Wall clock time and date at job start Wed Apr 1 2020 04:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.40905 * 2 1 4 4 C 1.38335 * 119.46087 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82803 * 180.02562 * 4 3 2 6 6 C 1.39991 * 118.34812 * 0.02562 * 4 3 2 7 7 C 1.47526 * 120.59714 * 179.97438 * 6 4 3 8 8 O 1.21588 * 119.99409 * 90.00344 * 7 6 4 9 9 N 1.34773 * 120.00138 * 270.00090 * 7 6 4 10 10 C 1.46497 * 119.99813 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.32849 * 34.63495 * 10 9 7 12 12 C 1.53034 * 109.18107 * 154.20045 * 10 9 7 13 13 C 1.53971 * 108.82349 * 175.58356 * 12 10 9 14 14 H 1.09000 * 112.99305 * 169.00157 * 13 12 10 15 15 C 1.55429 * 106.41385 * 293.81594 * 13 12 10 16 16 C 1.55170 * 100.35290 * 73.38202 * 15 13 12 17 17 H 1.09004 * 113.04729 * 162.98899 * 16 15 13 18 18 C 1.52997 * 109.32267 * 274.99587 * 10 9 7 19 19 N 1.47789 * 104.25661 * 40.55536 * 16 15 13 20 20 C 1.36931 * 125.85717 * 153.51042 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.71991 * 20 19 16 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47082 * 108.28362 * 333.76819 * 19 16 15 29 29 C 1.40282 * 118.80268 * 0.27186 * 6 4 3 30 30 O 1.35427 * 119.79625 * 179.72531 * 29 6 4 31 31 N 1.31887 * 119.40555 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46897 * 89.99483 * 1 2 3 33 33 H 1.08997 * 109.46902 * 209.99518 * 1 2 3 34 34 H 1.08998 * 109.46898 * 330.00329 * 1 2 3 35 35 H 1.08004 * 120.27478 * 0.02562 * 3 2 1 36 36 H 1.09000 * 109.47303 * 269.97664 * 5 4 3 37 37 H 1.08997 * 109.46912 * 29.97901 * 5 4 3 38 38 H 1.09000 * 109.47170 * 149.98316 * 5 4 3 39 39 H 0.97002 * 120.00004 * 359.97438 * 9 7 6 40 40 H 1.08991 * 109.57577 * 295.38011 * 12 10 9 41 41 H 1.09000 * 109.58086 * 55.78399 * 12 10 9 42 42 H 1.09001 * 111.24014 * 315.60176 * 15 13 12 43 43 H 1.09005 * 111.23535 * 191.15841 * 15 13 12 44 44 H 1.09001 * 109.53075 * 64.93495 * 18 10 9 45 45 H 1.09005 * 109.52881 * 304.71392 * 18 10 9 46 46 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.97587 * 120.22697 * 28 19 16 48 48 H 1.08998 * 109.97931 * 241.50889 * 28 19 16 49 49 H 0.96698 * 113.99849 * 90.00478 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.3408 2.5012 0.0011 6 6 4.2356 -0.0250 0.0005 7 6 5.7098 -0.0815 0.0005 8 8 6.3171 -0.1049 1.0535 9 7 6.3831 -0.1073 -1.1666 10 6 7.8470 -0.1641 -1.1666 11 1 8.1848 -0.7623 -0.3205 12 6 8.3252 -0.8118 -2.4680 13 6 9.8637 -0.7667 -2.5094 14 1 10.2861 -1.3747 -3.3094 15 6 10.2566 0.7338 -2.6084 16 6 9.9416 1.2006 -1.1625 17 1 10.4111 2.1511 -0.9091 18 6 8.4086 1.2535 -1.0404 19 7 10.4175 0.0910 -0.3101 20 6 10.8323 0.1997 0.9904 21 1 10.8288 1.1625 1.4797 22 6 11.2515 -0.9288 1.6817 23 7 11.2552 -2.1021 1.0855 24 14 11.8101 -0.7818 3.4582 25 1 11.7123 0.6350 3.8922 26 1 10.9442 -1.6252 4.3207 27 1 13.2185 -1.2383 3.5735 28 6 10.3749 -1.1488 -1.1001 29 6 3.4757 -1.2042 -0.0059 30 8 4.0991 -2.4064 -0.0117 31 7 2.1546 -1.1490 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5138 35 1 1.6412 2.1376 0.0004 36 1 4.5275 2.8134 -1.0264 37 1 3.7617 3.2687 0.5146 38 1 5.2911 2.3580 0.5156 39 1 5.8985 -0.0891 -2.0067 40 1 7.9890 -1.8479 -2.5052 41 1 7.9207 -0.2637 -3.3190 42 1 9.6365 1.2572 -3.3362 43 1 11.3156 0.8502 -2.8390 44 1 8.1343 1.6692 -0.0709 45 1 8.0010 1.8789 -1.8348 46 1 11.5485 -2.8906 1.5685 47 1 11.3731 -1.5812 -1.1686 48 1 9.6911 -1.8612 -0.6386 49 1 4.2796 -2.7601 0.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047124023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:59 Heat of formation + Delta-G solvation = -41.469761 kcal Electronic energy + Delta-G solvation = -31652.155105 eV Core-core repulsion = 27578.821539 eV Total energy + Delta-G solvation = -4073.333565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.13221 -41.29695 -39.83467 -38.46115 -36.13542 -35.29390 -34.66627 -32.85177 -32.36507 -31.40392 -30.16239 -29.06153 -28.36569 -27.21051 -24.95665 -24.70707 -23.42815 -22.44536 -21.54957 -21.19333 -20.26574 -19.54972 -18.99735 -18.67312 -18.25105 -17.55476 -16.70437 -16.64163 -16.33930 -15.85390 -15.44072 -15.32598 -15.13224 -15.03193 -14.56556 -14.22555 -14.17012 -14.02549 -13.94342 -13.79486 -13.46715 -13.35780 -13.26868 -13.22237 -13.03442 -12.98094 -12.86303 -12.66133 -12.65007 -12.51704 -12.15654 -11.88608 -11.65699 -11.56250 -11.20074 -11.15916 -10.94576 -10.69114 -10.63813 -10.48052 -10.05219 -9.88407 -8.82497 -7.82813 -5.14359 -0.32099 0.00643 1.38277 1.41517 1.44617 1.49710 2.08909 2.24554 2.48579 2.63378 3.35553 3.39856 3.53292 3.61562 3.66533 3.80873 3.91224 3.97866 4.09883 4.17500 4.27848 4.37510 4.41986 4.50311 4.51946 4.55907 4.59501 4.64190 4.66489 4.77725 4.81962 4.82610 4.95064 4.99958 5.08882 5.11838 5.17493 5.19650 5.28475 5.34297 5.37141 5.48004 5.50535 5.50873 5.62093 5.73565 5.84491 6.23564 6.33393 6.48795 6.77106 7.14484 7.19073 7.83312 8.47380 9.27424 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003341 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.068458 B = 8378.189070 C = 9072.651555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.159 3.841 3 C -0.172 4.172 4 C 0.008 3.992 5 C -0.122 4.122 6 C -0.219 4.219 7 C 0.573 3.427 8 O -0.579 6.579 9 N -0.697 5.697 10 C 0.154 3.846 11 H 0.047 0.953 12 C -0.102 4.102 13 C -0.107 4.107 14 H 0.109 0.891 15 C -0.110 4.110 16 C 0.141 3.859 17 H 0.066 0.934 18 C -0.121 4.121 19 N -0.614 5.614 20 C -0.224 4.224 21 H 0.073 0.927 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.301 1.301 27 H -0.288 1.288 28 C 0.190 3.810 29 C 0.337 3.663 30 O -0.493 6.493 31 N -0.528 5.528 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.188 0.812 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.410 0.590 40 H 0.058 0.942 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.090 0.910 46 H 0.242 0.758 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.941 10.174 -11.038 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.022 3.978 3 C -0.192 4.192 4 C 0.000 4.000 5 C -0.179 4.179 6 C -0.225 4.225 7 C 0.358 3.642 8 O -0.458 6.458 9 N -0.347 5.347 10 C 0.050 3.950 11 H 0.066 0.934 12 C -0.140 4.140 13 C -0.126 4.126 14 H 0.127 0.873 15 C -0.148 4.148 16 C 0.034 3.966 17 H 0.084 0.916 18 C -0.162 4.162 19 N -0.338 5.338 20 C -0.354 4.354 21 H 0.091 0.909 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.795 3.205 25 H -0.192 1.192 26 H -0.229 1.229 27 H -0.214 1.214 28 C 0.065 3.935 29 C 0.158 3.842 30 O -0.302 6.302 31 N -0.249 5.249 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.205 0.795 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -21.844 9.276 -10.711 26.037 hybrid contribution 1.247 -0.356 1.936 2.330 sum -20.597 8.920 -8.775 24.100 Atomic orbital electron populations 1.20935 0.85259 1.05044 1.04790 1.21954 0.98800 0.86699 0.90371 1.22185 0.92559 1.00959 1.03465 1.20581 0.94795 0.93661 0.90942 1.20993 0.99225 0.92931 1.04705 1.20871 0.93399 0.95521 1.12748 1.18179 0.86860 0.75112 0.84003 1.90891 1.70546 1.51207 1.33150 1.45990 1.07451 1.73201 1.08047 1.20893 0.77463 0.97279 0.99341 0.93436 1.21910 0.95428 1.00579 0.96060 1.22783 0.94917 0.97909 0.97033 0.87292 1.22949 1.01532 0.94841 0.95495 1.21883 0.91904 0.91495 0.91295 0.91575 1.22427 0.97871 0.95743 1.00112 1.44845 1.75556 1.04200 1.09180 1.19352 1.34203 0.93838 0.88009 0.90890 1.25494 1.03270 0.95473 1.01851 1.70177 1.55010 0.98317 1.36416 0.85176 0.77079 0.77505 0.80700 1.19241 1.22883 1.21442 1.21009 0.96349 0.87719 0.88461 1.19144 0.86908 0.84380 0.93747 1.84624 1.76967 1.33083 1.35541 1.67129 1.08488 1.32169 1.17117 0.88332 0.90769 0.87274 0.79527 0.87699 0.87300 0.93728 0.75361 0.92306 0.87802 0.87408 0.91793 0.95882 0.89195 0.94878 0.97996 0.97964 0.72367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.16 71.24 0.72 -0.25 16 2 C 0.16 2.88 6.78 42.58 0.29 3.17 16 3 C -0.17 -2.62 9.41 22.32 0.21 -2.41 16 4 C 0.01 0.17 5.95 -19.42 -0.12 0.06 16 5 C -0.12 -2.16 9.69 71.24 0.69 -1.47 16 6 C -0.22 -6.33 5.66 -19.91 -0.11 -6.44 16 7 C 0.57 20.77 5.38 86.69 0.47 21.24 16 8 O -0.58 -28.04 16.76 -3.99 -0.07 -28.10 16 9 N -0.70 -21.88 5.06 -445.68 -2.25 -24.13 16 10 C 0.15 5.75 2.08 45.00 0.09 5.85 16 11 H 0.05 2.49 5.40 -2.39 -0.01 2.48 16 12 C -0.10 -3.07 4.96 30.93 0.15 -2.91 16 13 C -0.11 -3.67 4.32 -9.05 -0.04 -3.71 16 14 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 15 C -0.11 -3.36 6.18 32.17 0.20 -3.16 16 16 C 0.14 5.58 4.29 45.78 0.20 5.77 16 17 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 18 C -0.12 -4.33 5.28 30.89 0.16 -4.17 16 19 N -0.61 -32.02 2.42 -664.47 -1.61 -33.63 16 20 C -0.22 -13.33 10.29 84.04 0.87 -12.47 16 21 H 0.07 4.25 7.83 -2.91 -0.02 4.22 16 22 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 23 N -0.95 -60.68 10.35 21.65 0.22 -60.46 16 24 Si 0.97 49.85 29.55 68.60 2.03 51.88 16 25 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 26 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 28 C 0.19 9.53 4.10 86.85 0.36 9.89 16 29 C 0.34 9.86 7.77 85.13 0.66 10.52 16 30 O -0.49 -14.93 13.01 -87.23 -1.14 -16.06 16 31 N -0.53 -13.63 10.28 -296.06 -3.04 -16.67 16 32 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.40 8.07 -2.39 -0.02 0.39 16 35 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.04 1.14 7.19 -2.39 -0.02 1.12 16 39 H 0.41 9.75 8.58 -92.71 -0.80 8.95 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 2.19 7.97 -2.39 -0.02 2.17 16 42 H 0.11 2.35 7.75 -2.39 -0.02 2.33 16 43 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 2.40 8.00 -2.38 -0.02 2.38 16 46 H 0.24 15.14 8.31 -92.70 -0.77 14.37 16 47 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 48 H 0.00 0.13 6.16 -2.39 -0.01 0.12 16 49 H 0.42 10.25 9.06 -74.06 -0.67 9.58 16 Total: -1.00 -87.77 389.58 -1.07 -88.84 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.48 Total: 22.56 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.27 Total: 15.78 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -6.68 Total: -134.89 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.20 Total: -44.16 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.88 kcal Total: -87.77 -1.07 -88.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047124023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.367 kcal (2) G-P(sol) polarization free energy of solvation -87.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds