Wall clock time and date at job start Wed Apr 1 2020 04:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37999 * 120.82099 * 2 1 4 4 C 1.39123 * 119.26357 * 180.27010 * 3 2 1 5 5 O 1.35500 * 119.52355 * 179.72353 * 4 3 2 6 6 N 1.32437 * 120.94871 * 359.70133 * 4 3 2 7 7 C 1.31629 * 121.80109 * 0.02562 * 6 4 3 8 8 C 1.39567 * 120.63005 * 359.97438 * 7 6 4 9 9 C 1.47608 * 120.50296 * 179.97438 * 8 7 6 10 10 O 1.21582 * 120.00096 * 172.34483 * 9 8 7 11 11 N 1.34781 * 120.00127 * 352.34432 * 9 8 7 12 12 C 1.46501 * 120.00129 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.46964 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.44105 * 300.05025 * 13 12 11 15 15 C 1.53146 * 109.43762 * 59.96231 * 13 12 11 16 16 C 1.53703 * 108.87535 * 66.17523 * 15 13 12 17 17 H 1.09001 * 112.09868 * 187.61833 * 16 15 13 18 18 C 1.54605 * 107.83179 * 312.22748 * 16 15 13 19 19 C 1.54822 * 104.65164 * 88.55373 * 18 16 15 20 20 C 1.54610 * 104.65378 * 359.97438 * 19 18 16 21 21 H 1.08998 * 112.69176 * 147.18768 * 20 19 18 22 22 C 1.53144 * 109.43593 * 180.18657 * 13 12 11 23 23 N 1.48290 * 107.27720 * 64.01109 * 16 15 13 24 24 C 1.36932 * 128.21267 * 107.39683 * 23 16 15 25 25 H 1.08003 * 119.99946 * 156.19749 * 24 23 16 26 26 C 1.38808 * 120.00047 * 336.19264 * 24 23 16 27 27 N 1.31620 * 119.99900 * 354.59298 * 26 24 23 28 28 Si 1.86805 * 120.00068 * 174.59069 * 26 24 23 29 29 H 1.48499 * 109.47071 * 180.02562 * 28 26 24 30 30 H 1.48503 * 109.47108 * 299.99899 * 28 26 24 31 31 H 1.48498 * 109.47051 * 60.00313 * 28 26 24 32 32 H 1.09001 * 109.47541 * 271.13204 * 1 2 3 33 33 H 1.09000 * 109.47140 * 31.13778 * 1 2 3 34 34 H 1.09005 * 109.47128 * 151.13088 * 1 2 3 35 35 H 1.07997 * 120.37017 * 359.97438 * 3 2 1 36 36 H 0.96700 * 113.99752 * 269.98060 * 5 4 3 37 37 H 1.08004 * 119.68750 * 179.97438 * 7 6 4 38 38 H 0.97001 * 120.00082 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.46620 * 60.00353 * 12 11 9 40 40 H 1.09001 * 109.47480 * 300.00340 * 12 11 9 41 41 H 1.08995 * 109.57202 * 306.35885 * 15 13 12 42 42 H 1.08996 * 109.66964 * 186.04963 * 15 13 12 43 43 H 1.09006 * 110.38232 * 207.48272 * 18 16 15 44 44 H 1.09004 * 110.38459 * 329.84806 * 18 16 15 45 45 H 1.09002 * 110.33204 * 241.26263 * 19 18 16 46 46 H 1.08994 * 110.52796 * 118.83689 * 19 18 16 47 47 H 1.09004 * 109.57267 * 53.63996 * 22 13 12 48 48 H 1.09004 * 109.57367 * 173.88664 * 22 13 12 49 49 H 0.97004 * 120.00035 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0057 5 8 4.3042 2.3078 -0.0114 6 7 4.2547 -0.0066 -0.0052 7 6 3.6204 -1.1600 0.0002 8 6 2.2255 -1.2044 0.0061 9 6 1.5171 -2.4994 0.0116 10 8 0.3104 -2.5316 0.1570 11 7 2.2079 -3.6461 -0.1446 12 6 1.5049 -4.9314 -0.1387 13 6 2.5136 -6.0652 -0.3324 14 1 3.0271 -5.9352 -1.2851 15 6 3.5374 -6.0367 0.8062 16 6 2.8236 -6.3728 2.1253 17 1 3.4740 -6.2379 2.9895 18 6 1.5421 -5.5114 2.2030 19 6 0.4564 -6.3599 1.4971 20 6 1.1896 -7.6497 1.0621 21 1 0.5442 -8.5279 1.0835 22 6 1.7774 -7.4081 -0.3307 23 7 2.3224 -7.7639 2.0128 24 6 2.7970 -8.8881 2.6342 25 1 2.1481 -9.7390 2.7803 26 6 4.1120 -8.9340 3.0761 27 7 4.9326 -7.9414 2.8046 28 14 4.7171 -10.4047 4.0563 29 1 6.1470 -10.2112 4.4072 30 1 3.9160 -10.5341 5.3000 31 1 4.5692 -11.6373 3.2415 32 1 -0.3634 0.0203 1.0274 33 1 -0.3633 0.8796 -0.5314 34 1 -0.3634 -0.9000 -0.4962 35 1 1.6936 2.1314 -0.0004 36 1 4.5038 2.6423 -0.8965 37 1 4.1848 -2.0808 0.0000 38 1 3.1707 -3.6204 -0.2603 39 1 0.7761 -4.9506 -0.9490 40 1 0.9921 -5.0607 0.8144 41 1 3.9806 -5.0432 0.8739 42 1 4.3184 -6.7727 0.6159 43 1 1.2692 -5.3298 3.2426 44 1 1.6866 -4.5676 1.6771 45 1 0.0697 -5.8313 0.6258 46 1 -0.3524 -6.5972 2.1880 47 1 0.9747 -7.3854 -1.0678 48 1 2.4761 -8.2079 -0.5762 49 1 5.8517 -7.9737 3.1131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048562411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:04 Heat of formation + Delta-G solvation = 61.074284 kcal Electronic energy + Delta-G solvation = -31624.287746 eV Core-core repulsion = 27555.400824 eV Total energy + Delta-G solvation = -4068.886922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.76653 -41.74199 -40.01751 -38.00183 -36.31899 -34.93558 -34.48496 -32.96726 -32.28556 -31.72597 -31.24337 -29.05294 -28.01721 -25.70789 -24.97761 -24.76963 -23.31271 -22.17905 -21.92467 -21.00975 -20.37748 -19.45581 -19.00071 -18.55545 -18.25251 -17.33430 -16.88675 -16.61422 -16.51337 -16.00544 -15.85484 -15.48737 -14.94849 -14.56605 -14.47392 -14.40666 -14.15119 -13.96580 -13.77709 -13.64233 -13.55351 -13.37933 -13.13578 -13.13223 -12.96947 -12.87552 -12.67048 -12.60923 -12.41818 -12.31775 -11.99710 -11.38137 -11.24183 -11.02787 -10.93637 -10.87974 -10.78361 -10.64700 -10.42891 -10.35087 -10.08712 -9.41022 -8.59136 -7.83027 -5.20153 -0.51380 0.08596 1.47644 1.48663 1.54625 1.75968 2.19959 2.50626 2.52082 2.70665 3.35389 3.46905 3.62018 3.65143 3.68734 3.93783 4.00033 4.03326 4.07248 4.21044 4.30568 4.31980 4.44489 4.47933 4.59560 4.63150 4.67400 4.70080 4.76862 4.81299 4.83513 4.96388 5.00918 5.08074 5.09357 5.18671 5.20647 5.32634 5.35191 5.42939 5.45696 5.55988 5.59026 5.61153 5.68128 5.81307 5.99098 6.34055 6.52514 6.56321 6.78130 7.14502 7.21538 7.79459 8.64800 9.28766 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.002869 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.820476 B = 9756.667332 C =10746.261982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.028 3.972 3 C -0.191 4.191 4 C 0.330 3.670 5 O -0.488 6.488 6 N -0.536 5.536 7 C 0.164 3.836 8 C -0.215 4.215 9 C 0.561 3.439 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.014 3.986 13 C -0.078 4.078 14 H 0.069 0.931 15 C -0.101 4.101 16 C 0.182 3.818 17 H 0.050 0.950 18 C -0.164 4.164 19 C -0.148 4.148 20 C 0.138 3.862 21 H 0.066 0.934 22 C -0.115 4.115 23 N -0.605 5.605 24 C -0.239 4.239 25 H 0.067 0.933 26 C -0.049 4.049 27 N -0.927 5.927 28 Si 0.965 3.035 29 H -0.296 1.296 30 H -0.284 1.284 31 H -0.280 1.280 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.175 0.825 36 H 0.426 0.574 37 H 0.176 0.824 38 H 0.403 0.597 39 H 0.062 0.938 40 H 0.184 0.816 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 18.442 -10.729 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.020 3.980 3 C -0.212 4.212 4 C 0.153 3.847 5 O -0.299 6.299 6 N -0.256 5.256 7 C 0.005 3.995 8 C -0.220 4.220 9 C 0.348 3.652 10 O -0.437 6.437 11 N -0.360 5.360 12 C -0.105 4.105 13 C -0.097 4.097 14 H 0.087 0.913 15 C -0.140 4.140 16 C 0.076 3.924 17 H 0.068 0.932 18 C -0.202 4.202 19 C -0.186 4.186 20 C 0.031 3.969 21 H 0.084 0.916 22 C -0.155 4.155 23 N -0.327 5.327 24 C -0.369 4.369 25 H 0.085 0.915 26 C -0.245 4.245 27 N -0.573 5.573 28 Si 0.795 3.205 29 H -0.222 1.222 30 H -0.210 1.210 31 H -0.206 1.206 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.192 0.808 36 H 0.288 0.712 37 H 0.193 0.807 38 H 0.239 0.761 39 H 0.081 0.919 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.838 18.308 -9.945 21.929 hybrid contribution 0.879 -1.075 0.145 1.396 sum -5.959 17.234 -9.800 20.701 Atomic orbital electron populations 1.21202 0.88007 1.05125 1.03996 1.20602 0.98324 0.90652 0.88436 1.22186 0.93168 1.00279 1.05524 1.19612 0.87782 0.85285 0.92066 1.84676 1.75854 1.33296 1.36114 1.67194 1.42820 0.98949 1.16619 1.22943 0.90375 0.95684 0.90474 1.20902 0.95267 0.94541 1.11311 1.18017 0.86688 0.83735 0.76711 1.90686 1.14527 1.87259 1.51222 1.46188 1.11670 1.06020 1.72108 1.24925 0.95911 0.80395 1.09257 1.21162 0.95934 0.94249 0.98312 0.91251 1.21868 0.97277 0.99095 0.95797 1.21187 0.92100 0.83346 0.95815 0.93211 1.23592 0.97137 1.00009 0.99477 1.23398 0.97342 0.96715 1.01109 1.21697 0.89745 0.95944 0.89470 0.91629 1.21918 0.99514 0.95969 0.98055 1.45289 1.35202 1.03203 1.49043 1.19143 0.93301 0.93716 1.30743 0.91544 1.25651 0.95863 1.00172 1.02779 1.70045 1.04667 1.32844 1.49726 0.85375 0.76592 0.79868 0.78714 1.22202 1.20993 1.20572 0.89925 0.89054 0.89177 0.80780 0.71191 0.80705 0.76061 0.91949 0.80068 0.92983 0.94100 0.94108 0.87194 0.86512 0.92148 0.90162 0.94186 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.09 71.23 0.65 -1.57 16 2 C 0.03 0.55 5.95 -19.43 -0.12 0.43 16 3 C -0.19 -3.09 9.73 22.43 0.22 -2.87 16 4 C 0.33 6.37 7.74 84.81 0.66 7.03 16 5 O -0.49 -7.44 13.55 -88.01 -1.19 -8.64 16 6 N -0.54 -12.45 10.37 -307.80 -3.19 -15.64 16 7 C 0.16 3.55 10.68 85.04 0.91 4.46 16 8 C -0.21 -4.83 5.89 -20.00 -0.12 -4.95 16 9 C 0.56 14.39 7.45 86.72 0.65 15.03 16 10 O -0.56 -16.57 13.40 -3.97 -0.05 -16.63 16 11 N -0.71 -17.26 4.33 -466.20 -2.02 -19.28 16 12 C 0.01 0.39 2.68 86.38 0.23 0.62 16 13 C -0.08 -2.42 2.76 -10.70 -0.03 -2.45 16 14 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 15 C -0.10 -3.94 5.11 30.88 0.16 -3.78 16 16 C 0.18 8.12 3.10 45.43 0.14 8.26 16 17 H 0.05 2.66 6.81 -2.39 -0.02 2.64 16 18 C -0.16 -5.95 5.74 31.76 0.18 -5.77 16 19 C -0.15 -4.83 5.75 31.76 0.18 -4.65 16 20 C 0.14 5.27 4.29 45.22 0.19 5.47 16 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 22 C -0.11 -3.85 5.35 30.67 0.16 -3.69 16 23 N -0.61 -29.19 2.80 -638.26 -1.79 -30.97 16 24 C -0.24 -13.03 10.35 84.03 0.87 -12.16 16 25 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 26 C -0.05 -2.71 5.43 84.86 0.46 -2.25 16 27 N -0.93 -52.80 10.33 21.65 0.22 -52.58 16 28 Si 0.97 45.06 29.56 68.60 2.03 47.09 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 30 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 31 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 34 H 0.09 1.98 5.49 -2.38 -0.01 1.97 16 35 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.43 1.83 9.06 -74.06 -0.67 1.16 16 37 H 0.18 3.17 6.48 -2.91 -0.02 3.15 16 38 H 0.40 8.63 5.42 -92.71 -0.50 8.13 16 39 H 0.06 1.61 8.00 -2.39 -0.02 1.59 16 40 H 0.18 5.42 1.12 -109.38 -0.12 5.30 16 41 H 0.05 1.78 6.71 -2.39 -0.02 1.76 16 42 H 0.04 1.95 7.46 -2.39 -0.02 1.93 16 43 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16 44 H 0.11 3.58 3.94 -2.38 -0.01 3.57 16 45 H 0.12 3.25 4.83 -2.39 -0.01 3.24 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -69.44 367.37 -0.86 -70.30 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.27 Total: 29.18 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.40 Total: -2.83 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -6.77 Total: -118.48 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.25 Total: -25.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.44 -0.86 -70.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048562411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.376 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds