Wall clock time and date at job start Wed Apr 1 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37999 * 120.82099 * 2 1 4 4 C 1.39123 * 119.26357 * 180.27010 * 3 2 1 5 5 O 1.35500 * 119.52355 * 179.72353 * 4 3 2 6 6 N 1.32437 * 120.94871 * 359.70133 * 4 3 2 7 7 C 1.31629 * 121.80109 * 0.02562 * 6 4 3 8 8 C 1.39567 * 120.63005 * 359.97438 * 7 6 4 9 9 C 1.47608 * 120.50296 * 179.97438 * 8 7 6 10 10 O 1.21582 * 120.00096 * 172.34483 * 9 8 7 11 11 N 1.34781 * 120.00127 * 352.34432 * 9 8 7 12 12 C 1.46501 * 120.00129 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.46964 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.44105 * 300.05025 * 13 12 11 15 15 C 1.53146 * 109.43762 * 59.96231 * 13 12 11 16 16 C 1.53703 * 108.87535 * 66.17523 * 15 13 12 17 17 H 1.09001 * 112.09868 * 187.61833 * 16 15 13 18 18 C 1.54605 * 107.83179 * 312.22748 * 16 15 13 19 19 C 1.54822 * 104.65164 * 88.55373 * 18 16 15 20 20 C 1.54610 * 104.65378 * 359.97438 * 19 18 16 21 21 H 1.08998 * 112.69176 * 147.18768 * 20 19 18 22 22 C 1.53144 * 109.43593 * 180.18657 * 13 12 11 23 23 N 1.48290 * 107.27720 * 64.01109 * 16 15 13 24 24 C 1.36932 * 128.21267 * 107.39683 * 23 16 15 25 25 H 1.08003 * 119.99946 * 156.19749 * 24 23 16 26 26 C 1.38808 * 120.00047 * 336.19264 * 24 23 16 27 27 N 1.31620 * 119.99900 * 354.59298 * 26 24 23 28 28 Si 1.86805 * 120.00068 * 174.59069 * 26 24 23 29 29 H 1.48499 * 109.47071 * 180.02562 * 28 26 24 30 30 H 1.48503 * 109.47108 * 299.99899 * 28 26 24 31 31 H 1.48498 * 109.47051 * 60.00313 * 28 26 24 32 32 H 1.09001 * 109.47541 * 271.13204 * 1 2 3 33 33 H 1.09000 * 109.47140 * 31.13778 * 1 2 3 34 34 H 1.09005 * 109.47128 * 151.13088 * 1 2 3 35 35 H 1.07997 * 120.37017 * 359.97438 * 3 2 1 36 36 H 0.96700 * 113.99752 * 269.98060 * 5 4 3 37 37 H 1.08004 * 119.68750 * 179.97438 * 7 6 4 38 38 H 0.97001 * 120.00082 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.46620 * 60.00353 * 12 11 9 40 40 H 1.09001 * 109.47480 * 300.00340 * 12 11 9 41 41 H 1.08995 * 109.57202 * 306.35885 * 15 13 12 42 42 H 1.08996 * 109.66964 * 186.04963 * 15 13 12 43 43 H 1.09006 * 110.38232 * 207.48272 * 18 16 15 44 44 H 1.09004 * 110.38459 * 329.84806 * 18 16 15 45 45 H 1.09002 * 110.33204 * 241.26263 * 19 18 16 46 46 H 1.08994 * 110.52796 * 118.83689 * 19 18 16 47 47 H 1.09004 * 109.57267 * 53.63996 * 22 13 12 48 48 H 1.09004 * 109.57367 * 173.88664 * 22 13 12 49 49 H 0.97004 * 120.00035 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0057 5 8 4.3042 2.3078 -0.0114 6 7 4.2547 -0.0066 -0.0052 7 6 3.6204 -1.1600 0.0002 8 6 2.2255 -1.2044 0.0061 9 6 1.5171 -2.4994 0.0116 10 8 0.3104 -2.5316 0.1570 11 7 2.2079 -3.6461 -0.1446 12 6 1.5049 -4.9314 -0.1387 13 6 2.5136 -6.0652 -0.3324 14 1 3.0271 -5.9352 -1.2851 15 6 3.5374 -6.0367 0.8062 16 6 2.8236 -6.3728 2.1253 17 1 3.4740 -6.2379 2.9895 18 6 1.5421 -5.5114 2.2030 19 6 0.4564 -6.3599 1.4971 20 6 1.1896 -7.6497 1.0621 21 1 0.5442 -8.5279 1.0835 22 6 1.7774 -7.4081 -0.3307 23 7 2.3224 -7.7639 2.0128 24 6 2.7970 -8.8881 2.6342 25 1 2.1481 -9.7390 2.7803 26 6 4.1120 -8.9340 3.0761 27 7 4.9326 -7.9414 2.8046 28 14 4.7171 -10.4047 4.0563 29 1 6.1470 -10.2112 4.4072 30 1 3.9160 -10.5341 5.3000 31 1 4.5692 -11.6373 3.2415 32 1 -0.3634 0.0203 1.0274 33 1 -0.3633 0.8796 -0.5314 34 1 -0.3634 -0.9000 -0.4962 35 1 1.6936 2.1314 -0.0004 36 1 4.5038 2.6423 -0.8965 37 1 4.1848 -2.0808 0.0000 38 1 3.1707 -3.6204 -0.2603 39 1 0.7761 -4.9506 -0.9490 40 1 0.9921 -5.0607 0.8144 41 1 3.9806 -5.0432 0.8739 42 1 4.3184 -6.7727 0.6159 43 1 1.2692 -5.3298 3.2426 44 1 1.6866 -4.5676 1.6771 45 1 0.0697 -5.8313 0.6258 46 1 -0.3524 -6.5972 2.1880 47 1 0.9747 -7.3854 -1.0678 48 1 2.4761 -8.2079 -0.5762 49 1 5.8517 -7.9737 3.1131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048562411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:05 Heat of formation + Delta-G solvation = 83.441586 kcal Electronic energy + Delta-G solvation = -31623.317827 eV Core-core repulsion = 27555.400824 eV Total energy + Delta-G solvation = -4067.917003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.45692 -40.78577 -38.97081 -37.23154 -35.03935 -33.88610 -32.96232 -31.53842 -31.00655 -30.19035 -29.84283 -28.19350 -26.54267 -24.55862 -23.56050 -23.26305 -22.42844 -20.95724 -20.62961 -19.46488 -18.86856 -18.69512 -17.81867 -17.37796 -16.97410 -16.16476 -15.90915 -15.45936 -14.95677 -14.81472 -14.60563 -14.18421 -13.80270 -13.46953 -13.20465 -13.01211 -12.91857 -12.83705 -12.78559 -12.60956 -12.53145 -12.01503 -11.95349 -11.66781 -11.47737 -11.41481 -11.24074 -10.83618 -10.75768 -10.58253 -10.21573 -10.06678 -9.84991 -9.78006 -9.64983 -9.53150 -9.41277 -9.33776 -9.26899 -9.21980 -8.57559 -8.16073 -6.71618 -5.81070 -3.18756 0.31295 0.87704 2.68728 3.21125 3.27653 3.37477 3.42921 3.43233 3.56309 4.23883 4.41073 4.45473 4.53660 4.79480 4.92706 5.20343 5.21788 5.27062 5.35119 5.43909 5.48771 5.49368 5.55052 5.59351 5.73092 5.77470 5.82107 5.91037 6.04921 6.08197 6.08537 6.14084 6.24690 6.26835 6.40558 6.47176 6.56471 6.62552 6.68763 6.76247 6.83491 6.93562 7.07219 7.09584 7.12510 7.52430 7.54157 7.56332 7.64408 7.75266 8.24794 8.25901 9.12219 9.73453 10.57380 11.32527 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.002869 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.820476 B = 9756.667332 C =10746.261982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 C -0.200 4.200 4 C 0.332 3.668 5 O -0.481 6.481 6 N -0.510 5.510 7 C 0.166 3.834 8 C -0.200 4.200 9 C 0.558 3.442 10 O -0.535 6.535 11 N -0.711 5.711 12 C 0.003 3.997 13 C -0.088 4.088 14 H 0.051 0.949 15 C -0.112 4.112 16 C 0.188 3.812 17 H 0.096 0.904 18 C -0.174 4.174 19 C -0.160 4.160 20 C 0.147 3.853 21 H 0.066 0.934 22 C -0.120 4.120 23 N -0.582 5.582 24 C -0.228 4.228 25 H 0.070 0.930 26 C 0.002 3.998 27 N -0.907 5.907 28 Si 0.908 3.092 29 H -0.291 1.291 30 H -0.285 1.285 31 H -0.284 1.284 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.146 0.854 36 H 0.403 0.597 37 H 0.166 0.834 38 H 0.394 0.606 39 H 0.049 0.951 40 H 0.196 0.804 41 H 0.033 0.967 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 16.516 -9.336 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.025 3.975 3 C -0.221 4.221 4 C 0.154 3.846 5 O -0.289 6.289 6 N -0.229 5.229 7 C 0.007 3.993 8 C -0.206 4.206 9 C 0.345 3.655 10 O -0.414 6.414 11 N -0.362 5.362 12 C -0.115 4.115 13 C -0.107 4.107 14 H 0.069 0.931 15 C -0.151 4.151 16 C 0.081 3.919 17 H 0.114 0.886 18 C -0.213 4.213 19 C -0.198 4.198 20 C 0.039 3.961 21 H 0.084 0.916 22 C -0.160 4.160 23 N -0.303 5.303 24 C -0.357 4.357 25 H 0.088 0.912 26 C -0.196 4.196 27 N -0.552 5.552 28 Si 0.738 3.262 29 H -0.217 1.217 30 H -0.212 1.212 31 H -0.211 1.211 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.164 0.836 36 H 0.262 0.738 37 H 0.183 0.817 38 H 0.230 0.770 39 H 0.067 0.933 40 H 0.211 0.789 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.483 16.362 -8.519 19.245 hybrid contribution 0.461 -0.564 -0.283 0.782 sum -5.022 15.798 -8.802 18.769 Atomic orbital electron populations 1.21249 0.88713 1.04791 1.04007 1.20375 0.97722 0.90568 0.88800 1.21977 0.93688 0.99598 1.06823 1.19375 0.87098 0.85234 0.92897 1.84725 1.76030 1.34137 1.33997 1.67171 1.42020 0.98229 1.15456 1.22796 0.90418 0.95305 0.90798 1.20991 0.95059 0.94918 1.09583 1.17817 0.86942 0.83286 0.77459 1.90686 1.13613 1.86883 1.50216 1.46301 1.11254 1.06579 1.72027 1.25284 0.96324 0.80357 1.09536 1.21284 0.96399 0.94053 0.98950 0.93090 1.22094 0.97698 0.99553 0.95741 1.21255 0.91125 0.83204 0.96330 0.88633 1.23643 0.98535 0.99650 0.99435 1.23444 0.98105 0.98135 1.00121 1.21457 0.90782 0.94738 0.89121 0.91557 1.22009 0.99105 0.96287 0.98577 1.45085 1.34129 1.03260 1.47797 1.18875 0.93134 0.92862 1.30814 0.91213 1.24998 0.95503 0.97870 1.01241 1.69867 1.05064 1.31590 1.48704 0.86288 0.77645 0.82319 0.79959 1.21658 1.21164 1.21094 0.89753 0.91773 0.87253 0.83647 0.73848 0.81727 0.76997 0.93284 0.78852 0.94796 0.89840 0.93102 0.89052 0.89238 0.92600 0.93678 0.91542 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.09 36.00 0.33 -0.97 16 2 C 0.03 0.37 5.95 -103.96 -0.62 -0.25 16 3 C -0.20 -1.90 9.73 -39.34 -0.38 -2.28 16 4 C 0.33 3.57 7.74 -16.96 -0.13 3.43 16 5 O -0.48 -4.26 13.55 -18.19 -0.25 -4.50 16 6 N -0.51 -6.30 10.37 -12.96 -0.13 -6.43 16 7 C 0.17 1.91 10.68 -17.14 -0.18 1.73 16 8 C -0.20 -2.42 5.89 -104.82 -0.62 -3.03 16 9 C 0.56 7.69 7.45 -12.44 -0.09 7.60 16 10 O -0.53 -8.48 13.40 5.29 0.07 -8.41 16 11 N -0.71 -9.42 4.33 -61.33 -0.27 -9.69 16 12 C 0.00 0.05 2.68 -4.05 -0.01 0.04 16 13 C -0.09 -1.44 2.76 -90.47 -0.25 -1.69 16 14 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.11 -2.16 5.11 -26.29 -0.13 -2.29 16 16 C 0.19 4.08 3.10 -65.74 -0.20 3.88 16 17 H 0.10 2.42 6.81 -51.93 -0.35 2.07 16 18 C -0.17 -3.21 5.74 -24.93 -0.14 -3.36 16 19 C -0.16 -2.75 5.75 -24.92 -0.14 -2.90 16 20 C 0.15 2.86 4.29 -66.03 -0.28 2.57 16 21 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 22 C -0.12 -2.10 5.35 -26.61 -0.14 -2.24 16 23 N -0.58 -13.72 2.80 -153.09 -0.43 -14.15 16 24 C -0.23 -6.03 10.35 -15.06 -0.16 -6.19 16 25 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 26 C 0.00 0.05 5.43 -17.43 -0.09 -0.04 16 27 N -0.91 -24.78 10.33 55.49 0.57 -24.20 16 28 Si 0.91 21.31 29.56 -169.99 -5.02 16.29 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.11 1.30 5.49 -51.93 -0.28 1.01 16 35 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.40 1.40 9.06 45.56 0.41 1.81 16 37 H 0.17 1.59 6.48 -52.48 -0.34 1.25 16 38 H 0.39 4.61 5.42 -40.82 -0.22 4.39 16 39 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 40 H 0.20 3.13 1.12 -165.83 -0.19 2.94 16 41 H 0.03 0.58 6.71 -51.93 -0.35 0.23 16 42 H 0.08 1.93 7.46 -51.93 -0.39 1.54 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 1.56 3.94 -51.93 -0.20 1.35 16 45 H 0.09 1.40 4.83 -51.93 -0.25 1.15 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -31.07 367.37 -9.11 -40.17 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.93 Total: 11.39 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.26 Total: -6.00 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.26 Total: -54.47 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.18 Total: -12.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.07 -9.11 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048562411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.616 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds