -0.0943 1.0234 32 1 -0.3634 0.9334 -0.4299 33 1 -0.3633 -0.8390 -0.5933 34 1 1.6136 2.1083 0.0005 35 1 4.5895 -1.5556 1.7371 36 1 6.0087 -2.4477 2.2883 37 1 5.4287 0.4385 3.0102 38 1 4.8958 -0.9379 3.9866 39 1 8.0359 -2.1489 5.1448 40 1 6.5209 -2.6996 4.3719 41 1 7.6215 -3.1434 2.3678 42 1 9.1368 -2.9480 3.2826 43 1 8.3036 -0.2201 0.3437 44 1 8.0853 -1.9800 0.3219 45 1 10.6099 1.0028 0.6623 46 1 3.9899 -2.2281 -0.0016 47 1 1.1155 -2.6839 1.0226 48 1 0.4838 -2.2875 -0.5936 49 1 1.9854 -3.2293 -0.4313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045797291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:07 Heat of formation + Delta-G solvation = -8.198260 kcal Electronic energy + Delta-G solvation = -32841.662187 eV Core-core repulsion = 28769.771382 eV Total energy + Delta-G solvation = -4071.890805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.30524 -41.07027 -39.55972 -38.81102 -35.98508 -34.76277 -34.30955 -33.64930 -33.01242 -31.23869 -29.53254 -28.34357 -27.62351 -27.34897 -25.74500 -25.17710 -23.64873 -22.64388 -21.33750 -21.00692 -20.11417 -18.95825 -18.62119 -18.14742 -17.52880 -17.17717 -16.80225 -16.67499 -16.54779 -16.06447 -15.92543 -15.63043 -15.30479 -14.93784 -14.74081 -14.46680 -14.22446 -14.11198 -13.89705 -13.81026 -13.60185 -13.52027 -13.32700 -13.14887 -13.00792 -12.77869 -12.71391 -12.66475 -12.55177 -12.48693 -12.26127 -12.06069 -11.55402 -11.46018 -11.27555 -11.10076 -10.82380 -10.63344 -10.40367 -10.27443 -9.37851 -8.98245 -8.78773 -7.78954 -5.13189 -0.04903 0.31149 1.30514 1.40069 1.41485 1.48040 1.74359 2.30818 2.46345 2.71180 3.30330 3.33710 3.56561 3.63136 3.67890 3.82308 3.97483 4.10364 4.15242 4.17340 4.30349 4.31505 4.44518 4.49517 4.51886 4.54620 4.71459 4.73317 4.76318 4.78420 4.82584 4.87881 4.90465 4.91322 5.12547 5.15299 5.18576 5.25911 5.31912 5.35336 5.40373 5.48795 5.61860 5.73481 5.76664 5.82837 5.91062 6.03651 6.33288 6.74716 7.08170 7.15186 7.43238 7.82402 8.50810 9.23370 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.004464 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.537942 B = 6270.918722 C = 7343.464637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.196 3.804 3 C -0.312 4.312 4 C 0.377 3.623 5 O -0.595 6.595 6 C -0.335 4.335 7 C 0.565 3.435 8 O -0.604 6.604 9 N -0.584 5.584 10 C 0.109 3.891 11 C -0.140 4.140 12 C 0.137 3.863 13 H 0.049 0.951 14 C -0.108 4.108 15 C -0.118 4.118 16 C 0.160 3.840 17 H 0.059 0.941 18 C 0.123 3.877 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.063 0.937 22 C -0.058 4.058 23 N -0.927 5.927 24 Si 0.954 3.046 25 H -0.266 1.266 26 H -0.291 1.291 27 H -0.308 1.308 28 C 0.207 3.793 29 N -0.453 5.453 30 C 0.033 3.967 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.002 0.998 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.241 0.759 46 H 0.212 0.788 47 H 0.111 0.889 48 H 0.121 0.879 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.942 -20.498 2.364 33.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 C -0.336 4.336 4 C 0.272 3.728 5 O -0.487 6.487 6 C -0.345 4.345 7 C 0.354 3.646 8 O -0.485 6.485 9 N -0.315 5.315 10 C -0.013 4.013 11 C -0.180 4.180 12 C 0.031 3.969 13 H 0.067 0.933 14 C -0.146 4.146 15 C -0.156 4.156 16 C 0.053 3.947 17 H 0.077 0.923 18 C 0.000 4.000 19 N -0.327 5.327 20 C -0.347 4.347 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.577 5.577 24 Si 0.784 3.216 25 H -0.191 1.191 26 H -0.217 1.217 27 H -0.236 1.236 28 C 0.074 3.926 29 N -0.137 5.137 30 C -0.105 4.105 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.021 0.979 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.229 0.771 47 H 0.130 0.870 48 H 0.139 0.861 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -26.256 -19.725 1.860 32.892 hybrid contribution 1.501 2.569 -0.594 3.034 sum -24.754 -17.156 1.266 30.145 Atomic orbital electron populations 1.21413 0.83337 1.06831 1.06336 1.20846 0.97160 0.83707 0.89574 1.21995 0.93250 0.99826 1.18490 1.19118 0.90893 0.87514 0.75227 1.90774 1.72212 1.36287 1.49405 1.22148 0.93131 0.96819 1.22409 1.18311 0.87482 0.77268 0.81574 1.90699 1.69537 1.46602 1.41711 1.48318 1.08284 1.52057 1.22871 1.21418 0.96499 0.97621 0.85751 1.21993 0.99434 0.98222 0.98382 1.21434 0.88649 0.94647 0.92208 0.93277 1.22452 1.00809 0.94237 0.97129 1.22102 1.00834 0.95446 0.97202 1.20854 0.98901 0.86781 0.88178 0.92293 1.22788 0.77531 0.99810 0.99843 1.45110 1.44197 1.03991 1.39426 1.19017 1.15429 0.85329 1.14892 0.91909 1.25221 1.00830 1.00294 0.98788 1.69913 1.31390 1.32098 1.24274 0.85516 0.76894 0.81616 0.77531 1.19121 1.21696 1.23625 1.22359 0.82914 0.98889 0.88396 1.43175 1.04516 1.09070 1.56908 1.23152 0.98319 0.81827 1.07187 0.86720 0.88657 0.86430 0.83109 0.89321 0.87151 0.97852 0.88202 0.91781 0.87157 0.89089 0.91558 0.92357 0.93797 0.94976 0.77134 0.87023 0.86051 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.27 9.36 71.23 0.67 0.40 16 2 C 0.20 2.83 6.64 41.20 0.27 3.10 16 3 C -0.31 -8.87 9.57 22.34 0.21 -8.66 16 4 C 0.38 16.69 6.97 25.45 0.18 16.86 16 5 O -0.60 -35.68 17.48 -5.62 -0.10 -35.78 16 6 C -0.33 -12.82 5.02 -18.63 -0.09 -12.91 16 7 C 0.56 28.38 6.93 86.60 0.60 28.98 16 8 O -0.60 -38.73 16.57 -4.09 -0.07 -38.80 16 9 N -0.58 -25.68 2.87 -824.00 -2.36 -28.04 16 10 C 0.11 3.31 4.92 86.29 0.42 3.74 16 11 C -0.14 -4.89 5.08 29.70 0.15 -4.74 16 12 C 0.14 5.36 3.93 44.44 0.17 5.54 16 13 H 0.05 1.98 8.18 -2.17 -0.02 1.96 16 14 C -0.11 -3.05 5.96 31.38 0.19 -2.86 16 15 C -0.12 -3.79 5.69 30.62 0.17 -3.62 16 16 C 0.16 7.59 2.18 44.11 0.10 7.68 16 17 H 0.06 3.35 6.24 -1.91 -0.01 3.34 16 18 C 0.12 6.20 5.51 85.55 0.47 6.67 16 19 N -0.60 -31.78 2.57 -648.45 -1.67 -33.45 16 20 C -0.22 -13.48 10.38 84.03 0.87 -12.61 16 21 H 0.06 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 23 N -0.93 -59.90 8.21 21.65 0.18 -59.72 16 24 Si 0.95 53.87 29.55 68.60 2.03 55.90 16 25 H -0.27 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.29 -16.31 7.11 99.48 0.71 -15.60 16 27 H -0.31 -18.41 7.11 99.48 0.71 -17.70 16 28 C 0.21 4.09 7.73 84.25 0.65 4.74 16 29 N -0.45 -4.86 2.97 -532.80 -1.58 -6.45 16 30 C 0.03 -0.10 9.99 127.77 1.28 1.17 16 31 H 0.11 -0.14 8.14 -2.38 -0.02 -0.16 16 32 H 0.09 0.29 7.98 -2.39 -0.02 0.27 16 33 H 0.12 -0.53 5.96 -2.39 -0.01 -0.55 16 34 H 0.15 4.00 8.01 -2.91 -0.02 3.98 16 35 H 0.09 2.01 4.26 -2.12 -0.01 2.01 16 36 H 0.11 2.54 4.66 -2.84 -0.01 2.52 16 37 H 0.00 0.12 8.14 -2.43 -0.02 0.10 16 38 H 0.10 2.45 8.16 -2.30 -0.02 2.44 16 39 H 0.06 1.76 8.17 -2.19 -0.02 1.74 16 40 H 0.11 2.05 7.52 -2.30 -0.02 2.03 16 41 H 0.09 2.32 6.36 -2.48 -0.02 2.30 16 42 H 0.07 2.03 8.18 -2.12 -0.02 2.02 16 43 H 0.06 3.77 5.27 -2.15 -0.01 3.75 16 44 H 0.04 1.97 8.18 -2.14 -0.02 1.95 16 45 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.21 2.35 7.50 -2.91 -0.02 2.33 16 47 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.12 -0.93 5.89 -2.39 -0.01 -0.95 16 49 H 0.11 -0.70 7.87 -2.39 -0.02 -0.72 16 Total: -1.00 -118.46 371.84 4.20 -114.26 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 0.99 Total: 1.81 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.78 Total: 30.27 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.44 Total: -127.66 kcal Atomic # 8 Polarization: -74.41 SS G_CDS: -0.17 Total: -74.57 kcal Atomic # 14 Polarization: 53.87 SS G_CDS: 2.03 Total: 55.90 kcal Total: -118.46 4.20 -114.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045797291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.063 kcal (2) G-P(sol) polarization free energy of solvation -118.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds