Wall clock time and date at job start Wed Apr 1 2020 04:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.40905 * 2 1 4 4 C 1.38335 * 119.46087 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82803 * 180.02562 * 4 3 2 6 6 C 1.39991 * 118.34812 * 0.02562 * 4 3 2 7 7 C 1.47526 * 120.59714 * 179.97438 * 6 4 3 8 8 O 1.21588 * 119.99409 * 90.00344 * 7 6 4 9 9 N 1.34773 * 120.00138 * 270.00090 * 7 6 4 10 10 C 1.46497 * 119.99813 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.32849 * 34.63495 * 10 9 7 12 12 C 1.53034 * 109.18107 * 154.20045 * 10 9 7 13 13 C 1.53971 * 108.82349 * 175.58356 * 12 10 9 14 14 H 1.09000 * 112.99305 * 169.00157 * 13 12 10 15 15 C 1.55429 * 106.41385 * 293.81594 * 13 12 10 16 16 C 1.55170 * 100.35290 * 73.38202 * 15 13 12 17 17 H 1.09004 * 113.04729 * 162.98899 * 16 15 13 18 18 C 1.52997 * 109.32267 * 274.99587 * 10 9 7 19 19 N 1.47789 * 104.25661 * 40.55536 * 16 15 13 20 20 C 1.36931 * 125.85717 * 153.51042 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.71991 * 20 19 16 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47082 * 108.28362 * 333.76819 * 19 16 15 29 29 C 1.40282 * 118.80268 * 0.27186 * 6 4 3 30 30 O 1.35427 * 119.79625 * 179.72531 * 29 6 4 31 31 N 1.31887 * 119.40555 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46897 * 89.99483 * 1 2 3 33 33 H 1.08997 * 109.46902 * 209.99518 * 1 2 3 34 34 H 1.08998 * 109.46898 * 330.00329 * 1 2 3 35 35 H 1.08004 * 120.27478 * 0.02562 * 3 2 1 36 36 H 1.09000 * 109.47303 * 269.97664 * 5 4 3 37 37 H 1.08997 * 109.46912 * 29.97901 * 5 4 3 38 38 H 1.09000 * 109.47170 * 149.98316 * 5 4 3 39 39 H 0.97002 * 120.00004 * 359.97438 * 9 7 6 40 40 H 1.08991 * 109.57577 * 295.38011 * 12 10 9 41 41 H 1.09000 * 109.58086 * 55.78399 * 12 10 9 42 42 H 1.09001 * 111.24014 * 315.60176 * 15 13 12 43 43 H 1.09005 * 111.23535 * 191.15841 * 15 13 12 44 44 H 1.09001 * 109.53075 * 64.93495 * 18 10 9 45 45 H 1.09005 * 109.52881 * 304.71392 * 18 10 9 46 46 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.97587 * 120.22697 * 28 19 16 48 48 H 1.08998 * 109.97931 * 241.50889 * 28 19 16 49 49 H 0.96698 * 113.99849 * 90.00478 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3408 2.5012 0.0011 6 6 4.2356 -0.0250 0.0005 7 6 5.7098 -0.0815 0.0005 8 8 6.3171 -0.1049 1.0535 9 7 6.3831 -0.1073 -1.1666 10 6 7.8470 -0.1641 -1.1666 11 1 8.1848 -0.7623 -0.3205 12 6 8.3252 -0.8118 -2.4680 13 6 9.8637 -0.7667 -2.5094 14 1 10.2861 -1.3747 -3.3094 15 6 10.2566 0.7338 -2.6084 16 6 9.9416 1.2006 -1.1625 17 1 10.4111 2.1511 -0.9091 18 6 8.4086 1.2535 -1.0404 19 7 10.4175 0.0910 -0.3101 20 6 10.8323 0.1997 0.9904 21 1 10.8288 1.1625 1.4797 22 6 11.2515 -0.9288 1.6817 23 7 11.2552 -2.1021 1.0855 24 14 11.8101 -0.7818 3.4582 25 1 11.7123 0.6350 3.8922 26 1 10.9442 -1.6252 4.3207 27 1 13.2185 -1.2383 3.5735 28 6 10.3749 -1.1488 -1.1001 29 6 3.4757 -1.2042 -0.0059 30 8 4.0991 -2.4064 -0.0117 31 7 2.1546 -1.1490 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5138 35 1 1.6412 2.1376 0.0004 36 1 4.5275 2.8134 -1.0264 37 1 3.7617 3.2687 0.5146 38 1 5.2911 2.3580 0.5156 39 1 5.8985 -0.0891 -2.0067 40 1 7.9890 -1.8479 -2.5052 41 1 7.9207 -0.2637 -3.3190 42 1 9.6365 1.2572 -3.3362 43 1 11.3156 0.8502 -2.8390 44 1 8.1343 1.6692 -0.0709 45 1 8.0010 1.8789 -1.8348 46 1 11.5485 -2.8906 1.5685 47 1 11.3731 -1.5812 -1.1686 48 1 9.6911 -1.8612 -0.6386 49 1 4.2796 -2.7601 0.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047124023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:00 Heat of formation + Delta-G solvation = -13.398326 kcal Electronic energy + Delta-G solvation = -31650.937836 eV Core-core repulsion = 27578.821539 eV Total energy + Delta-G solvation = -4072.116297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.06167 -39.85916 -38.40279 -37.45299 -34.50981 -34.36036 -32.77738 -31.98381 -30.66003 -29.85679 -28.68081 -28.00651 -27.54417 -25.28247 -23.69677 -23.10264 -22.29531 -21.33162 -20.20151 -19.43328 -18.79114 -18.54412 -17.52113 -17.27841 -16.91778 -16.06737 -15.64493 -15.05955 -14.55992 -14.47704 -14.35294 -14.10581 -13.74576 -13.54187 -13.51273 -13.24194 -13.22166 -12.81249 -12.69868 -12.64192 -12.19959 -12.06701 -11.97309 -11.80066 -11.76917 -11.73879 -11.55897 -11.21160 -10.71010 -10.66668 -10.52472 -10.17132 -9.92313 -9.80506 -9.73623 -9.70385 -9.61549 -9.37337 -9.26701 -8.97630 -8.58845 -8.51499 -6.75330 -5.61831 -2.94040 0.60672 0.89456 2.78767 3.12227 3.32555 3.47709 3.53479 3.55382 3.61044 4.25847 4.31377 4.58528 4.71608 4.77964 4.99511 5.07854 5.15926 5.24117 5.25296 5.26572 5.34016 5.37313 5.45906 5.57472 5.60888 5.65657 5.71351 5.81765 5.90300 5.91305 5.95569 6.05648 6.09895 6.11776 6.14443 6.24283 6.25042 6.58439 6.63335 6.70422 6.87155 6.90078 6.98770 7.07864 7.30926 7.64849 7.65742 7.66565 7.79773 7.90924 8.33311 8.48832 9.31049 9.91464 10.57328 11.50150 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003341 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.068458 B = 8378.189070 C = 9072.651555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.189 4.189 4 C 0.011 3.989 5 C -0.126 4.126 6 C -0.196 4.196 7 C 0.568 3.432 8 O -0.515 6.515 9 N -0.713 5.713 10 C 0.147 3.853 11 H 0.116 0.884 12 C -0.112 4.112 13 C -0.118 4.118 14 H 0.082 0.918 15 C -0.128 4.128 16 C 0.157 3.843 17 H 0.065 0.935 18 C -0.135 4.135 19 N -0.595 5.595 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.908 3.092 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.181 3.819 29 C 0.354 3.646 30 O -0.475 6.475 31 N -0.508 5.508 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.391 0.609 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.250 0.750 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.986 7.154 -8.218 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.209 4.209 4 C 0.003 3.997 5 C -0.182 4.182 6 C -0.203 4.203 7 C 0.351 3.649 8 O -0.390 6.390 9 N -0.362 5.362 10 C 0.044 3.956 11 H 0.134 0.866 12 C -0.150 4.150 13 C -0.138 4.138 14 H 0.100 0.900 15 C -0.167 4.167 16 C 0.049 3.951 17 H 0.083 0.917 18 C -0.176 4.176 19 N -0.319 5.319 20 C -0.348 4.348 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.740 3.260 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.056 3.944 29 C 0.174 3.826 30 O -0.283 6.283 31 N -0.228 5.228 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.160 0.840 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -18.860 6.216 -7.829 21.345 hybrid contribution 0.456 0.523 1.035 1.246 sum -18.404 6.739 -6.794 20.743 Atomic orbital electron populations 1.20782 0.88263 1.03807 1.03416 1.21147 0.96899 0.87127 0.92327 1.21758 0.93654 0.99526 1.05914 1.20284 0.93592 0.94304 0.91565 1.20953 1.00761 0.92959 1.03524 1.21079 0.95648 0.93957 1.09593 1.17721 0.85512 0.76886 0.84774 1.90929 1.68821 1.48333 1.30897 1.46206 1.08448 1.74170 1.07416 1.21249 0.75990 0.98018 1.00331 0.86594 1.21962 0.96885 1.00096 0.96041 1.22839 0.93696 0.96574 1.00687 0.90002 1.22989 1.00397 0.96072 0.97225 1.21507 0.91022 0.92828 0.89785 0.91702 1.22615 0.99170 0.95457 1.00377 1.44617 1.75728 1.02081 1.09503 1.19047 1.35601 0.94107 0.86055 0.90585 1.24733 1.01903 0.95481 0.98170 1.69951 1.53559 0.98035 1.35453 0.86087 0.77744 0.77249 0.84968 1.20607 1.21853 1.21985 1.21287 0.99543 0.88651 0.84916 1.19037 0.86261 0.84648 0.92614 1.84678 1.76598 1.32478 1.34582 1.67047 1.09235 1.30404 1.16101 0.89999 0.90178 0.90294 0.83954 0.89771 0.90249 0.90085 0.77609 0.92037 0.92832 0.92270 0.91865 0.92331 0.93833 0.93976 0.93804 0.93492 0.73177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 36.01 0.37 -0.33 16 2 C 0.16 1.70 6.78 -82.53 -0.56 1.14 16 3 C -0.19 -1.79 9.41 -39.50 -0.37 -2.17 16 4 C 0.01 0.12 5.95 -103.93 -0.62 -0.50 16 5 C -0.13 -1.26 9.69 36.01 0.35 -0.91 16 6 C -0.20 -2.82 5.66 -104.69 -0.59 -3.42 16 7 C 0.57 9.84 5.38 -12.48 -0.07 9.78 16 8 O -0.51 -11.49 16.76 5.29 0.09 -11.40 16 9 N -0.71 -11.22 5.06 -54.84 -0.28 -11.49 16 10 C 0.15 2.71 2.08 -67.92 -0.14 2.57 16 11 H 0.12 2.82 5.40 -51.93 -0.28 2.54 16 12 C -0.11 -1.81 4.96 -26.21 -0.13 -1.93 16 13 C -0.12 -2.12 4.32 -87.93 -0.38 -2.50 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.13 -2.18 6.18 -24.29 -0.15 -2.33 16 16 C 0.16 3.16 4.29 -65.62 -0.28 2.87 16 17 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 18 C -0.13 -2.47 5.28 -26.28 -0.14 -2.61 16 19 N -0.59 -14.85 2.42 -161.38 -0.39 -15.24 16 20 C -0.22 -6.19 10.29 -15.06 -0.16 -6.35 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -27.51 10.35 55.49 0.57 -26.94 16 24 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 C 0.18 4.31 4.10 -2.83 -0.01 4.29 16 29 C 0.35 5.09 7.77 -16.61 -0.13 4.96 16 30 O -0.48 -6.77 13.01 -17.97 -0.23 -7.00 16 31 N -0.51 -6.76 10.28 -9.21 -0.09 -6.86 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 1.04 7.19 -51.93 -0.37 0.67 16 39 H 0.39 5.04 8.58 -40.82 -0.35 4.69 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.72 7.97 -51.93 -0.41 0.31 16 42 H 0.06 0.85 7.75 -51.93 -0.40 0.44 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.04 0.67 8.00 -51.93 -0.42 0.25 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 48 H 0.05 1.26 6.16 -51.93 -0.32 0.94 16 49 H 0.41 4.45 9.06 45.56 0.41 4.86 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -35.15 389.58 -9.31 -44.46 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.72 Total: 8.29 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.11 Total: 2.27 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.19 Total: -60.53 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.15 Total: -18.40 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.15 -9.31 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047124023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.060 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds