Wall clock time and date at job start Wed Apr 1 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40203 * 120.36716 * 2 1 4 4 C 1.35349 * 119.94716 * 180.23539 * 3 2 1 5 5 N 1.35760 * 120.70265 * 359.45924 * 4 3 2 6 6 C 1.46501 * 119.62629 * 180.26293 * 5 4 3 7 7 C 1.50699 * 109.47180 * 270.29693 * 6 5 4 8 8 O 1.21274 * 120.00175 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99897 * 179.97438 * 7 6 5 10 10 C 1.44793 * 120.18154 * 359.72561 * 9 7 6 11 11 C 1.50998 * 112.52136 * 264.67505 * 10 9 7 12 12 C 1.51305 * 113.25009 * 285.43237 * 11 10 9 13 13 H 1.09002 * 111.32016 * 185.14706 * 12 11 10 14 14 C 1.54716 * 106.48479 * 307.57152 * 12 11 10 15 15 C 1.54232 * 104.37531 * 89.11319 * 14 12 11 16 16 C 1.50869 * 105.27408 * 11.57025 * 15 14 12 17 17 H 1.09004 * 105.90558 * 122.19542 * 16 15 14 18 18 C 1.49820 * 120.18198 * 179.97438 * 9 7 6 19 19 N 1.48063 * 109.90720 * 7.86871 * 16 15 14 20 20 C 1.36941 * 127.84334 * 155.16689 * 19 16 15 21 21 H 1.08005 * 119.99893 * 180.02562 * 20 19 16 22 22 C 1.38803 * 120.00066 * 0.02562 * 20 19 16 23 23 N 1.31628 * 119.99794 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00237 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46718 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47145 * 119.99860 * 24 22 20 27 27 H 1.48498 * 109.47006 * 239.99837 * 24 22 20 28 28 C 1.34662 * 120.74896 * 0.56549 * 5 4 3 29 29 O 1.22063 * 119.98273 * 179.72333 * 28 5 4 30 30 C 1.36401 * 120.36792 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47389 * 90.00097 * 1 2 3 32 32 H 1.09006 * 109.47281 * 210.00086 * 1 2 3 33 33 H 1.09004 * 109.47345 * 329.99868 * 1 2 3 34 34 H 1.08002 * 120.02245 * 359.94920 * 3 2 1 35 35 H 1.07997 * 119.64737 * 179.74329 * 4 3 2 36 36 H 1.09001 * 109.46666 * 30.29829 * 6 5 4 37 37 H 1.09006 * 109.46904 * 150.29482 * 6 5 4 38 38 H 1.08999 * 108.92819 * 25.28573 * 10 9 7 39 39 H 1.09001 * 108.93360 * 143.86661 * 10 9 7 40 40 H 1.08999 * 108.79865 * 164.40860 * 11 10 9 41 41 H 1.09001 * 108.65484 * 46.35739 * 11 10 9 42 42 H 1.08995 * 110.45690 * 207.83759 * 14 12 11 43 43 H 1.08999 * 110.45363 * 330.26954 * 14 12 11 44 44 H 1.09000 * 110.28993 * 252.62106 * 15 14 12 45 45 H 1.09004 * 110.28548 * 130.51501 * 15 14 12 46 46 H 1.08992 * 109.54339 * 270.53561 * 18 9 7 47 47 H 1.09001 * 109.54192 * 30.71475 * 18 9 7 48 48 H 0.97001 * 119.99796 * 179.97438 * 23 22 20 49 49 H 1.07999 * 120.34709 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1998 -0.0048 5 7 4.2538 0.0274 0.0013 6 6 5.7187 0.0443 0.0018 7 6 6.2214 0.0502 -1.4189 8 8 5.4337 0.0418 -2.3409 9 7 7.5464 0.0660 -1.6647 10 6 8.4903 0.0832 -0.5669 11 6 8.9478 1.4797 -0.2193 12 6 9.9273 2.0536 -1.2195 13 1 10.3053 3.0224 -0.8929 14 6 11.0591 1.0100 -1.3741 15 6 10.5749 0.0854 -2.5096 16 6 9.3903 0.7926 -3.1202 17 1 9.6343 0.9288 -4.1738 18 6 8.0507 0.0714 -3.0755 19 7 9.2637 2.1516 -2.5462 20 6 8.6699 3.2495 -3.1094 21 1 8.6500 4.1871 -2.5737 22 6 8.0938 3.1575 -4.3689 23 7 8.1177 2.0147 -5.0216 24 14 7.2844 4.6554 -5.1376 25 1 7.3903 5.8075 -4.2066 26 1 7.9664 4.9859 -6.4146 27 1 5.8527 4.3632 -5.4022 28 6 3.6016 -1.1507 0.0009 29 8 4.2312 -2.1965 0.0014 30 6 2.1965 -1.1769 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6821 2.1486 -0.0008 35 1 4.1102 2.1344 -0.0090 36 1 6.0716 0.9383 0.5159 37 1 6.0921 -0.8416 0.5157 38 1 8.0196 -0.3591 0.3111 39 1 9.3600 -0.5149 -0.8388 40 1 9.4210 1.4601 0.7624 41 1 8.0748 2.1307 -0.1712 42 1 11.9925 1.4988 -1.6528 43 1 11.1864 0.4465 -0.4498 44 1 10.2715 -0.8809 -2.1068 45 1 11.3617 -0.0443 -3.2528 46 1 8.1767 -0.9544 -3.4216 47 1 7.3357 0.5872 -3.7163 48 1 7.7147 1.9503 -5.9016 49 1 1.6682 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045857130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:55 Heat of formation + Delta-G solvation = -5.469809 kcal Electronic energy + Delta-G solvation = -32328.063102 eV Core-core repulsion = 28256.290612 eV Total energy + Delta-G solvation = -4071.772490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.56401 -41.33472 -39.57427 -38.11396 -36.24416 -35.97806 -34.80338 -33.25525 -31.46067 -31.27679 -30.51608 -28.97211 -27.80026 -27.26012 -25.57450 -24.68431 -23.68709 -22.57882 -21.33481 -21.03042 -19.96307 -18.93877 -18.57894 -18.36682 -18.05581 -17.07390 -16.92150 -16.78379 -16.34585 -16.21188 -15.94104 -15.64679 -15.21213 -14.99877 -14.81979 -14.61076 -14.19530 -14.15623 -13.94344 -13.53787 -13.49360 -13.33765 -13.15149 -13.02250 -13.01247 -12.86393 -12.68668 -12.64999 -12.49808 -12.47471 -12.35003 -11.97059 -11.59445 -11.43222 -11.32695 -11.17961 -11.11152 -10.81710 -10.68116 -10.33930 -9.44115 -9.01130 -8.79816 -7.75314 -5.12083 -0.14390 0.88498 1.42259 1.43937 1.47927 1.52249 1.62175 2.18792 2.49621 2.67085 3.36447 3.52135 3.60418 3.65800 3.69376 3.83854 3.91300 4.03495 4.10041 4.10562 4.17607 4.27813 4.30563 4.36505 4.45936 4.57756 4.74489 4.75855 4.79387 4.82127 4.86130 4.91036 4.92421 5.07765 5.12728 5.13896 5.21752 5.27918 5.34259 5.39223 5.45353 5.53830 5.57042 5.63278 5.69876 5.84680 5.97853 6.04594 6.32469 6.62911 6.94388 7.13133 7.24323 7.82297 8.54912 9.28107 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.004074 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.412029 B = 6871.244192 C = 8270.664995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.033 3.967 3 C -0.228 4.228 4 C 0.134 3.866 5 N -0.482 5.482 6 C 0.082 3.918 7 C 0.485 3.515 8 O -0.596 6.596 9 N -0.584 5.584 10 C 0.092 3.908 11 C -0.143 4.143 12 C 0.137 3.863 13 H 0.066 0.934 14 C -0.117 4.117 15 C -0.120 4.120 16 C 0.154 3.846 17 H 0.050 0.950 18 C 0.135 3.865 19 N -0.600 5.600 20 C -0.207 4.207 21 H 0.082 0.918 22 C -0.064 4.064 23 N -0.937 5.937 24 Si 0.961 3.039 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.309 1.309 28 C 0.502 3.498 29 O -0.611 6.611 30 C -0.288 4.288 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.024 0.976 47 H 0.076 0.924 48 H 0.238 0.762 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 -0.588 17.345 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.028 3.972 3 C -0.251 4.251 4 C 0.008 3.992 5 N -0.190 5.190 6 C -0.043 4.043 7 C 0.273 3.727 8 O -0.477 6.477 9 N -0.315 5.315 10 C -0.030 4.030 11 C -0.183 4.183 12 C 0.031 3.969 13 H 0.084 0.916 14 C -0.155 4.155 15 C -0.158 4.158 16 C 0.046 3.954 17 H 0.068 0.932 18 C 0.012 3.988 19 N -0.323 5.323 20 C -0.336 4.336 21 H 0.100 0.900 22 C -0.257 4.257 23 N -0.587 5.587 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.237 1.237 28 C 0.308 3.692 29 O -0.499 6.499 30 C -0.309 4.309 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.199 0.801 35 H 0.203 0.797 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.094 0.906 48 H 0.048 0.952 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.015 -1.104 16.680 17.453 hybrid contribution -0.474 0.526 -1.589 1.740 sum -5.488 -0.578 15.091 16.068 Atomic orbital electron populations 1.21029 0.87483 1.05106 1.04013 1.20647 0.98742 0.91802 0.85967 1.21040 0.91985 1.00161 1.11866 1.22558 0.94711 0.89612 0.92365 1.45119 1.07861 1.07578 1.58478 1.21974 0.79152 1.08606 0.94587 1.21275 0.83101 0.76608 0.91755 1.90676 1.56463 1.52722 1.47868 1.48488 1.04655 1.69705 1.08663 1.21346 0.94246 0.98617 0.88797 1.21860 1.00141 0.95832 1.00440 1.21487 0.92370 0.97110 0.85915 0.91599 1.22631 0.97643 0.96602 0.98657 1.21897 0.96496 0.98763 0.98622 1.20399 0.90780 0.84908 0.99267 0.93229 1.22796 0.98789 0.96739 0.80493 1.45181 1.65509 1.05850 1.15768 1.19250 1.27019 0.89179 0.98171 0.90011 1.25324 1.02957 0.98982 0.98446 1.69986 1.50921 1.24319 1.13469 0.85237 0.76925 0.80152 0.78458 1.18735 1.22397 1.23725 1.17582 0.90479 0.82462 0.78701 1.90870 1.70301 1.32018 1.56686 1.21926 0.91255 1.00943 1.16778 0.89421 0.89947 0.88242 0.80120 0.79724 0.82590 0.85081 0.88725 0.88665 0.87365 0.94045 0.91998 0.87799 0.90253 0.92027 0.95785 0.90628 0.95187 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.03 71.23 0.71 -0.84 16 2 C 0.03 0.70 5.89 -19.82 -0.12 0.59 16 3 C -0.23 -4.55 9.71 22.08 0.21 -4.34 16 4 C 0.13 3.21 10.28 83.42 0.86 4.07 16 5 N -0.48 -14.96 2.07 -655.06 -1.36 -16.32 16 6 C 0.08 2.40 4.29 85.63 0.37 2.77 16 7 C 0.49 20.06 7.75 87.66 0.68 20.74 16 8 O -0.60 -31.40 16.09 -3.01 -0.05 -31.45 16 9 N -0.58 -22.83 2.88 -822.66 -2.37 -25.19 16 10 C 0.09 2.51 4.95 86.05 0.43 2.94 16 11 C -0.14 -3.70 5.00 29.39 0.15 -3.55 16 12 C 0.14 4.48 4.08 44.60 0.18 4.66 16 13 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.12 -3.10 6.01 31.60 0.19 -2.91 16 15 C -0.12 -3.89 5.78 30.32 0.18 -3.71 16 16 C 0.15 6.81 1.94 43.74 0.09 6.89 16 17 H 0.05 2.69 6.14 -2.38 -0.01 2.68 16 18 C 0.13 6.41 5.68 85.47 0.49 6.90 16 19 N -0.60 -27.21 2.69 -650.42 -1.75 -28.96 16 20 C -0.21 -10.80 10.40 84.03 0.87 -9.93 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.06 -3.57 5.48 84.86 0.46 -3.11 16 23 N -0.94 -55.19 8.14 21.65 0.18 -55.01 16 24 Si 0.96 46.18 29.55 68.60 2.03 48.21 16 25 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 27 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 28 C 0.50 18.28 7.40 84.82 0.63 18.91 16 29 O -0.61 -26.94 16.64 -5.52 -0.09 -27.03 16 30 C -0.29 -8.44 9.65 22.40 0.22 -8.22 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.94 8.09 -2.38 -0.02 0.92 16 33 H 0.10 0.81 8.10 -2.38 -0.02 0.79 16 34 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.19 3.37 8.04 -2.91 -0.02 3.35 16 36 H 0.16 3.19 7.98 -2.39 -0.02 3.17 16 37 H 0.13 3.64 6.66 -2.38 -0.02 3.62 16 38 H 0.09 1.94 6.21 -2.39 -0.01 1.92 16 39 H 0.10 2.43 3.93 -2.39 -0.01 2.42 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 1.94 7.39 -2.39 -0.02 1.92 16 44 H 0.08 2.26 6.16 -2.39 -0.01 2.25 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 4.48 5.33 -2.39 -0.01 4.47 16 48 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -85.46 376.95 4.14 -81.32 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.96 Total: 22.59 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 6.59 Total: 31.86 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -5.30 Total: -125.48 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -0.14 Total: -58.49 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -85.46 4.14 -81.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045857130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.849 kcal (2) G-P(sol) polarization free energy of solvation -85.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds