Wall clock time and date at job start Wed Apr 1 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38356 * 119.40345 * 2 1 4 4 C 1.38343 * 119.45276 * 179.78991 * 3 2 1 5 5 C 1.50699 * 120.82279 * 180.22848 * 4 3 2 6 6 C 1.39986 * 118.34920 * 0.47301 * 4 3 2 7 7 C 1.47532 * 120.59513 * 179.72894 * 6 4 3 8 8 O 1.21591 * 119.99673 * 263.90988 * 7 6 4 9 9 N 1.34771 * 119.99916 * 83.90440 * 7 6 4 10 10 C 1.46498 * 119.99592 * 185.05471 * 9 7 6 11 11 H 1.08992 * 109.32709 * 49.74313 * 10 9 7 12 12 C 1.53029 * 109.32765 * 290.26826 * 10 9 7 13 13 C 1.53968 * 108.83252 * 295.14515 * 12 10 9 14 14 H 1.09000 * 113.67824 * 168.55930 * 13 12 10 15 15 C 1.55427 * 106.41581 * 293.82335 * 13 12 10 16 16 C 1.55174 * 100.35482 * 73.37163 * 15 13 12 17 17 H 1.09002 * 113.05169 * 162.99115 * 16 15 13 18 18 C 1.52989 * 109.32360 * 169.38342 * 10 9 7 19 19 N 1.47786 * 104.25314 * 40.55232 * 16 15 13 20 20 C 1.36936 * 125.85817 * 153.51587 * 19 16 15 21 21 H 1.08005 * 119.99849 * 9.01217 * 20 19 16 22 22 C 1.38808 * 120.00329 * 189.00499 * 20 19 16 23 23 N 1.31621 * 119.99872 * 10.73573 * 22 20 19 24 24 Si 1.86800 * 120.00195 * 190.73874 * 22 20 19 25 25 H 1.48494 * 109.47264 * 64.99473 * 24 22 20 26 26 H 1.48505 * 109.47321 * 184.99331 * 24 22 20 27 27 H 1.48496 * 109.47121 * 304.99221 * 24 22 20 28 28 C 1.47083 * 108.28745 * 333.53719 * 19 16 15 29 29 C 1.40270 * 118.80752 * 359.75277 * 6 4 3 30 30 O 1.35429 * 119.79928 * 179.97438 * 29 6 4 31 31 N 1.31881 * 119.40722 * 180.27183 * 2 1 3 32 32 H 1.09003 * 109.47110 * 269.72442 * 1 2 3 33 33 H 1.08998 * 109.47281 * 29.72970 * 1 2 3 34 34 H 1.09004 * 109.47255 * 149.72555 * 1 2 3 35 35 H 1.07998 * 120.27323 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.46973 * 274.36185 * 5 4 3 37 37 H 1.09006 * 109.47483 * 34.35606 * 5 4 3 38 38 H 1.09000 * 109.47083 * 154.36317 * 5 4 3 39 39 H 0.96995 * 120.00332 * 5.06100 * 9 7 6 40 40 H 1.09000 * 109.57896 * 54.95131 * 12 10 9 41 41 H 1.09001 * 109.57987 * 175.34419 * 12 10 9 42 42 H 1.09004 * 111.23441 * 315.59833 * 15 13 12 43 43 H 1.09000 * 111.23888 * 191.14577 * 15 13 12 44 44 H 1.09005 * 109.53717 * 185.06510 * 18 10 9 45 45 H 1.09006 * 109.53367 * 305.21382 * 18 10 9 46 46 H 0.97007 * 120.00167 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.97837 * 120.46116 * 28 19 16 48 48 H 1.09007 * 109.97825 * 241.73786 * 28 19 16 49 49 H 0.96701 * 114.00114 * 270.01865 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0044 5 6 4.3407 2.5013 0.0097 6 6 4.2355 -0.0248 -0.0014 7 6 5.7097 -0.0814 -0.0031 8 8 6.3119 -0.2119 -1.0513 9 7 6.3889 0.0118 1.1572 10 6 7.8528 0.0672 1.1465 11 1 8.1799 0.8253 0.4351 12 6 8.4081 -1.2940 0.7217 13 6 8.0353 -2.3383 1.7899 14 1 8.2167 -3.3670 1.4786 15 6 8.8091 -1.9436 3.0788 16 6 7.9960 -0.6984 3.5220 17 1 8.1727 -0.4209 4.5612 18 6 8.3558 0.4340 2.5441 19 7 6.5891 -1.0737 3.2693 20 6 5.4956 -0.5755 3.9260 21 1 5.6056 0.2606 4.6008 22 6 4.2459 -1.1449 3.7244 23 7 4.1391 -2.2849 3.0754 24 14 2.7156 -0.2931 4.3742 25 1 2.5334 1.0019 3.6708 26 1 1.5304 -1.1561 4.1374 27 1 2.8663 -0.0481 5.8311 28 6 6.5648 -2.0746 2.1918 29 6 3.4758 -1.2040 -0.0061 30 8 4.0992 -2.4062 -0.0123 31 7 2.1545 -1.1489 -0.0055 32 1 -0.3633 -0.0049 1.0277 33 1 -0.3634 0.8924 -0.5096 34 1 -0.3634 -0.8875 -0.5181 35 1 1.6410 2.1376 0.0004 36 1 4.4627 2.8557 -1.0138 37 1 3.7958 3.2464 0.5896 38 1 5.3212 2.3385 0.4571 39 1 5.9086 0.0421 1.9993 40 1 7.9760 -1.5817 -0.2368 41 1 9.4928 -1.2343 0.6323 42 1 9.8427 -1.6805 2.8539 43 1 8.7591 -2.7345 3.8272 44 1 9.4377 0.5643 2.5195 45 1 7.8843 1.3614 2.8693 46 1 3.2657 -2.6830 2.9348 47 1 6.1056 -2.9961 2.5498 48 1 6.0087 -1.6886 1.3374 49 1 4.2796 -2.7512 -0.8975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047124024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:05 Heat of formation + Delta-G solvation = 35.283897 kcal Electronic energy + Delta-G solvation = -34246.203074 eV Core-core repulsion = 30176.197797 eV Total energy + Delta-G solvation = -4070.005277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.93254 -39.94580 -37.69671 -36.73562 -33.89989 -33.56938 -33.03981 -31.38146 -30.67818 -30.32551 -28.37438 -27.57722 -27.03675 -25.16836 -23.11633 -23.08105 -21.88816 -21.04005 -19.75418 -19.51098 -18.69931 -17.84770 -17.33077 -16.78818 -16.55986 -15.49844 -15.24377 -14.86028 -14.50197 -14.27541 -13.80564 -13.76116 -13.55893 -13.24623 -13.14623 -12.72421 -12.69031 -12.47957 -12.28550 -12.19845 -12.18599 -11.84582 -11.72361 -11.63803 -11.60582 -11.50538 -11.38958 -11.07125 -10.90170 -10.81626 -10.55803 -10.12064 -9.78806 -9.70127 -9.57620 -9.48907 -9.27050 -9.14394 -8.82595 -8.70356 -8.29991 -7.48229 -6.80471 -5.70851 -3.16632 1.27791 1.53442 3.26348 3.30927 3.36980 3.41197 3.80952 3.96796 4.24461 4.41055 4.80613 4.87144 5.26447 5.27572 5.32021 5.33891 5.41455 5.50034 5.53038 5.54791 5.66513 5.67438 5.72013 5.75922 5.85166 5.88946 5.96656 5.98544 6.05942 6.14804 6.18894 6.21160 6.28697 6.32090 6.32928 6.44170 6.50835 6.65448 6.77225 6.84186 6.86687 6.94538 7.00002 7.42831 7.59991 7.77293 7.93447 8.03342 8.27231 8.35500 8.58926 9.08931 9.22086 9.73470 10.42078 11.28615 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.006402 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.723096 B = 4372.472192 C = 5244.110189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.158 3.842 3 C -0.198 4.198 4 C 0.002 3.998 5 C -0.119 4.119 6 C -0.186 4.186 7 C 0.565 3.435 8 O -0.570 6.570 9 N -0.678 5.678 10 C 0.160 3.840 11 H 0.059 0.941 12 C -0.123 4.123 13 C -0.119 4.119 14 H 0.074 0.926 15 C -0.127 4.127 16 C 0.149 3.851 17 H 0.065 0.935 18 C -0.141 4.141 19 N -0.591 5.591 20 C -0.275 4.275 21 H 0.076 0.924 22 C 0.015 3.985 23 N -0.869 5.869 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.287 1.287 27 H -0.283 1.283 28 C 0.136 3.864 29 C 0.385 3.615 30 O -0.446 6.446 31 N -0.507 5.507 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.440 0.560 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.258 0.742 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 6.402 -6.118 8.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.020 3.980 3 C -0.218 4.218 4 C -0.006 4.006 5 C -0.175 4.175 6 C -0.193 4.193 7 C 0.349 3.651 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.054 3.946 11 H 0.077 0.923 12 C -0.161 4.161 13 C -0.138 4.138 14 H 0.092 0.908 15 C -0.165 4.165 16 C 0.041 3.959 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.318 5.318 20 C -0.403 4.403 21 H 0.094 0.906 22 C -0.187 4.187 23 N -0.510 5.510 24 Si 0.713 3.287 25 H -0.209 1.209 26 H -0.213 1.213 27 H -0.209 1.209 28 C 0.012 3.988 29 C 0.205 3.795 30 O -0.250 6.250 31 N -0.228 5.228 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.297 0.703 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.507 5.487 -6.123 8.237 hybrid contribution -0.532 0.918 0.501 1.173 sum -0.024 6.404 -5.622 8.522 Atomic orbital electron populations 1.20733 0.88962 1.03199 1.03149 1.21006 0.96579 0.87441 0.93024 1.21584 0.93737 0.99186 1.07337 1.20143 0.93593 0.94246 0.92615 1.20866 1.00370 0.93509 1.02803 1.20884 0.95531 0.93892 1.08959 1.17758 0.85956 0.76872 0.84508 1.90684 1.69790 1.52251 1.32478 1.47788 1.06962 1.68586 1.11136 1.20650 0.80889 0.96593 0.96418 0.92288 1.22066 0.99154 0.95385 0.99519 1.22798 0.99518 0.97114 0.94378 0.90794 1.22966 0.97263 0.98545 0.97773 1.21606 0.86415 0.92223 0.95661 0.91706 1.22537 0.99468 1.00537 0.95564 1.44967 0.99603 1.47583 1.39626 1.18891 0.84973 1.11981 1.24444 0.90597 1.24833 0.97331 0.96413 1.00124 1.69918 1.23243 1.15654 1.42214 0.86624 0.83996 0.79144 0.78904 1.20923 1.21297 1.20879 1.22241 0.90264 0.94040 0.92270 1.18867 0.85864 0.84706 0.90047 1.85007 1.76293 1.32107 1.31632 1.67001 1.09692 1.29895 1.16193 0.90420 0.90719 0.90407 0.84685 0.90301 0.90573 0.90819 0.70258 0.91025 0.92613 0.92377 0.92181 0.91806 0.92150 0.93085 0.92437 0.90424 0.75490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.16 36.01 0.37 -0.95 16 2 C 0.16 2.71 6.78 -82.53 -0.56 2.15 16 3 C -0.20 -3.19 9.43 -39.50 -0.37 -3.56 16 4 C 0.00 0.04 5.95 -103.93 -0.62 -0.58 16 5 C -0.12 -1.74 9.75 36.00 0.35 -1.39 16 6 C -0.19 -3.82 5.66 -104.69 -0.59 -4.41 16 7 C 0.56 11.91 3.75 -12.47 -0.05 11.87 16 8 O -0.57 -12.75 15.68 5.29 0.08 -12.67 16 9 N -0.68 -14.07 2.62 -54.85 -0.14 -14.21 16 10 C 0.16 2.94 2.73 -67.92 -0.19 2.76 16 11 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 12 C -0.12 -2.21 5.15 -26.21 -0.13 -2.35 16 13 C -0.12 -2.29 4.33 -87.93 -0.38 -2.67 16 14 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.13 -2.24 6.18 -24.29 -0.15 -2.39 16 16 C 0.15 2.86 4.30 -65.61 -0.28 2.58 16 17 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.14 -2.38 5.42 -26.28 -0.14 -2.52 16 19 N -0.59 -13.62 1.76 -161.37 -0.28 -13.90 16 20 C -0.28 -6.99 8.43 -15.06 -0.13 -7.12 16 21 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 22 C 0.02 0.40 5.38 -17.43 -0.09 0.31 16 23 N -0.87 -23.69 10.63 55.49 0.59 -23.10 16 24 Si 0.88 21.32 29.57 -169.99 -5.03 16.29 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.14 3.14 4.07 -2.82 -0.01 3.13 16 29 C 0.38 8.05 7.77 -16.61 -0.13 7.92 16 30 O -0.45 -9.21 11.96 -17.98 -0.21 -9.42 16 31 N -0.51 -10.18 10.28 -9.21 -0.09 -10.27 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.07 1.18 6.93 -51.93 -0.36 0.82 16 39 H 0.44 10.00 3.87 -40.82 -0.16 9.84 16 40 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 41 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 42 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.06 1.57 6.69 -51.93 -0.35 1.22 16 48 H 0.08 1.84 2.88 -58.40 -0.17 1.67 16 49 H 0.39 6.13 9.06 45.56 0.41 6.54 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -30.96 374.35 -8.95 -39.91 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -6.39 Total: 18.98 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -3.11 Total: 2.76 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.07 Total: -61.49 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.13 Total: -22.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.96 -8.95 -39.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047124024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.195 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds