Wall clock time and date at job start Wed Apr 1 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38092 * 119.58007 * 2 1 4 4 C 1.38786 * 119.28622 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.75563 * 179.97438 * 4 3 2 6 6 C 1.38418 * 118.48598 * 0.02562 * 4 3 2 7 7 C 1.50693 * 120.44453 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47336 * 89.99927 * 7 6 4 9 9 O 1.21271 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00125 * 180.02562 * 8 7 6 11 11 C 1.46754 * 125.32920 * 359.69238 * 10 8 7 12 12 C 1.54099 * 106.62802 * 161.56338 * 11 10 8 13 13 H 1.09001 * 113.49107 * 151.38081 * 12 11 10 14 14 C 1.53964 * 109.46387 * 278.65739 * 12 11 10 15 15 N 1.46775 * 106.63388 * 138.17524 * 14 12 11 16 16 C 1.36931 * 125.34113 * 161.48595 * 15 14 12 17 17 H 1.08001 * 120.00128 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00095 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99583 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00161 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47063 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47047 * 119.99780 * 20 18 16 23 23 H 1.48503 * 109.46829 * 239.99609 * 20 18 16 24 24 C 1.46673 * 109.31914 * 341.48602 * 15 14 12 25 25 C 1.53726 * 107.94387 * 0.54581 * 24 15 14 26 26 H 1.08992 * 113.06143 * 140.00140 * 25 24 15 27 27 C 1.46633 * 125.33118 * 179.97438 * 10 8 7 28 28 C 1.38883 * 119.11180 * 359.97438 * 6 4 3 29 29 O 1.35676 * 119.68020 * 180.02562 * 28 6 4 30 30 N 1.31929 * 119.58762 * 179.72859 * 2 1 3 31 31 H 1.08999 * 109.47015 * 90.00191 * 1 2 3 32 32 H 1.09000 * 109.46646 * 209.99343 * 1 2 3 33 33 H 1.09000 * 109.47248 * 330.00061 * 1 2 3 34 34 H 1.08005 * 120.35872 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47340 * 89.99945 * 5 4 3 36 36 H 1.09007 * 109.47327 * 210.00463 * 5 4 3 37 37 H 1.09001 * 109.47582 * 329.99855 * 5 4 3 38 38 H 1.09005 * 109.47317 * 210.00320 * 7 6 4 39 39 H 1.09005 * 109.47154 * 329.99590 * 7 6 4 40 40 H 1.08993 * 110.00605 * 280.99912 * 11 10 8 41 41 H 1.08997 * 110.00553 * 42.36809 * 11 10 8 42 42 H 1.09003 * 110.02852 * 257.47152 * 14 12 11 43 43 H 1.09005 * 110.02236 * 18.88067 * 14 12 11 44 44 H 0.97001 * 119.99805 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.77135 * 240.92499 * 24 15 14 46 46 H 1.08996 * 109.77326 * 120.16682 * 24 15 14 47 47 H 1.09004 * 109.76479 * 300.45850 * 27 10 8 48 48 H 1.09005 * 109.75791 * 61.17782 * 27 10 8 49 49 H 0.96703 * 113.99983 * 90.00152 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3538 2.4849 0.0000 6 6 4.2305 -0.0261 0.0005 7 6 5.7363 -0.0854 0.0005 8 6 6.2383 -0.1051 1.4213 9 8 5.4508 -0.0746 2.3431 10 7 7.5623 -0.1567 1.6676 11 6 8.6144 -0.2039 0.6455 12 6 9.9241 0.2148 1.3412 13 1 10.8145 -0.2254 0.8922 14 6 9.9905 1.7505 1.4284 15 7 10.5048 2.0736 2.7646 16 6 11.0506 3.2738 3.1344 17 1 11.1281 4.0761 2.4156 18 6 11.5043 3.4592 4.4332 19 7 11.4093 2.4815 5.3092 20 14 12.2483 5.0966 4.9378 21 1 12.2395 6.0229 3.7773 22 1 11.4508 5.6823 6.0453 23 1 13.6463 4.8860 5.3921 24 6 10.3423 0.9093 3.6417 25 6 9.7027 -0.2194 2.8170 26 1 10.1251 -1.2000 3.0356 27 6 8.1770 -0.1803 2.9986 28 6 3.4803 -1.1949 0.0005 29 8 4.1094 -2.3970 0.0010 30 7 2.1585 -1.1472 0.0054 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3632 -0.8901 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6477 2.1357 0.0004 35 1 4.5409 2.7969 1.0275 36 1 5.3039 2.3368 -0.5135 37 1 3.7790 3.2549 -0.5146 38 1 6.0644 -0.9889 -0.5134 39 1 6.1343 0.7896 -0.5134 40 1 8.7056 -1.2157 0.2508 41 1 8.3825 0.4920 -0.1607 42 1 10.6646 2.1390 0.6650 43 1 8.9949 2.1751 1.2988 44 1 11.7267 2.6110 6.2167 45 1 9.6943 1.1664 4.4796 46 1 11.3156 0.5886 4.0129 47 1 7.8943 0.7158 3.5511 48 1 7.8479 -1.0667 3.5409 49 1 4.2914 -2.7453 0.8846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049003041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:32 Heat of formation + Delta-G solvation = -38.691438 kcal Electronic energy + Delta-G solvation = -30886.586576 eV Core-core repulsion = 26813.373488 eV Total energy + Delta-G solvation = -4073.213088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.01946 -41.29478 -39.55740 -38.25780 -36.62925 -35.80128 -34.08945 -32.95906 -32.10266 -31.26439 -30.94981 -28.71874 -27.73879 -27.12682 -26.36630 -24.44711 -23.62939 -22.03132 -21.87676 -20.84011 -20.32888 -19.35119 -18.88850 -18.28991 -18.13696 -17.25703 -16.81980 -16.67517 -16.59736 -15.91469 -15.78328 -15.49058 -15.13400 -14.73510 -14.61858 -14.45376 -14.31663 -13.99528 -13.88355 -13.83624 -13.59306 -13.47182 -13.28231 -13.20187 -13.15322 -12.86241 -12.79396 -12.77102 -12.67536 -12.51042 -12.46197 -11.97665 -11.87482 -11.66274 -11.57475 -11.43210 -11.06377 -10.72206 -10.45233 -10.39897 -9.64284 -9.63167 -8.88326 -7.86361 -5.21135 -0.04221 0.18610 1.44810 1.45534 1.55647 1.57026 1.98086 2.42685 2.48486 2.82452 3.31753 3.40569 3.44314 3.52093 3.66150 3.73446 3.80543 3.87585 3.95036 3.97109 4.21586 4.24691 4.32110 4.35614 4.43320 4.54338 4.56143 4.60587 4.64617 4.70710 4.78283 4.79719 4.80400 4.84939 4.95358 4.99074 5.04051 5.09835 5.14657 5.21054 5.25892 5.31796 5.39268 5.48302 5.61020 5.62758 5.77842 6.20797 6.48469 6.54095 6.93994 7.10103 7.11301 7.79946 8.41132 9.23956 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002570 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.133338 B =10892.387715 C =11639.408152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.185 4.185 4 C -0.022 4.022 5 C -0.120 4.120 6 C -0.150 4.150 7 C -0.081 4.081 8 C 0.529 3.471 9 O -0.587 6.587 10 N -0.608 5.608 11 C 0.111 3.889 12 C -0.095 4.095 13 H 0.128 0.872 14 C 0.138 3.862 15 N -0.625 5.625 16 C -0.239 4.239 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.976 3.024 21 H -0.264 1.264 22 H -0.297 1.297 23 H -0.291 1.291 24 C 0.197 3.803 25 C -0.111 4.111 26 H 0.116 0.884 27 C 0.128 3.872 28 C 0.312 3.688 29 O -0.488 6.488 30 N -0.538 5.538 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.246 0.754 45 H 0.003 0.997 46 H 0.014 0.986 47 H 0.029 0.971 48 H 0.065 0.935 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.248 -6.474 -16.494 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.204 4.204 4 C -0.029 4.029 5 C -0.176 4.176 6 C -0.154 4.154 7 C -0.121 4.121 8 C 0.319 3.681 9 O -0.467 6.467 10 N -0.340 5.340 11 C -0.011 4.011 12 C -0.115 4.115 13 H 0.146 0.854 14 C 0.013 3.987 15 N -0.351 5.351 16 C -0.368 4.368 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.805 3.195 21 H -0.188 1.188 22 H -0.224 1.224 23 H -0.218 1.218 24 C 0.071 3.929 25 C -0.130 4.130 26 H 0.134 0.866 27 C 0.005 3.995 28 C 0.134 3.866 29 O -0.296 6.296 30 N -0.258 5.258 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.184 0.816 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.032 0.968 47 H 0.047 0.953 48 H 0.083 0.917 49 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -16.093 -7.106 -16.469 24.098 hybrid contribution 1.138 1.433 1.828 2.586 sum -14.955 -5.673 -14.642 21.684 Atomic orbital electron populations 1.20825 0.86252 1.04378 1.04277 1.21595 0.98343 0.87019 0.93196 1.22149 0.93794 1.00333 1.04165 1.20434 0.94540 0.95336 0.92624 1.20946 1.00610 0.93122 1.02908 1.20280 0.96167 0.93002 1.05961 1.20519 0.90947 1.07765 0.92861 1.20663 0.80171 0.75383 0.91898 1.90693 1.55579 1.52329 1.48137 1.48346 1.05545 1.71931 1.08210 1.22245 0.84658 1.03778 0.90402 1.22995 0.99012 0.95114 0.94333 0.85406 1.21485 0.96076 0.94122 0.87057 1.44552 1.71367 1.11312 1.07868 1.19476 1.31555 0.90374 0.95357 0.89874 1.25642 1.02659 1.01307 0.96478 1.70191 1.53351 1.32570 1.03977 0.85040 0.77258 0.79345 0.77897 1.18796 1.22409 1.21794 1.20719 0.96380 0.84941 0.90816 1.22972 0.93079 1.00073 0.96906 0.86561 1.21634 0.92737 1.00057 0.85063 1.19040 0.86905 0.85422 0.95267 1.84630 1.76480 1.33435 1.35086 1.66994 1.09917 1.32112 1.16822 0.88810 0.91031 0.88319 0.81616 0.91633 0.89827 0.88269 0.85194 0.85338 0.87575 0.88288 0.93567 0.96966 0.94509 0.97890 0.96775 0.95286 0.91701 0.72997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.17 71.24 0.72 -0.66 16 2 C 0.14 2.95 6.78 42.51 0.29 3.24 16 3 C -0.18 -3.61 9.44 22.37 0.21 -3.39 16 4 C -0.02 -0.48 5.91 -19.69 -0.12 -0.59 16 5 C -0.12 -2.11 9.67 71.23 0.69 -1.42 16 6 C -0.15 -3.61 4.40 -19.67 -0.09 -3.70 16 7 C -0.08 -1.63 4.28 29.10 0.12 -1.51 16 8 C 0.53 14.95 7.83 87.66 0.69 15.63 16 9 O -0.59 -21.95 16.34 -3.00 -0.05 -22.00 16 10 N -0.61 -16.64 3.30 -817.34 -2.70 -19.34 16 11 C 0.11 2.19 5.77 86.70 0.50 2.69 16 12 C -0.10 -2.56 4.16 -9.27 -0.04 -2.60 16 13 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 14 C 0.14 5.04 6.49 86.65 0.56 5.60 16 15 N -0.62 -30.95 3.38 -697.57 -2.36 -33.30 16 16 C -0.24 -13.14 10.25 84.04 0.86 -12.28 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.86 5.48 84.86 0.47 -3.39 16 19 N -0.95 -57.28 10.25 21.65 0.22 -57.06 16 20 Si 0.98 45.68 29.55 68.60 2.03 47.70 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 C 0.20 9.40 4.77 86.59 0.41 9.82 16 25 C -0.11 -3.68 4.02 -9.49 -0.04 -3.71 16 26 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 27 C 0.13 4.37 6.21 86.59 0.54 4.90 16 28 C 0.31 8.26 7.72 84.78 0.65 8.91 16 29 O -0.49 -11.39 12.62 -89.94 -1.14 -12.52 16 30 N -0.54 -14.62 10.30 -296.98 -3.06 -17.68 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.28 6.08 -2.38 -0.01 1.27 16 37 H 0.10 1.22 8.10 -2.39 -0.02 1.21 16 38 H 0.13 2.08 7.55 -2.38 -0.02 2.07 16 39 H 0.13 1.99 5.81 -2.38 -0.01 1.97 16 40 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 1.52 7.43 -2.39 -0.02 1.50 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.01 0.47 7.72 -2.38 -0.02 0.45 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 45 H 0.00 0.16 6.73 -2.39 -0.02 0.15 16 46 H 0.01 0.76 7.37 -2.39 -0.02 0.74 16 47 H 0.03 1.25 7.29 -2.39 -0.02 1.23 16 48 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 49 H 0.41 7.37 9.06 -74.06 -0.67 6.70 16 Total: -1.00 -80.53 391.00 -0.31 -80.84 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.31 Total: 15.82 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.44 Total: 17.54 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -7.89 Total: -127.38 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.18 Total: -34.52 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -80.53 -0.31 -80.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049003041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.145 kcal (2) G-P(sol) polarization free energy of solvation -80.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds