Wall clock time and date at job start Wed Apr 1 2020 06:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34858 * 119.10063 * 2 1 4 4 C 1.41673 * 119.33807 * 179.69564 * 3 2 1 5 5 O 1.22088 * 121.07134 * 180.29347 * 4 3 2 6 6 C 1.47096 * 117.86277 * 0.53486 * 4 3 2 7 7 C 1.47288 * 120.88123 * 179.78385 * 6 4 3 8 8 O 1.21618 * 120.00375 * 323.02569 * 7 6 4 9 9 N 1.34777 * 119.99856 * 143.03115 * 7 6 4 10 10 C 1.46790 * 119.57677 * 356.03313 * 9 7 6 11 11 C 1.53468 * 107.60250 * 232.06156 * 10 9 7 12 12 C 1.52738 * 108.43678 * 301.92834 * 11 10 9 13 13 C 1.53009 * 110.80132 * 63.77107 * 12 11 10 14 14 H 1.08996 * 111.38360 * 69.71129 * 13 12 11 15 15 C 1.45125 * 119.57426 * 176.05735 * 9 7 6 16 16 H 1.08998 * 109.96582 * 11.91950 * 15 9 7 17 17 C 1.54419 * 111.60966 * 248.64447 * 15 9 7 18 18 C 1.54548 * 102.36309 * 203.21138 * 17 15 9 19 19 N 1.47121 * 107.26323 * 22.02054 * 18 17 15 20 20 C 1.36938 * 125.76568 * 182.48027 * 19 18 17 21 21 H 1.07997 * 120.00245 * 183.89300 * 20 19 18 22 22 C 1.38820 * 119.99851 * 3.89056 * 20 19 18 23 23 N 1.31614 * 119.99674 * 351.48660 * 22 20 19 24 24 Si 1.86801 * 119.99935 * 171.48678 * 22 20 19 25 25 H 1.48506 * 109.46861 * 275.01383 * 24 22 20 26 26 H 1.48498 * 109.46936 * 35.01093 * 24 22 20 27 27 H 1.48492 * 109.47160 * 155.01240 * 24 22 20 28 28 C 1.37986 * 118.23651 * 359.50898 * 6 4 3 29 29 N 1.34349 * 120.37336 * 0.23046 * 28 6 4 30 30 C 1.46493 * 118.80705 * 180.02562 * 29 28 6 31 31 H 1.08992 * 109.47574 * 264.37620 * 1 2 3 32 32 H 1.09003 * 109.46945 * 24.37607 * 1 2 3 33 33 H 1.09004 * 109.47110 * 144.37285 * 1 2 3 34 34 H 1.07995 * 120.33308 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.83447 * 112.53763 * 10 9 7 36 36 H 1.08997 * 109.88990 * 351.61253 * 10 9 7 37 37 H 1.08999 * 109.64295 * 182.23916 * 11 10 9 38 38 H 1.09003 * 109.81278 * 61.70709 * 11 10 9 39 39 H 1.09007 * 109.20839 * 303.43019 * 12 11 10 40 40 H 1.09006 * 109.21439 * 184.11225 * 12 11 10 41 41 H 1.09005 * 110.81166 * 321.65230 * 17 15 9 42 42 H 1.08996 * 110.81510 * 84.97633 * 17 15 9 43 43 H 1.09001 * 109.98951 * 262.54422 * 18 17 15 44 44 H 1.08997 * 109.77218 * 141.37762 * 18 17 15 45 45 H 0.97003 * 119.99630 * 180.02562 * 23 22 20 46 46 H 1.08004 * 119.81587 * 180.25505 * 28 6 4 47 47 H 1.09000 * 109.47305 * 88.88644 * 30 29 28 48 48 H 1.09001 * 109.47353 * 208.88292 * 30 29 28 49 49 H 1.09003 * 109.47334 * 328.88084 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1842 0.0066 5 8 4.2053 2.2325 0.0121 6 6 4.2725 -0.1133 0.0010 7 6 5.7436 -0.1847 0.0025 8 8 6.3927 0.6293 -0.6261 9 7 6.3706 -1.1524 0.7004 10 6 5.5833 -2.0764 1.5257 11 6 6.1922 -2.0743 2.9344 12 6 7.6580 -2.4902 2.8277 13 6 8.4552 -1.4675 2.0155 14 1 8.5654 -0.5284 2.5575 15 6 7.8154 -1.2670 0.6268 16 1 8.2350 -0.3827 0.1472 17 6 8.2470 -2.5489 -0.1181 18 6 9.6742 -2.7835 0.4265 19 7 9.7711 -2.0795 1.7147 20 6 10.8898 -1.9985 2.5003 21 1 10.8402 -1.5091 3.4617 22 6 12.0876 -2.5456 2.0609 23 7 12.1131 -3.2852 0.9726 24 14 13.6630 -2.2320 3.0144 25 1 14.2565 -0.9421 2.5792 26 1 13.3590 -2.1720 4.4667 27 1 14.6259 -3.3323 2.7552 28 6 3.5077 -1.2618 0.0001 29 7 2.1664 -1.1848 -0.0004 30 6 1.3880 -2.4258 -0.0007 31 1 -0.3634 -0.1007 1.0226 32 1 -0.3633 0.9361 -0.4242 33 1 -0.3633 -0.8353 -0.5986 34 1 1.6137 2.1082 -0.0004 35 1 5.6302 -3.0804 1.1041 36 1 4.5468 -1.7423 1.5705 37 1 5.6556 -2.7818 3.5666 38 1 6.1253 -1.0749 3.3643 39 1 7.7202 -3.4630 2.3397 40 1 8.0837 -2.5639 3.8285 41 1 7.5907 -3.3823 0.1330 42 1 8.2652 -2.3834 -1.1953 43 1 10.4097 -2.3830 -0.2711 44 1 9.8420 -3.8504 0.5735 45 1 12.9501 -3.6678 0.6657 46 1 3.9900 -2.2282 0.0003 47 1 1.2115 -2.7443 1.0267 48 1 0.4328 -2.2555 -0.4974 49 1 1.9405 -3.2011 -0.5316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049539042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:52 Heat of formation + Delta-G solvation = -10.100796 kcal Electronic energy + Delta-G solvation = -31588.982488 eV Core-core repulsion = 27517.009183 eV Total energy + Delta-G solvation = -4071.973305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.45018 -41.33946 -39.52769 -38.76322 -36.85456 -34.73816 -34.02396 -33.78031 -33.35409 -30.92325 -29.97137 -28.92117 -27.65535 -26.50542 -26.14386 -24.76478 -23.56911 -22.88816 -21.96935 -21.49208 -19.75265 -19.17359 -18.84414 -18.25026 -17.59270 -17.22203 -16.86377 -16.74246 -16.55097 -16.12539 -15.84314 -15.51397 -15.12816 -15.01741 -14.96688 -14.82031 -14.40169 -14.14759 -14.08421 -13.83536 -13.81511 -13.73230 -13.51828 -13.28623 -13.11578 -12.82289 -12.65118 -12.61476 -12.45507 -12.35310 -12.26999 -12.06906 -11.94243 -11.65106 -11.56137 -11.19874 -11.10318 -10.69815 -10.42552 -10.31334 -9.64323 -9.02850 -8.89683 -7.87596 -5.20663 -0.15250 0.32570 1.42365 1.46905 1.47291 1.53228 1.69947 1.98119 2.48174 2.69721 3.26408 3.30600 3.42283 3.55475 3.62455 3.79576 3.82592 3.88546 3.99636 4.06405 4.08480 4.20708 4.29493 4.35823 4.49004 4.50575 4.53105 4.58230 4.65348 4.74992 4.76405 4.77889 4.83819 4.87327 4.92912 4.95369 5.04568 5.15095 5.21565 5.31952 5.35793 5.39508 5.55586 5.64026 5.65440 5.72753 5.74478 5.82673 6.16833 6.43743 7.07659 7.08118 7.23445 7.73493 8.39687 9.23143 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.002738 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.309708 B =10225.287633 C =10617.152559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.192 3.808 3 C -0.305 4.305 4 C 0.383 3.617 5 O -0.582 6.582 6 C -0.345 4.345 7 C 0.568 3.432 8 O -0.590 6.590 9 N -0.589 5.589 10 C 0.089 3.911 11 C -0.124 4.124 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.034 0.966 15 C 0.146 3.854 16 H 0.054 0.946 17 C -0.127 4.127 18 C 0.191 3.809 19 N -0.618 5.618 20 C -0.239 4.239 21 H 0.077 0.923 22 C -0.062 4.062 23 N -0.947 5.947 24 Si 0.974 3.026 25 H -0.292 1.292 26 H -0.268 1.268 27 H -0.290 1.290 28 C 0.213 3.787 29 N -0.454 5.454 30 C 0.028 3.972 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.004 0.996 44 H 0.021 0.979 45 H 0.248 0.752 46 H 0.216 0.784 47 H 0.111 0.889 48 H 0.123 0.877 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.904 -7.527 0.008 36.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 C -0.329 4.329 4 C 0.278 3.722 5 O -0.472 6.472 6 C -0.356 4.356 7 C 0.358 3.642 8 O -0.470 6.470 9 N -0.321 5.321 10 C -0.031 4.031 11 C -0.163 4.163 12 C -0.155 4.155 13 C 0.041 3.959 14 H 0.052 0.948 15 C 0.040 3.960 16 H 0.072 0.928 17 C -0.166 4.166 18 C 0.065 3.935 19 N -0.343 5.343 20 C -0.368 4.368 21 H 0.095 0.905 22 C -0.256 4.256 23 N -0.595 5.595 24 Si 0.802 3.198 25 H -0.220 1.220 26 H -0.193 1.193 27 H -0.217 1.217 28 C 0.080 3.920 29 N -0.137 5.137 30 C -0.110 4.110 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.172 0.828 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.039 0.961 45 H 0.057 0.943 46 H 0.232 0.768 47 H 0.130 0.870 48 H 0.141 0.859 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -35.187 -6.850 -0.303 35.849 hybrid contribution 2.417 0.984 0.226 2.619 sum -32.771 -5.866 -0.077 33.292 Atomic orbital electron populations 1.21431 0.83752 1.06800 1.06263 1.20850 0.97077 0.83859 0.89846 1.22070 0.93609 0.99645 1.17536 1.18978 0.90578 0.87502 0.75170 1.90762 1.71919 1.35887 1.48616 1.22006 0.92493 0.96688 1.24391 1.18270 0.87739 0.79696 0.78450 1.90762 1.68356 1.41748 1.46125 1.47521 1.05834 1.32123 1.46573 1.22689 0.95908 0.94162 0.90327 1.21909 0.94980 1.02353 0.97046 1.21872 0.95161 0.98942 0.99524 1.21552 0.85870 0.94880 0.93580 0.94770 1.21220 0.80041 0.98100 0.96635 0.92812 1.22914 0.97332 0.97190 0.99193 1.20872 0.91607 0.94932 0.86052 1.44948 1.07449 1.60277 1.21672 1.19341 0.87258 1.31044 0.99147 0.90473 1.25600 1.00596 1.00207 0.99163 1.70164 1.25546 1.37495 1.26314 0.85164 0.79516 0.76722 0.78375 1.21960 1.19280 1.21671 1.22813 0.82930 0.99569 0.86733 1.43242 1.04709 1.09112 1.56650 1.23204 0.98561 0.81934 1.07271 0.86831 0.88549 0.86671 0.82847 0.87339 0.86706 0.86755 0.93102 0.91675 0.93501 0.88388 0.91573 0.97789 0.96060 0.94316 0.76822 0.87019 0.85880 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.30 9.34 71.24 0.67 0.96 16 2 C 0.19 1.60 6.64 41.20 0.27 1.87 16 3 C -0.31 -6.29 9.57 22.34 0.21 -6.08 16 4 C 0.38 13.17 6.94 25.44 0.18 13.35 16 5 O -0.58 -28.04 16.98 6.42 0.11 -27.93 16 6 C -0.35 -9.86 5.41 -18.63 -0.10 -9.96 16 7 C 0.57 21.92 7.26 86.62 0.63 22.54 16 8 O -0.59 -30.72 15.65 7.94 0.12 -30.60 16 9 N -0.59 -19.15 2.73 -798.41 -2.18 -21.33 16 10 C 0.09 1.69 4.50 86.48 0.39 2.08 16 11 C -0.12 -2.79 6.11 30.66 0.19 -2.60 16 12 C -0.12 -3.88 5.10 30.51 0.16 -3.72 16 13 C 0.15 6.54 3.59 45.08 0.16 6.70 16 14 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 15 C 0.15 6.05 3.11 46.14 0.14 6.20 16 16 H 0.05 2.76 6.93 -2.39 -0.02 2.74 16 17 C -0.13 -4.95 6.08 31.60 0.19 -4.76 16 18 C 0.19 9.78 5.20 86.79 0.45 10.23 16 19 N -0.62 -33.11 2.91 -667.11 -1.94 -35.05 16 20 C -0.24 -13.97 10.28 84.04 0.86 -13.10 16 21 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 22 C -0.06 -3.68 5.47 84.86 0.46 -3.21 16 23 N -0.95 -58.42 10.40 21.65 0.23 -58.20 16 24 Si 0.97 47.71 29.56 68.60 2.03 49.73 16 25 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 C 0.21 2.63 7.58 84.25 0.64 3.27 16 29 N -0.45 -2.20 2.97 -532.78 -1.58 -3.78 16 30 C 0.03 -0.20 10.11 127.77 1.29 1.09 16 31 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.10 -0.14 7.98 -2.39 -0.02 -0.16 16 33 H 0.12 -0.95 5.91 -2.39 -0.01 -0.97 16 34 H 0.15 2.90 8.01 -2.91 -0.02 2.87 16 35 H 0.11 1.34 7.42 -2.39 -0.02 1.32 16 36 H 0.12 1.43 4.40 -2.39 -0.01 1.41 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 2.19 7.13 -2.38 -0.02 2.17 16 40 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.10 3.03 6.81 -2.38 -0.02 3.02 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.00 0.23 7.33 -2.39 -0.02 0.21 16 44 H 0.02 1.17 7.61 -2.39 -0.02 1.15 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.22 1.00 5.98 -2.91 -0.02 0.98 16 47 H 0.11 -1.18 8.14 -2.39 -0.02 -1.20 16 48 H 0.12 -1.39 5.61 -2.39 -0.01 -1.41 16 49 H 0.11 -1.12 7.98 -2.39 -0.02 -1.14 16 Total: -1.00 -108.08 377.05 4.55 -103.53 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: 0.97 Total: -1.23 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.80 Total: 24.86 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -5.48 Total: -118.37 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: 0.23 Total: -58.53 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -108.08 4.55 -103.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049539042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.429 kcal (2) G-P(sol) polarization free energy of solvation -108.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds