Wall clock time and date at job start Wed Apr 1 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40203 * 120.36716 * 2 1 4 4 C 1.35349 * 119.94716 * 180.23539 * 3 2 1 5 5 N 1.35760 * 120.70265 * 359.45924 * 4 3 2 6 6 C 1.46501 * 119.62629 * 180.26293 * 5 4 3 7 7 C 1.50699 * 109.47180 * 270.29693 * 6 5 4 8 8 O 1.21274 * 120.00175 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99897 * 179.97438 * 7 6 5 10 10 C 1.44793 * 120.18154 * 359.72561 * 9 7 6 11 11 C 1.50998 * 112.52136 * 264.67505 * 10 9 7 12 12 C 1.51305 * 113.25009 * 285.43237 * 11 10 9 13 13 H 1.09002 * 111.32016 * 185.14706 * 12 11 10 14 14 C 1.54716 * 106.48479 * 307.57152 * 12 11 10 15 15 C 1.54232 * 104.37531 * 89.11319 * 14 12 11 16 16 C 1.50869 * 105.27408 * 11.57025 * 15 14 12 17 17 H 1.09004 * 105.90558 * 122.19542 * 16 15 14 18 18 C 1.49820 * 120.18198 * 179.97438 * 9 7 6 19 19 N 1.48063 * 109.90720 * 7.86871 * 16 15 14 20 20 C 1.36941 * 127.84334 * 155.16689 * 19 16 15 21 21 H 1.08005 * 119.99893 * 180.02562 * 20 19 16 22 22 C 1.38803 * 120.00066 * 0.02562 * 20 19 16 23 23 N 1.31628 * 119.99794 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00237 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46718 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47145 * 119.99860 * 24 22 20 27 27 H 1.48498 * 109.47006 * 239.99837 * 24 22 20 28 28 C 1.34662 * 120.74896 * 0.56549 * 5 4 3 29 29 O 1.22063 * 119.98273 * 179.72333 * 28 5 4 30 30 C 1.36401 * 120.36792 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47389 * 90.00097 * 1 2 3 32 32 H 1.09006 * 109.47281 * 210.00086 * 1 2 3 33 33 H 1.09004 * 109.47345 * 329.99868 * 1 2 3 34 34 H 1.08002 * 120.02245 * 359.94920 * 3 2 1 35 35 H 1.07997 * 119.64737 * 179.74329 * 4 3 2 36 36 H 1.09001 * 109.46666 * 30.29829 * 6 5 4 37 37 H 1.09006 * 109.46904 * 150.29482 * 6 5 4 38 38 H 1.08999 * 108.92819 * 25.28573 * 10 9 7 39 39 H 1.09001 * 108.93360 * 143.86661 * 10 9 7 40 40 H 1.08999 * 108.79865 * 164.40860 * 11 10 9 41 41 H 1.09001 * 108.65484 * 46.35739 * 11 10 9 42 42 H 1.08995 * 110.45690 * 207.83759 * 14 12 11 43 43 H 1.08999 * 110.45363 * 330.26954 * 14 12 11 44 44 H 1.09000 * 110.28993 * 252.62106 * 15 14 12 45 45 H 1.09004 * 110.28548 * 130.51501 * 15 14 12 46 46 H 1.08992 * 109.54339 * 270.53561 * 18 9 7 47 47 H 1.09001 * 109.54192 * 30.71475 * 18 9 7 48 48 H 0.97001 * 119.99796 * 179.97438 * 23 22 20 49 49 H 1.07999 * 120.34709 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1998 -0.0048 5 7 4.2538 0.0274 0.0013 6 6 5.7187 0.0443 0.0018 7 6 6.2214 0.0502 -1.4189 8 8 5.4337 0.0418 -2.3409 9 7 7.5464 0.0660 -1.6647 10 6 8.4903 0.0832 -0.5669 11 6 8.9478 1.4797 -0.2193 12 6 9.9273 2.0536 -1.2195 13 1 10.3053 3.0224 -0.8929 14 6 11.0591 1.0100 -1.3741 15 6 10.5749 0.0854 -2.5096 16 6 9.3903 0.7926 -3.1202 17 1 9.6343 0.9288 -4.1738 18 6 8.0507 0.0714 -3.0755 19 7 9.2637 2.1516 -2.5462 20 6 8.6699 3.2495 -3.1094 21 1 8.6500 4.1871 -2.5737 22 6 8.0938 3.1575 -4.3689 23 7 8.1177 2.0147 -5.0216 24 14 7.2844 4.6554 -5.1376 25 1 7.3903 5.8075 -4.2066 26 1 7.9664 4.9859 -6.4146 27 1 5.8527 4.3632 -5.4022 28 6 3.6016 -1.1507 0.0009 29 8 4.2312 -2.1965 0.0014 30 6 2.1965 -1.1769 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6821 2.1486 -0.0008 35 1 4.1102 2.1344 -0.0090 36 1 6.0716 0.9383 0.5159 37 1 6.0921 -0.8416 0.5157 38 1 8.0196 -0.3591 0.3111 39 1 9.3600 -0.5149 -0.8388 40 1 9.4210 1.4601 0.7624 41 1 8.0748 2.1307 -0.1712 42 1 11.9925 1.4988 -1.6528 43 1 11.1864 0.4465 -0.4498 44 1 10.2715 -0.8809 -2.1068 45 1 11.3617 -0.0443 -3.2528 46 1 8.1767 -0.9544 -3.4216 47 1 7.3357 0.5872 -3.7163 48 1 7.7147 1.9503 -5.9016 49 1 1.6682 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045857130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:56 Heat of formation + Delta-G solvation = 16.361983 kcal Electronic energy + Delta-G solvation = -32327.116404 eV Core-core repulsion = 28256.290612 eV Total energy + Delta-G solvation = -4070.825793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.36309 -39.86739 -38.02104 -36.89500 -35.13155 -34.36955 -33.05946 -31.69978 -30.42663 -29.51355 -29.38791 -27.68729 -26.53820 -25.73019 -23.78543 -23.62946 -22.33902 -21.47474 -19.90823 -19.32532 -18.53600 -17.49337 -17.46192 -16.84805 -16.66780 -15.95421 -15.48249 -15.12253 -14.82784 -14.68499 -14.53414 -14.15685 -13.95348 -13.82040 -13.56686 -13.26401 -13.07607 -12.74982 -12.59519 -12.41773 -12.21289 -12.05161 -11.74280 -11.73512 -11.60066 -11.50388 -11.31409 -11.27516 -10.93002 -10.86486 -10.80810 -10.24231 -10.03602 -9.94756 -9.81594 -9.72334 -9.60964 -9.50529 -9.05676 -8.66521 -7.87188 -7.80975 -6.93667 -5.75425 -3.14021 0.89981 1.97313 2.63871 3.15298 3.36874 3.40791 3.45651 3.58110 3.87358 4.41698 4.56702 4.63817 4.79132 4.88573 4.99065 5.12511 5.21040 5.22680 5.23667 5.37099 5.39047 5.41416 5.49341 5.53596 5.57404 5.64092 5.69829 5.79139 5.86974 5.98026 6.04202 6.10598 6.17317 6.22285 6.35924 6.38832 6.43403 6.55224 6.58073 6.67153 6.73164 6.91431 6.97975 7.17870 7.18612 7.45651 7.62008 7.82318 8.14202 8.19990 8.21518 8.77520 9.11445 9.71519 10.43534 11.31129 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.004074 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.412029 B = 6871.244192 C = 8270.664995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.016 3.984 3 C -0.238 4.238 4 C 0.155 3.845 5 N -0.477 5.477 6 C 0.070 3.930 7 C 0.498 3.502 8 O -0.535 6.535 9 N -0.584 5.584 10 C 0.103 3.897 11 C -0.151 4.151 12 C 0.151 3.849 13 H 0.063 0.937 14 C -0.130 4.130 15 C -0.125 4.125 16 C 0.142 3.858 17 H 0.100 0.900 18 C 0.129 3.871 19 N -0.579 5.579 20 C -0.213 4.213 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.522 3.478 29 O -0.556 6.556 30 C -0.253 4.253 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.128 0.872 48 H 0.254 0.746 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 -1.953 13.506 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 C -0.261 4.261 4 C 0.027 3.973 5 N -0.186 5.186 6 C -0.055 4.055 7 C 0.283 3.717 8 O -0.412 6.412 9 N -0.317 5.317 10 C -0.021 4.021 11 C -0.192 4.192 12 C 0.043 3.957 13 H 0.081 0.919 14 C -0.169 4.169 15 C -0.163 4.163 16 C 0.035 3.965 17 H 0.118 0.882 18 C 0.008 3.992 19 N -0.302 5.302 20 C -0.340 4.340 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.207 1.207 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.325 3.675 29 O -0.439 6.439 30 C -0.275 4.275 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.145 0.855 48 H 0.064 0.936 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.171 -2.520 12.758 13.995 hybrid contribution -0.392 0.875 -0.403 1.040 sum -5.563 -1.646 12.355 13.649 Atomic orbital electron populations 1.20907 0.90566 1.03195 1.03091 1.20166 0.96577 0.92725 0.89330 1.20468 0.92319 0.98811 1.14466 1.21935 0.93613 0.89722 0.92058 1.45088 1.07638 1.07156 1.58757 1.21951 0.78998 1.06341 0.98230 1.20334 0.83375 0.77958 0.90072 1.90713 1.54940 1.50060 1.45510 1.48450 1.03818 1.70540 1.08905 1.20964 0.94372 0.97716 0.89070 1.21979 1.01230 0.96951 0.99059 1.21128 0.91109 0.95720 0.87754 0.91906 1.22666 0.98817 0.97663 0.97778 1.21976 0.98668 0.97934 0.97742 1.20528 0.89924 0.84593 1.01415 0.88203 1.23305 0.99234 0.97887 0.78799 1.44983 1.65523 1.06383 1.13304 1.18992 1.28443 0.88041 0.98553 0.90349 1.24686 1.01108 0.97216 0.97287 1.69716 1.49750 1.22984 1.14039 0.86039 0.78990 0.81593 0.79089 1.20721 1.21774 1.21752 1.17053 0.89296 0.82481 0.78683 1.90928 1.69248 1.30343 1.53431 1.21857 0.92330 0.99362 1.13912 0.90169 0.91004 0.90895 0.83872 0.82193 0.86712 0.85967 0.92498 0.89735 0.92453 0.92538 0.92374 0.92113 0.92289 0.92186 0.95056 0.85472 0.93558 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.03 36.00 0.36 -0.62 16 2 C 0.02 0.19 5.89 -104.55 -0.62 -0.43 16 3 C -0.24 -2.71 9.71 -39.87 -0.39 -3.10 16 4 C 0.15 2.01 10.28 -16.84 -0.17 1.83 16 5 N -0.48 -7.56 2.07 -121.06 -0.25 -7.81 16 6 C 0.07 1.08 4.29 -5.19 -0.02 1.06 16 7 C 0.50 10.18 7.75 -10.99 -0.09 10.09 16 8 O -0.54 -13.41 16.09 5.56 0.09 -13.32 16 9 N -0.58 -11.51 2.88 -173.95 -0.50 -12.01 16 10 C 0.10 1.59 4.95 -5.96 -0.03 1.56 16 11 C -0.15 -2.30 5.00 -28.59 -0.14 -2.45 16 12 C 0.15 2.70 4.08 -66.69 -0.27 2.43 16 13 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.13 -2.00 6.01 -25.18 -0.15 -2.15 16 15 C -0.13 -2.14 5.78 -27.16 -0.16 -2.30 16 16 C 0.14 3.09 1.94 -68.55 -0.13 2.96 16 17 H 0.10 2.56 6.14 -51.93 -0.32 2.24 16 18 C 0.13 2.92 5.68 -2.60 -0.01 2.91 16 19 N -0.58 -13.19 2.69 -156.93 -0.42 -13.62 16 20 C -0.21 -5.48 10.40 -15.06 -0.16 -5.64 16 21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 23 N -0.92 -25.32 8.14 55.49 0.45 -24.87 16 24 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.52 9.30 7.40 -15.44 -0.11 9.18 16 29 O -0.56 -11.75 16.64 4.86 0.08 -11.67 16 30 C -0.25 -3.69 9.65 -39.38 -0.38 -4.07 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.16 1.69 8.04 -52.49 -0.42 1.26 16 36 H 0.11 1.38 7.98 -51.93 -0.41 0.96 16 37 H 0.12 1.80 6.66 -51.93 -0.35 1.45 16 38 H 0.06 0.72 6.21 -51.93 -0.32 0.40 16 39 H 0.08 1.26 3.93 -51.93 -0.20 1.06 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 44 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.13 3.50 5.33 -51.93 -0.28 3.23 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -34.53 376.95 -9.66 -44.19 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.20 Total: 5.73 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -2.57 Total: 10.98 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.72 Total: -58.30 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.17 Total: -24.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.53 -9.66 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045857130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.555 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds