Wall clock time and date at job start Wed Apr 1 2020 06:42:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34865 * 119.09609 * 2 1
4 4 C 1.41670 * 119.33596 * 179.73767 * 3 2 1
5 5 O 1.22087 * 121.07189 * 180.25836 * 4 3 2
6 6 C 1.47102 * 117.86342 * 0.54836 * 4 3 2
7 7 C 1.47293 * 120.88214 * 179.73557 * 6 4 3
8 8 O 1.21618 * 119.99998 * 51.63846 * 7 6 4
9 9 N 1.34777 * 119.99730 * 231.64410 * 7 6 4
10 10 C 1.47695 * 122.25748 * 354.33257 * 9 7 6
11 11 C 1.52715 * 111.14367 * 127.46713 * 10 9 7
12 12 C 1.53875 * 111.46873 * 48.54614 * 11 10 9
13 13 C 1.51075 * 107.34788 * 303.10966 * 12 11 10
14 14 H 1.09002 * 108.73735 * 309.15259 * 13 12 11
15 15 C 1.45724 * 122.22519 * 174.30772 * 9 7 6
16 16 H 1.08997 * 111.64297 * 119.16236 * 15 9 7
17 17 C 1.53439 * 116.37465 * 350.11946 * 15 9 7
18 18 C 1.55464 * 101.67068 * 207.26695 * 17 15 9
19 19 N 1.45028 * 119.19818 * 183.88132 * 13 12 11
20 20 C 1.36934 * 126.56079 * 28.77829 * 19 13 12
21 21 H 1.08003 * 119.99617 * 0.02562 * 20 19 13
22 22 C 1.38806 * 120.00323 * 179.97438 * 20 19 13
23 23 N 1.31622 * 119.99712 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00395 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.46948 * 60.00152 * 24 22 20
26 26 H 1.48497 * 109.47424 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47012 * 300.00394 * 24 22 20
28 28 C 1.37986 * 118.23495 * 359.45604 * 6 4 3
29 29 N 1.34346 * 120.37262 * 0.27951 * 28 6 4
30 30 C 1.46504 * 118.80399 * 179.97438 * 29 28 6
31 31 H 1.09001 * 109.46567 * 263.58445 * 1 2 3
32 32 H 1.08998 * 109.47341 * 23.58207 * 1 2 3
33 33 H 1.08999 * 109.46812 * 143.58788 * 1 2 3
34 34 H 1.07992 * 120.33334 * 0.02562 * 3 2 1
35 35 H 1.08994 * 109.08145 * 7.05906 * 10 9 7
36 36 H 1.09008 * 109.15960 * 247.92219 * 10 9 7
37 37 H 1.09007 * 109.06626 * 288.05917 * 11 10 9
38 38 H 1.08991 * 109.07528 * 169.04211 * 11 10 9
39 39 H 1.09000 * 109.87861 * 62.57092 * 12 11 10
40 40 H 1.09001 * 109.88225 * 183.64995 * 12 11 10
41 41 H 1.09001 * 110.98459 * 89.16571 * 17 15 9
42 42 H 1.09004 * 110.98581 * 325.36520 * 17 15 9
43 43 H 1.09005 * 109.95920 * 263.22101 * 18 17 15
44 44 H 1.08995 * 109.99364 * 141.99734 * 18 17 15
45 45 H 0.97000 * 119.99657 * 179.97438 * 23 22 20
46 46 H 1.08006 * 119.81401 * 180.24774 * 28 6 4
47 47 H 1.08992 * 109.46881 * 96.43887 * 30 29 28
48 48 H 1.09000 * 109.46919 * 216.43634 * 30 29 28
49 49 H 1.08997 * 109.47049 * 336.43587 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1628 1.1785 0.0000
4 6 3.5795 1.1844 0.0057
5 8 4.2052 2.2327 0.0105
6 6 4.2725 -0.1132 -0.0011
7 6 5.7437 -0.1845 -0.0017
8 8 6.3828 0.4346 0.8273
9 7 6.3816 -0.9359 -0.9209
10 6 5.6561 -1.8028 -1.8714
11 6 6.0834 -1.5213 -3.3103
12 6 7.6157 -1.4931 -3.4474
13 6 8.1349 -0.4497 -2.4861
14 1 7.5838 0.4773 -2.6444
15 6 7.8336 -0.9468 -1.0438
16 1 8.2441 -1.9418 -0.8723
17 6 8.5940 0.1126 -0.2353
18 6 9.8802 0.2965 -1.0891
19 7 9.5537 -0.1497 -2.4661
20 6 10.4251 -0.2575 -3.5168
21 1 10.0709 -0.5951 -4.4796
22 6 11.7634 0.0682 -3.3449
23 7 12.1949 0.4801 -2.1716
24 14 12.9523 -0.0796 -4.7780
25 1 12.5069 0.8059 -5.8839
26 1 14.3117 0.3239 -4.3372
27 1 12.9835 -1.4864 -5.2523
28 6 3.5077 -1.2617 -0.0011
29 7 2.1665 -1.1846 -0.0006
30 6 1.3881 -2.4258 -0.0011
31 1 -0.3632 -0.1148 1.0213
32 1 -0.3634 0.9418 -0.4111
33 1 -0.3633 -0.8270 -0.6100
34 1 1.6136 2.1083 0.0004
35 1 4.5858 -1.6210 -1.7740
36 1 5.8638 -2.8463 -1.6342
37 1 5.6804 -0.5567 -3.6192
38 1 5.6820 -2.2992 -3.9597
39 1 8.0286 -2.4694 -3.1934
40 1 7.8918 -1.2270 -4.4678
41 1 8.8363 -0.2565 0.7613
42 1 8.0269 1.0418 -0.1785
43 1 10.6872 -0.3129 -0.6821
44 1 10.1747 1.3458 -1.0980
45 1 13.1302 0.7073 -2.0513
46 1 3.9901 -2.2280 -0.0019
47 1 1.0979 -2.6730 1.0200
48 1 0.4945 -2.2940 -0.6111
49 1 1.9930 -3.2338 -0.4126
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049539043.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:42:58
Heat of formation + Delta-G solvation = 18.217515 kcal
Electronic energy + Delta-G solvation = -31708.257017 eV
Core-core repulsion = 27637.511687 eV
Total energy + Delta-G solvation = -4070.745331 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-41.50170 -40.00659 -38.15126 -37.25787 -35.40233 -33.75283 -32.91392 -32.50144
-31.87215 -29.19831 -28.36818 -27.94423 -27.23515 -25.04781 -24.36429 -23.75953
-22.08734 -21.42280 -20.76997 -19.74555 -19.17117 -17.89619 -17.34323 -16.63878
-16.42327 -16.40543 -15.64785 -15.41374 -14.98047 -14.57301 -14.47973 -14.13875
-14.07178 -13.92252 -13.88528 -13.63172 -13.54610 -13.28112 -13.20583 -12.80144
-12.63316 -12.34665 -12.27014 -12.18854 -12.15337 -11.74608 -11.47818 -11.05335
-10.77222 -10.65043 -10.45841 -10.37081 -10.04476 -9.89348 -9.74903 -9.66593
-9.53029 -9.48445 -8.89339 -8.50064 -8.14431 -8.03641 -6.72909 -5.60843
-2.94962 0.80433 1.09527 2.05216 2.96628 3.26601 3.46090 3.50168
3.51983 3.68899 3.79311 4.07624 4.23648 4.38043 4.45343 4.56976
4.64709 4.75769 4.84392 4.87777 4.91039 5.04715 5.13556 5.25348
5.30895 5.44574 5.46484 5.48414 5.56427 5.67875 5.68763 5.83558
5.96365 6.07169 6.12135 6.21003 6.32029 6.35716 6.39562 6.48254
6.54073 6.66996 6.82172 6.91818 7.03407 7.31388 7.67708 7.76906
7.83395 7.94481 8.09605 8.34761 8.61099 9.28432 9.92353 10.61756
11.51141
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.021986 B = 0.002872 C = 0.002727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1273.249810 B = 9745.649552 C =10263.641438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.156 3.844
3 C -0.271 4.271
4 C 0.409 3.591
5 O -0.490 6.490
6 C -0.282 4.282
7 C 0.582 3.418
8 O -0.510 6.510
9 N -0.598 5.598
10 C 0.106 3.894
11 C -0.129 4.129
12 C -0.114 4.114
13 C 0.157 3.843
14 H 0.018 0.982
15 C 0.118 3.882
16 H 0.080 0.920
17 C -0.129 4.129
18 C 0.173 3.827
19 N -0.592 5.592
20 C -0.225 4.225
21 H 0.077 0.923
22 C -0.008 4.008
23 N -0.920 5.920
24 Si 0.910 3.090
25 H -0.286 1.286
26 H -0.291 1.291
27 H -0.286 1.286
28 C 0.157 3.843
29 N -0.474 5.474
30 C 0.050 3.950
31 H 0.087 0.913
32 H 0.092 0.908
33 H 0.080 0.920
34 H 0.151 0.849
35 H 0.074 0.926
36 H 0.065 0.935
37 H 0.063 0.937
38 H 0.070 0.930
39 H 0.063 0.937
40 H 0.066 0.934
41 H 0.062 0.938
42 H 0.079 0.921
43 H 0.056 0.944
44 H 0.039 0.961
45 H 0.253 0.747
46 H 0.169 0.831
47 H 0.080 0.920
48 H 0.093 0.907
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.417 -11.362 3.581 31.737
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.050 3.950
3 C -0.296 4.296
4 C 0.296 3.704
5 O -0.372 6.372
6 C -0.292 4.292
7 C 0.369 3.631
8 O -0.385 6.385
9 N -0.332 5.332
10 C -0.017 4.017
11 C -0.168 4.168
12 C -0.152 4.152
13 C 0.048 3.952
14 H 0.036 0.964
15 C 0.014 3.986
16 H 0.098 0.902
17 C -0.168 4.168
18 C 0.049 3.951
19 N -0.317 5.317
20 C -0.354 4.354
21 H 0.095 0.905
22 C -0.204 4.204
23 N -0.567 5.567
24 Si 0.741 3.259
25 H -0.213 1.213
26 H -0.217 1.217
27 H -0.213 1.213
28 C 0.028 3.972
29 N -0.162 5.162
30 C -0.091 4.091
31 H 0.106 0.894
32 H 0.111 0.889
33 H 0.098 0.902
34 H 0.169 0.831
35 H 0.093 0.907
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.089 0.911
39 H 0.082 0.918
40 H 0.085 0.915
41 H 0.080 0.920
42 H 0.097 0.903
43 H 0.074 0.926
44 H 0.057 0.943
45 H 0.063 0.937
46 H 0.186 0.814
47 H 0.099 0.901
48 H 0.111 0.889
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -28.599 -10.555 4.019 30.749
hybrid contribution 0.605 -0.265 -0.837 1.066
sum -27.994 -10.820 3.182 30.181
Atomic orbital electron populations
1.21174 0.88137 1.05017 1.03990 1.20232 0.94765 0.85016 0.94998
1.22215 0.96167 0.97206 1.13973 1.18165 0.88356 0.87704 0.76208
1.90830 1.70042 1.33406 1.42880 1.22610 0.94918 0.95209 1.16501
1.17403 0.85568 0.79079 0.81081 1.90815 1.66607 1.43549 1.37481
1.47896 1.07383 1.44632 1.33313 1.21814 0.96270 0.93832 0.89782
1.21895 0.97654 1.02151 0.95126 1.21409 0.92883 1.00029 1.00914
1.20770 0.87643 0.94893 0.91906 0.96433 1.22371 0.77404 0.99643
0.99161 0.90229 1.22932 0.97517 0.98511 0.97804 1.21737 0.91922
0.99194 0.82280 1.44068 1.02295 1.76931 1.08403 1.18934 0.88565
1.38551 0.89306 0.90474 1.24803 0.97017 1.01635 0.96981 1.69948
1.14749 1.50550 1.21438 0.86230 0.80503 0.77650 0.81541 1.21257
1.21651 1.21269 1.22128 0.81897 0.99859 0.93323 1.42503 1.05204
1.07051 1.61427 1.22504 0.97772 0.84473 1.04341 0.89422 0.88905
0.90163 0.83092 0.90738 0.91632 0.91795 0.91099 0.91789 0.91498
0.91950 0.90254 0.92556 0.94269 0.93709 0.81392 0.90129 0.88869
0.88871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.30 9.34 36.01 0.34 0.04 16
2 C 0.16 1.05 6.64 -82.13 -0.55 0.51 16
3 C -0.27 -2.98 9.57 -39.47 -0.38 -3.36 16
4 C 0.41 6.75 6.96 -34.68 -0.24 6.51 16
5 O -0.49 -10.74 17.38 4.74 0.08 -10.66 16
6 C -0.28 -4.13 5.23 -102.71 -0.54 -4.66 16
7 C 0.58 10.85 6.96 -12.58 -0.09 10.76 16
8 O -0.51 -11.78 13.89 5.16 0.07 -11.70 16
9 N -0.60 -10.14 2.91 -165.42 -0.48 -10.62 16
10 C 0.11 1.26 5.47 -3.53 -0.02 1.24 16
11 C -0.13 -1.70 5.93 -26.42 -0.16 -1.86 16
12 C -0.11 -2.01 5.45 -27.24 -0.15 -2.16 16
13 C 0.16 3.49 2.58 -68.36 -0.18 3.31 16
14 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16
15 C 0.12 2.40 3.32 -66.79 -0.22 2.18 16
16 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16
17 C -0.13 -3.01 4.93 -25.19 -0.12 -3.13 16
18 C 0.17 4.64 5.47 -1.70 -0.01 4.63 16
19 N -0.59 -15.92 3.35 -163.29 -0.55 -16.47 16
20 C -0.23 -6.42 9.94 -15.06 -0.15 -6.57 16
21 H 0.08 2.09 7.31 -52.48 -0.38 1.71 16
22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16
23 N -0.92 -28.14 10.46 55.49 0.58 -27.56 16
24 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16
25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
28 C 0.16 1.35 7.71 -16.54 -0.13 1.23 16
29 N -0.47 -2.74 2.97 -119.75 -0.36 -3.09 16
30 C 0.05 0.04 9.97 59.85 0.60 0.64 16
31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16
32 H 0.09 0.19 7.97 -51.93 -0.41 -0.22 16
33 H 0.08 0.02 6.03 -51.93 -0.31 -0.29 16
34 H 0.15 1.45 8.00 -52.49 -0.42 1.03 16
35 H 0.07 0.70 4.73 -51.93 -0.25 0.45 16
36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16
37 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16
38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16
40 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16
41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16
42 H 0.08 2.02 6.39 -51.93 -0.33 1.68 16
43 H 0.06 1.61 7.19 -51.93 -0.37 1.24 16
44 H 0.04 1.16 7.81 -51.93 -0.41 0.75 16
45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
46 H 0.17 0.97 6.99 -52.48 -0.37 0.60 16
47 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16
48 H 0.09 -0.08 5.97 -51.93 -0.31 -0.39 16
49 H 0.09 -0.05 7.85 -51.93 -0.41 -0.46 16
LS Contribution 378.18 15.07 5.70 5.70
Total: -1.00 -41.29 378.18 -9.36 -50.65
By element:
Atomic # 1 Polarization: 4.40 SS G_CDS: -7.30 Total: -2.90 kcal
Atomic # 6 Polarization: 11.07 SS G_CDS: -2.08 Total: 8.99 kcal
Atomic # 7 Polarization: -56.94 SS G_CDS: -0.80 Total: -57.74 kcal
Atomic # 8 Polarization: -22.52 SS G_CDS: 0.15 Total: -22.36 kcal
Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -41.29 -9.36 -50.65 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049539043.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.871 kcal
(2) G-P(sol) polarization free energy of solvation -41.291 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds