Wall clock time and date at job start Wed Apr 1 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38092 * 119.58007 * 2 1 4 4 C 1.38786 * 119.28622 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.75563 * 179.97438 * 4 3 2 6 6 C 1.38418 * 118.48598 * 0.02562 * 4 3 2 7 7 C 1.50693 * 120.44453 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47336 * 89.99927 * 7 6 4 9 9 O 1.21271 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00125 * 180.02562 * 8 7 6 11 11 C 1.46754 * 125.32920 * 359.69238 * 10 8 7 12 12 C 1.54099 * 106.62802 * 161.56338 * 11 10 8 13 13 H 1.09001 * 113.49107 * 151.38081 * 12 11 10 14 14 C 1.53964 * 109.46387 * 278.65739 * 12 11 10 15 15 N 1.46775 * 106.63388 * 138.17524 * 14 12 11 16 16 C 1.36931 * 125.34113 * 161.48595 * 15 14 12 17 17 H 1.08001 * 120.00128 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00095 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99583 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00161 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47063 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47047 * 119.99780 * 20 18 16 23 23 H 1.48503 * 109.46829 * 239.99609 * 20 18 16 24 24 C 1.46673 * 109.31914 * 341.48602 * 15 14 12 25 25 C 1.53726 * 107.94387 * 0.54581 * 24 15 14 26 26 H 1.08992 * 113.06143 * 140.00140 * 25 24 15 27 27 C 1.46633 * 125.33118 * 179.97438 * 10 8 7 28 28 C 1.38883 * 119.11180 * 359.97438 * 6 4 3 29 29 O 1.35676 * 119.68020 * 180.02562 * 28 6 4 30 30 N 1.31929 * 119.58762 * 179.72859 * 2 1 3 31 31 H 1.08999 * 109.47015 * 90.00191 * 1 2 3 32 32 H 1.09000 * 109.46646 * 209.99343 * 1 2 3 33 33 H 1.09000 * 109.47248 * 330.00061 * 1 2 3 34 34 H 1.08005 * 120.35872 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47340 * 89.99945 * 5 4 3 36 36 H 1.09007 * 109.47327 * 210.00463 * 5 4 3 37 37 H 1.09001 * 109.47582 * 329.99855 * 5 4 3 38 38 H 1.09005 * 109.47317 * 210.00320 * 7 6 4 39 39 H 1.09005 * 109.47154 * 329.99590 * 7 6 4 40 40 H 1.08993 * 110.00605 * 280.99912 * 11 10 8 41 41 H 1.08997 * 110.00553 * 42.36809 * 11 10 8 42 42 H 1.09003 * 110.02852 * 257.47152 * 14 12 11 43 43 H 1.09005 * 110.02236 * 18.88067 * 14 12 11 44 44 H 0.97001 * 119.99805 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.77135 * 240.92499 * 24 15 14 46 46 H 1.08996 * 109.77326 * 120.16682 * 24 15 14 47 47 H 1.09004 * 109.76479 * 300.45850 * 27 10 8 48 48 H 1.09005 * 109.75791 * 61.17782 * 27 10 8 49 49 H 0.96703 * 113.99983 * 90.00152 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3538 2.4849 0.0000 6 6 4.2305 -0.0261 0.0005 7 6 5.7363 -0.0854 0.0005 8 6 6.2383 -0.1051 1.4213 9 8 5.4508 -0.0746 2.3431 10 7 7.5623 -0.1567 1.6676 11 6 8.6144 -0.2039 0.6455 12 6 9.9241 0.2148 1.3412 13 1 10.8145 -0.2254 0.8922 14 6 9.9905 1.7505 1.4284 15 7 10.5048 2.0736 2.7646 16 6 11.0506 3.2738 3.1344 17 1 11.1281 4.0761 2.4156 18 6 11.5043 3.4592 4.4332 19 7 11.4093 2.4815 5.3092 20 14 12.2483 5.0966 4.9378 21 1 12.2395 6.0229 3.7773 22 1 11.4508 5.6823 6.0453 23 1 13.6463 4.8860 5.3921 24 6 10.3423 0.9093 3.6417 25 6 9.7027 -0.2194 2.8170 26 1 10.1251 -1.2000 3.0356 27 6 8.1770 -0.1803 2.9986 28 6 3.4803 -1.1949 0.0005 29 8 4.1094 -2.3970 0.0010 30 7 2.1585 -1.1472 0.0054 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3632 -0.8901 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6477 2.1357 0.0004 35 1 4.5409 2.7969 1.0275 36 1 5.3039 2.3368 -0.5135 37 1 3.7790 3.2549 -0.5146 38 1 6.0644 -0.9889 -0.5134 39 1 6.1343 0.7896 -0.5134 40 1 8.7056 -1.2157 0.2508 41 1 8.3825 0.4920 -0.1607 42 1 10.6646 2.1390 0.6650 43 1 8.9949 2.1751 1.2988 44 1 11.7267 2.6110 6.2167 45 1 9.6943 1.1664 4.4796 46 1 11.3156 0.5886 4.0129 47 1 7.8943 0.7158 3.5511 48 1 7.8479 -1.0667 3.5409 49 1 4.2914 -2.7453 0.8846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049003041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:33 Heat of formation + Delta-G solvation = -13.118340 kcal Electronic energy + Delta-G solvation = -30885.477643 eV Core-core repulsion = 26813.373488 eV Total energy + Delta-G solvation = -4072.104155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.07282 -40.09546 -38.23293 -37.39568 -35.07802 -34.88856 -32.36643 -32.05680 -30.84666 -29.94405 -29.61696 -27.91828 -26.52345 -25.55214 -25.03946 -23.14573 -22.62468 -21.10459 -20.24013 -19.44366 -19.18468 -18.47020 -17.43869 -17.27264 -16.68882 -16.05635 -15.72790 -15.65787 -14.80826 -14.75631 -14.62096 -14.30967 -13.74507 -13.66620 -13.55645 -13.31604 -13.22256 -13.12104 -12.92455 -12.73127 -12.50990 -12.15459 -12.08437 -11.98589 -11.83988 -11.75233 -11.70624 -11.68015 -11.46257 -10.94489 -10.86235 -10.40536 -10.14074 -10.06307 -9.96155 -9.84923 -9.71792 -9.56988 -9.50231 -8.77634 -8.66013 -8.42863 -6.88501 -5.77196 -3.10785 0.82159 1.05594 2.69806 3.07055 3.30164 3.36509 3.42054 3.44565 3.67452 4.27129 4.41788 4.44149 4.57507 4.64896 4.67387 4.73499 4.97172 5.03780 5.09633 5.16945 5.21913 5.25089 5.32348 5.39626 5.42436 5.47870 5.49282 5.52455 5.58938 5.65791 5.68177 5.72394 5.85636 5.88924 5.91237 6.08131 6.13414 6.21950 6.28697 6.38363 6.48178 6.55882 6.63919 6.77315 7.32522 7.49002 7.51585 7.66556 7.76070 7.80394 8.21182 8.25135 9.17203 9.77630 10.41130 11.34512 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002570 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.133338 B =10892.387715 C =11639.408152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.009 4.009 5 C -0.122 4.122 6 C -0.134 4.134 7 C -0.094 4.094 8 C 0.529 3.471 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.110 4.110 13 H 0.099 0.901 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.187 3.813 25 C -0.123 4.123 26 H 0.088 0.912 27 C 0.119 3.881 28 C 0.332 3.668 29 O -0.483 6.483 30 N -0.508 5.508 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.016 0.984 44 H 0.252 0.748 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 -6.519 -13.383 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.178 4.178 6 C -0.138 4.138 7 C -0.135 4.135 8 C 0.317 3.683 9 O -0.420 6.420 10 N -0.340 5.340 11 C -0.015 4.015 12 C -0.130 4.130 13 H 0.118 0.882 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.062 3.938 25 C -0.143 4.143 26 H 0.107 0.893 27 C -0.003 4.003 28 C 0.152 3.848 29 O -0.290 6.290 30 N -0.228 5.228 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.657 -7.145 -13.296 21.748 hybrid contribution 1.069 1.409 0.851 1.962 sum -14.588 -5.736 -12.445 20.015 Atomic orbital electron populations 1.20727 0.88577 1.03612 1.03097 1.20950 0.96669 0.87209 0.94010 1.21782 0.93875 0.99366 1.05286 1.20076 0.93731 0.94909 0.92964 1.20922 0.99888 0.93302 1.03730 1.20105 0.95469 0.92861 1.05355 1.20530 0.91695 1.05784 0.95443 1.20023 0.80718 0.76697 0.90836 1.90710 1.54447 1.50388 1.46407 1.48276 1.04863 1.72186 1.08708 1.22017 0.87596 1.00734 0.91151 1.22968 0.95957 0.98431 0.95602 0.88234 1.21240 0.96613 0.90803 0.89499 1.44223 1.71559 1.11693 1.05374 1.19077 1.32447 0.89024 0.95187 0.90372 1.24808 1.01371 0.98038 0.96172 1.69958 1.52057 1.30775 1.04115 0.86037 0.78567 0.82853 0.78252 1.20515 1.21728 1.21712 1.21038 0.98735 0.83205 0.90847 1.23144 0.93664 1.01210 0.96241 0.89322 1.21975 0.92575 1.02003 0.83706 1.18781 0.86582 0.84812 0.94580 1.84674 1.76560 1.33609 1.34186 1.66956 1.09475 1.30728 1.15662 0.90330 0.90410 0.90489 0.84477 0.89727 0.90721 0.90681 0.87285 0.87578 0.91614 0.90940 0.94671 0.96608 0.93709 0.93291 0.93313 0.90681 0.92266 0.74001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.43 16 2 C 0.15 1.71 6.78 -82.60 -0.56 1.15 16 3 C -0.18 -1.95 9.44 -39.43 -0.37 -2.32 16 4 C -0.01 -0.11 5.91 -104.35 -0.62 -0.73 16 5 C -0.12 -1.20 9.67 36.00 0.35 -0.85 16 6 C -0.13 -1.71 4.40 -104.32 -0.46 -2.17 16 7 C -0.09 -1.07 4.28 -29.04 -0.12 -1.20 16 8 C 0.53 7.85 7.83 -10.99 -0.09 7.77 16 9 O -0.54 -10.04 16.34 5.57 0.09 -9.95 16 10 N -0.61 -8.92 3.30 -172.27 -0.57 -9.49 16 11 C 0.11 1.31 5.77 -3.33 -0.02 1.29 16 12 C -0.11 -1.65 4.16 -88.26 -0.37 -2.02 16 13 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.14 2.77 6.49 -3.39 -0.02 2.74 16 15 N -0.60 -14.68 3.38 -171.84 -0.58 -15.26 16 16 C -0.23 -6.21 10.25 -15.06 -0.15 -6.36 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.92 -26.47 10.25 55.49 0.57 -25.90 16 20 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 C 0.19 4.28 4.77 -3.57 -0.02 4.27 16 25 C -0.12 -2.09 4.02 -88.60 -0.36 -2.45 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 C 0.12 2.03 6.21 -3.61 -0.02 2.00 16 28 C 0.33 4.50 7.72 -17.12 -0.13 4.37 16 29 O -0.48 -5.84 12.62 -18.73 -0.24 -6.07 16 30 N -0.51 -7.02 10.30 -9.55 -0.10 -7.12 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.67 6.08 -51.93 -0.32 0.36 16 37 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.11 1.08 7.55 -51.93 -0.39 0.69 16 39 H 0.11 1.02 5.81 -51.93 -0.30 0.72 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.76 7.43 -51.93 -0.39 0.37 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.02 0.32 7.72 -51.93 -0.40 -0.08 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.05 1.27 6.73 -51.93 -0.35 0.92 16 46 H 0.05 1.25 7.37 -51.93 -0.38 0.86 16 47 H 0.07 1.53 7.29 -51.93 -0.38 1.15 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.40 3.66 9.06 45.56 0.41 4.08 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -34.42 391.00 -9.33 -43.75 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.69 Total: 2.66 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.69 Total: 4.76 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.68 Total: -57.78 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.15 Total: -16.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.42 -9.33 -43.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049003041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.633 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds