Wall clock time and date at job start Wed Apr 1 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34858 * 119.10063 * 2 1 4 4 C 1.41673 * 119.33807 * 179.69564 * 3 2 1 5 5 O 1.22088 * 121.07134 * 180.29347 * 4 3 2 6 6 C 1.47096 * 117.86277 * 0.53486 * 4 3 2 7 7 C 1.47288 * 120.88123 * 179.78385 * 6 4 3 8 8 O 1.21618 * 120.00375 * 323.02569 * 7 6 4 9 9 N 1.34777 * 119.99856 * 143.03115 * 7 6 4 10 10 C 1.46790 * 119.57677 * 356.03313 * 9 7 6 11 11 C 1.53468 * 107.60250 * 232.06156 * 10 9 7 12 12 C 1.52738 * 108.43678 * 301.92834 * 11 10 9 13 13 C 1.53009 * 110.80132 * 63.77107 * 12 11 10 14 14 H 1.08996 * 111.38360 * 69.71129 * 13 12 11 15 15 C 1.45125 * 119.57426 * 176.05735 * 9 7 6 16 16 H 1.08998 * 109.96582 * 11.91950 * 15 9 7 17 17 C 1.54419 * 111.60966 * 248.64447 * 15 9 7 18 18 C 1.54548 * 102.36309 * 203.21138 * 17 15 9 19 19 N 1.47121 * 107.26323 * 22.02054 * 18 17 15 20 20 C 1.36938 * 125.76568 * 182.48027 * 19 18 17 21 21 H 1.07997 * 120.00245 * 183.89300 * 20 19 18 22 22 C 1.38820 * 119.99851 * 3.89056 * 20 19 18 23 23 N 1.31614 * 119.99674 * 351.48660 * 22 20 19 24 24 Si 1.86801 * 119.99935 * 171.48678 * 22 20 19 25 25 H 1.48506 * 109.46861 * 275.01383 * 24 22 20 26 26 H 1.48498 * 109.46936 * 35.01093 * 24 22 20 27 27 H 1.48492 * 109.47160 * 155.01240 * 24 22 20 28 28 C 1.37986 * 118.23651 * 359.50898 * 6 4 3 29 29 N 1.34349 * 120.37336 * 0.23046 * 28 6 4 30 30 C 1.46493 * 118.80705 * 180.02562 * 29 28 6 31 31 H 1.08992 * 109.47574 * 264.37620 * 1 2 3 32 32 H 1.09003 * 109.46945 * 24.37607 * 1 2 3 33 33 H 1.09004 * 109.47110 * 144.37285 * 1 2 3 34 34 H 1.07995 * 120.33308 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.83447 * 112.53763 * 10 9 7 36 36 H 1.08997 * 109.88990 * 351.61253 * 10 9 7 37 37 H 1.08999 * 109.64295 * 182.23916 * 11 10 9 38 38 H 1.09003 * 109.81278 * 61.70709 * 11 10 9 39 39 H 1.09007 * 109.20839 * 303.43019 * 12 11 10 40 40 H 1.09006 * 109.21439 * 184.11225 * 12 11 10 41 41 H 1.09005 * 110.81166 * 321.65230 * 17 15 9 42 42 H 1.08996 * 110.81510 * 84.97633 * 17 15 9 43 43 H 1.09001 * 109.98951 * 262.54422 * 18 17 15 44 44 H 1.08997 * 109.77218 * 141.37762 * 18 17 15 45 45 H 0.97003 * 119.99630 * 180.02562 * 23 22 20 46 46 H 1.08004 * 119.81587 * 180.25505 * 28 6 4 47 47 H 1.09000 * 109.47305 * 88.88644 * 30 29 28 48 48 H 1.09001 * 109.47353 * 208.88292 * 30 29 28 49 49 H 1.09003 * 109.47334 * 328.88084 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1842 0.0066 5 8 4.2053 2.2325 0.0121 6 6 4.2725 -0.1133 0.0010 7 6 5.7436 -0.1847 0.0025 8 8 6.3927 0.6293 -0.6261 9 7 6.3706 -1.1524 0.7004 10 6 5.5833 -2.0764 1.5257 11 6 6.1922 -2.0743 2.9344 12 6 7.6580 -2.4902 2.8277 13 6 8.4552 -1.4675 2.0155 14 1 8.5654 -0.5284 2.5575 15 6 7.8154 -1.2670 0.6268 16 1 8.2350 -0.3827 0.1472 17 6 8.2470 -2.5489 -0.1181 18 6 9.6742 -2.7835 0.4265 19 7 9.7711 -2.0795 1.7147 20 6 10.8898 -1.9985 2.5003 21 1 10.8402 -1.5091 3.4617 22 6 12.0876 -2.5456 2.0609 23 7 12.1131 -3.2852 0.9726 24 14 13.6630 -2.2320 3.0144 25 1 14.2565 -0.9421 2.5792 26 1 13.3590 -2.1720 4.4667 27 1 14.6259 -3.3323 2.7552 28 6 3.5077 -1.2618 0.0001 29 7 2.1664 -1.1848 -0.0004 30 6 1.3880 -2.4258 -0.0007 31 1 -0.3634 -0.1007 1.0226 32 1 -0.3633 0.9361 -0.4242 33 1 -0.3633 -0.8353 -0.5986 34 1 1.6137 2.1082 -0.0004 35 1 5.6302 -3.0804 1.1041 36 1 4.5468 -1.7423 1.5705 37 1 5.6556 -2.7818 3.5666 38 1 6.1253 -1.0749 3.3643 39 1 7.7202 -3.4630 2.3397 40 1 8.0837 -2.5639 3.8285 41 1 7.5907 -3.3823 0.1330 42 1 8.2652 -2.3834 -1.1953 43 1 10.4097 -2.3830 -0.2711 44 1 9.8420 -3.8504 0.5735 45 1 12.9501 -3.6678 0.6657 46 1 3.9900 -2.2282 0.0003 47 1 1.2115 -2.7443 1.0267 48 1 0.4328 -2.2555 -0.4974 49 1 1.9405 -3.2011 -0.5316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049539042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:53 Heat of formation + Delta-G solvation = 18.811682 kcal Electronic energy + Delta-G solvation = -31587.728748 eV Core-core repulsion = 27517.009183 eV Total energy + Delta-G solvation = -4070.719566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.59492 -40.04177 -38.25203 -37.39598 -35.33464 -33.78533 -32.95527 -32.32436 -31.95405 -29.25439 -28.64021 -27.85614 -27.24457 -25.19860 -24.33103 -23.76586 -22.36506 -21.75196 -20.50515 -19.95144 -18.44987 -18.13851 -17.37539 -16.93742 -16.67743 -16.39392 -15.87247 -15.40931 -14.78368 -14.71755 -14.52396 -14.25027 -13.99952 -13.95512 -13.82020 -13.64842 -13.53716 -13.31145 -13.23651 -12.90060 -12.68379 -12.35257 -12.30762 -12.21817 -11.97420 -11.88448 -11.31692 -10.97848 -10.95016 -10.77990 -10.60697 -10.51122 -10.05762 -10.03027 -9.77992 -9.63024 -9.58002 -9.53651 -9.18030 -8.54647 -8.24965 -8.05773 -6.81687 -5.69112 -3.00645 0.72280 1.07094 2.03251 2.98729 3.22809 3.44470 3.50110 3.50494 3.71730 3.76889 4.05330 4.20692 4.35844 4.46393 4.52960 4.63378 4.74867 4.82843 4.87526 4.94232 5.01174 5.13809 5.23719 5.28463 5.41093 5.44416 5.47844 5.54041 5.59460 5.67075 5.70889 5.90820 6.00897 6.10748 6.13554 6.26618 6.29742 6.35806 6.40263 6.50978 6.53102 6.66045 6.79998 7.05697 7.13078 7.58265 7.64068 7.72715 7.85745 8.07828 8.27004 8.56385 9.24217 9.84337 10.50884 11.42916 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.002738 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.309708 B =10225.287633 C =10617.152559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.271 4.271 4 C 0.409 3.591 5 O -0.487 6.487 6 C -0.289 4.289 7 C 0.573 3.427 8 O -0.516 6.516 9 N -0.594 5.594 10 C 0.095 3.905 11 C -0.133 4.133 12 C -0.128 4.128 13 C 0.155 3.845 14 H 0.061 0.939 15 C 0.133 3.867 16 H 0.103 0.897 17 C -0.150 4.150 18 C 0.180 3.820 19 N -0.598 5.598 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.292 1.292 28 C 0.162 3.838 29 N -0.474 5.474 30 C 0.046 3.954 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.175 0.825 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.128 -3.271 -1.159 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.295 4.295 4 C 0.296 3.704 5 O -0.369 6.369 6 C -0.300 4.300 7 C 0.360 3.640 8 O -0.391 6.391 9 N -0.327 5.327 10 C -0.028 4.028 11 C -0.172 4.172 12 C -0.169 4.169 13 C 0.046 3.954 14 H 0.079 0.921 15 C 0.029 3.971 16 H 0.121 0.879 17 C -0.190 4.190 18 C 0.056 3.944 19 N -0.322 5.322 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.208 1.208 27 H -0.218 1.218 28 C 0.032 3.968 29 N -0.161 5.161 30 C -0.095 4.095 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.192 0.808 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.278 -2.517 -1.516 29.425 hybrid contribution 0.848 -0.209 0.569 1.043 sum -28.430 -2.726 -0.947 28.576 Atomic orbital electron populations 1.21196 0.88137 1.04981 1.04088 1.20258 0.94791 0.85055 0.94983 1.22233 0.96213 0.97193 1.13839 1.18153 0.88296 0.87765 0.76231 1.90819 1.70027 1.33346 1.42711 1.22531 0.94675 0.95104 1.17643 1.17562 0.85920 0.80811 0.79683 1.90814 1.66411 1.38986 1.42926 1.47519 1.07411 1.31471 1.46310 1.22201 0.95209 0.93395 0.91956 1.21926 0.98010 1.01946 0.95286 1.22113 0.92637 1.00657 1.01444 1.21364 0.86717 0.94912 0.92377 0.92144 1.21756 0.77451 0.99842 0.98030 0.87872 1.23108 1.00158 0.96407 0.99298 1.21157 0.89432 0.96810 0.87049 1.44706 1.06251 1.59764 1.21527 1.19017 0.85946 1.31687 0.98791 0.90439 1.24797 0.97678 0.99928 0.97859 1.69969 1.25347 1.36515 1.24817 0.86181 0.83487 0.77430 0.78940 1.21514 1.20809 1.21818 1.22486 0.81910 1.00355 0.91999 1.42566 1.05246 1.07129 1.61197 1.22568 0.97891 0.84447 1.04565 0.89314 0.88903 0.90108 0.83093 0.91306 0.90058 0.91509 0.91681 0.91887 0.92193 0.92390 0.92056 0.93244 0.93968 0.93753 0.80805 0.89862 0.88580 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.26 9.34 36.01 0.34 0.07 16 2 C 0.15 1.00 6.64 -82.13 -0.54 0.46 16 3 C -0.27 -2.85 9.57 -39.47 -0.38 -3.23 16 4 C 0.41 6.56 6.94 -34.68 -0.24 6.31 16 5 O -0.49 -10.36 16.98 -7.74 -0.13 -10.49 16 6 C -0.29 -4.15 5.41 -102.72 -0.56 -4.71 16 7 C 0.57 10.53 7.26 -12.58 -0.09 10.44 16 8 O -0.52 -12.12 15.65 -7.31 -0.11 -12.23 16 9 N -0.59 -9.76 2.73 -166.33 -0.45 -10.21 16 10 C 0.10 1.12 4.50 -3.64 -0.02 1.10 16 11 C -0.13 -1.74 6.11 -26.62 -0.16 -1.90 16 12 C -0.13 -2.25 5.10 -26.86 -0.14 -2.38 16 13 C 0.15 3.27 3.59 -66.35 -0.24 3.03 16 14 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 15 C 0.13 2.64 3.11 -67.29 -0.21 2.43 16 16 H 0.10 2.38 6.93 -51.93 -0.36 2.02 16 17 C -0.15 -2.91 6.08 -25.17 -0.15 -3.07 16 18 C 0.18 4.41 5.20 -2.89 -0.02 4.40 16 19 N -0.60 -15.24 2.91 -162.21 -0.47 -15.72 16 20 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 21 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 22 C -0.01 -0.18 5.47 -17.43 -0.10 -0.27 16 23 N -0.92 -27.18 10.40 55.49 0.58 -26.60 16 24 Si 0.91 22.48 29.56 -169.99 -5.03 17.46 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.16 1.39 7.58 -16.54 -0.13 1.27 16 29 N -0.47 -2.68 2.97 -119.75 -0.36 -3.03 16 30 C 0.05 0.04 10.11 59.84 0.60 0.65 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.09 0.16 7.98 -51.93 -0.41 -0.25 16 33 H 0.08 0.01 5.91 -51.93 -0.31 -0.30 16 34 H 0.15 1.37 8.01 -52.49 -0.42 0.94 16 35 H 0.07 0.69 7.42 -51.93 -0.39 0.30 16 36 H 0.08 0.75 4.40 -51.93 -0.23 0.52 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.99 6.81 -51.93 -0.35 0.64 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.36 7.33 -51.93 -0.38 0.98 16 44 H 0.04 1.12 7.61 -51.93 -0.39 0.72 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.18 1.08 5.98 -52.48 -0.31 0.76 16 47 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 48 H 0.10 -0.08 5.61 -51.93 -0.29 -0.37 16 49 H 0.09 -0.01 7.98 -51.93 -0.41 -0.42 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -40.17 377.05 -9.61 -49.78 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.14 Total: -2.75 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -2.18 Total: 8.12 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.71 Total: -55.57 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.25 Total: -22.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.17 -9.61 -49.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049539042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.592 kcal (2) G-P(sol) polarization free energy of solvation -40.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds