Wall clock time and date at job start Wed Apr 1 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34865 * 119.09609 * 2 1 4 4 C 1.41670 * 119.33596 * 179.73767 * 3 2 1 5 5 O 1.22087 * 121.07189 * 180.25836 * 4 3 2 6 6 C 1.47102 * 117.86342 * 0.54836 * 4 3 2 7 7 C 1.47293 * 120.88214 * 179.73557 * 6 4 3 8 8 O 1.21618 * 119.99998 * 51.63846 * 7 6 4 9 9 N 1.34777 * 119.99730 * 231.64410 * 7 6 4 10 10 C 1.47695 * 122.25748 * 354.33257 * 9 7 6 11 11 C 1.52715 * 111.14367 * 127.46713 * 10 9 7 12 12 C 1.53875 * 111.46873 * 48.54614 * 11 10 9 13 13 C 1.51075 * 107.34788 * 303.10966 * 12 11 10 14 14 H 1.09002 * 108.73735 * 309.15259 * 13 12 11 15 15 C 1.45724 * 122.22519 * 174.30772 * 9 7 6 16 16 H 1.08997 * 111.64297 * 119.16236 * 15 9 7 17 17 C 1.53439 * 116.37465 * 350.11946 * 15 9 7 18 18 C 1.55464 * 101.67068 * 207.26695 * 17 15 9 19 19 N 1.45028 * 119.19818 * 183.88132 * 13 12 11 20 20 C 1.36934 * 126.56079 * 28.77829 * 19 13 12 21 21 H 1.08003 * 119.99617 * 0.02562 * 20 19 13 22 22 C 1.38806 * 120.00323 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99712 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00395 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46948 * 60.00152 * 24 22 20 26 26 H 1.48497 * 109.47424 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47012 * 300.00394 * 24 22 20 28 28 C 1.37986 * 118.23495 * 359.45604 * 6 4 3 29 29 N 1.34346 * 120.37262 * 0.27951 * 28 6 4 30 30 C 1.46504 * 118.80399 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.46567 * 263.58445 * 1 2 3 32 32 H 1.08998 * 109.47341 * 23.58207 * 1 2 3 33 33 H 1.08999 * 109.46812 * 143.58788 * 1 2 3 34 34 H 1.07992 * 120.33334 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.08145 * 7.05906 * 10 9 7 36 36 H 1.09008 * 109.15960 * 247.92219 * 10 9 7 37 37 H 1.09007 * 109.06626 * 288.05917 * 11 10 9 38 38 H 1.08991 * 109.07528 * 169.04211 * 11 10 9 39 39 H 1.09000 * 109.87861 * 62.57092 * 12 11 10 40 40 H 1.09001 * 109.88225 * 183.64995 * 12 11 10 41 41 H 1.09001 * 110.98459 * 89.16571 * 17 15 9 42 42 H 1.09004 * 110.98581 * 325.36520 * 17 15 9 43 43 H 1.09005 * 109.95920 * 263.22101 * 18 17 15 44 44 H 1.08995 * 109.99364 * 141.99734 * 18 17 15 45 45 H 0.97000 * 119.99657 * 179.97438 * 23 22 20 46 46 H 1.08006 * 119.81401 * 180.24774 * 28 6 4 47 47 H 1.08992 * 109.46881 * 96.43887 * 30 29 28 48 48 H 1.09000 * 109.46919 * 216.43634 * 30 29 28 49 49 H 1.08997 * 109.47049 * 336.43587 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1844 0.0057 5 8 4.2052 2.2327 0.0105 6 6 4.2725 -0.1132 -0.0011 7 6 5.7437 -0.1845 -0.0017 8 8 6.3828 0.4346 0.8273 9 7 6.3816 -0.9359 -0.9209 10 6 5.6561 -1.8028 -1.8714 11 6 6.0834 -1.5213 -3.3103 12 6 7.6157 -1.4931 -3.4474 13 6 8.1349 -0.4497 -2.4861 14 1 7.5838 0.4773 -2.6444 15 6 7.8336 -0.9468 -1.0438 16 1 8.2441 -1.9418 -0.8723 17 6 8.5940 0.1126 -0.2353 18 6 9.8802 0.2965 -1.0891 19 7 9.5537 -0.1497 -2.4661 20 6 10.4251 -0.2575 -3.5168 21 1 10.0709 -0.5951 -4.4796 22 6 11.7634 0.0682 -3.3449 23 7 12.1949 0.4801 -2.1716 24 14 12.9523 -0.0796 -4.7780 25 1 12.5069 0.8059 -5.8839 26 1 14.3117 0.3239 -4.3372 27 1 12.9835 -1.4864 -5.2523 28 6 3.5077 -1.2617 -0.0011 29 7 2.1665 -1.1846 -0.0006 30 6 1.3881 -2.4258 -0.0011 31 1 -0.3632 -0.1148 1.0213 32 1 -0.3634 0.9418 -0.4111 33 1 -0.3633 -0.8270 -0.6100 34 1 1.6136 2.1083 0.0004 35 1 4.5858 -1.6210 -1.7740 36 1 5.8638 -2.8463 -1.6342 37 1 5.6804 -0.5567 -3.6192 38 1 5.6820 -2.2992 -3.9597 39 1 8.0286 -2.4694 -3.1934 40 1 7.8918 -1.2270 -4.4678 41 1 8.8363 -0.2565 0.7613 42 1 8.0269 1.0418 -0.1785 43 1 10.6872 -0.3129 -0.6821 44 1 10.1747 1.3458 -1.0980 45 1 13.1302 0.7073 -2.0513 46 1 3.9901 -2.2280 -0.0019 47 1 1.0979 -2.6730 1.0200 48 1 0.4945 -2.2940 -0.6111 49 1 1.9930 -3.2338 -0.4126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049539043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:58 Heat of formation + Delta-G solvation = 18.217515 kcal Electronic energy + Delta-G solvation = -31708.257017 eV Core-core repulsion = 27637.511687 eV Total energy + Delta-G solvation = -4070.745331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.50170 -40.00659 -38.15126 -37.25787 -35.40233 -33.75283 -32.91392 -32.50144 -31.87215 -29.19831 -28.36818 -27.94423 -27.23515 -25.04781 -24.36429 -23.75953 -22.08734 -21.42280 -20.76997 -19.74555 -19.17117 -17.89619 -17.34323 -16.63878 -16.42327 -16.40543 -15.64785 -15.41374 -14.98047 -14.57301 -14.47973 -14.13875 -14.07178 -13.92252 -13.88528 -13.63172 -13.54610 -13.28112 -13.20583 -12.80144 -12.63316 -12.34665 -12.27014 -12.18854 -12.15337 -11.74608 -11.47818 -11.05335 -10.77222 -10.65043 -10.45841 -10.37081 -10.04476 -9.89348 -9.74903 -9.66593 -9.53029 -9.48445 -8.89339 -8.50064 -8.14431 -8.03641 -6.72909 -5.60843 -2.94962 0.80433 1.09527 2.05216 2.96628 3.26601 3.46090 3.50168 3.51983 3.68899 3.79311 4.07624 4.23648 4.38043 4.45343 4.56976 4.64709 4.75769 4.84392 4.87777 4.91039 5.04715 5.13556 5.25348 5.30895 5.44574 5.46484 5.48414 5.56427 5.67875 5.68763 5.83558 5.96365 6.07169 6.12135 6.21003 6.32029 6.35716 6.39562 6.48254 6.54073 6.66996 6.82172 6.91818 7.03407 7.31388 7.67708 7.76906 7.83395 7.94481 8.09605 8.34761 8.61099 9.28432 9.92353 10.61756 11.51141 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021986 B = 0.002872 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.249810 B = 9745.649552 C =10263.641438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 C -0.271 4.271 4 C 0.409 3.591 5 O -0.490 6.490 6 C -0.282 4.282 7 C 0.582 3.418 8 O -0.510 6.510 9 N -0.598 5.598 10 C 0.106 3.894 11 C -0.129 4.129 12 C -0.114 4.114 13 C 0.157 3.843 14 H 0.018 0.982 15 C 0.118 3.882 16 H 0.080 0.920 17 C -0.129 4.129 18 C 0.173 3.827 19 N -0.592 5.592 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.157 3.843 29 N -0.474 5.474 30 C 0.050 3.950 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.253 0.747 46 H 0.169 0.831 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.417 -11.362 3.581 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.296 3.704 5 O -0.372 6.372 6 C -0.292 4.292 7 C 0.369 3.631 8 O -0.385 6.385 9 N -0.332 5.332 10 C -0.017 4.017 11 C -0.168 4.168 12 C -0.152 4.152 13 C 0.048 3.952 14 H 0.036 0.964 15 C 0.014 3.986 16 H 0.098 0.902 17 C -0.168 4.168 18 C 0.049 3.951 19 N -0.317 5.317 20 C -0.354 4.354 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.028 3.972 29 N -0.162 5.162 30 C -0.091 4.091 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.186 0.814 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.599 -10.555 4.019 30.749 hybrid contribution 0.605 -0.265 -0.837 1.066 sum -27.994 -10.820 3.182 30.181 Atomic orbital electron populations 1.21174 0.88137 1.05017 1.03990 1.20232 0.94765 0.85016 0.94998 1.22215 0.96167 0.97206 1.13973 1.18165 0.88356 0.87704 0.76208 1.90830 1.70042 1.33406 1.42880 1.22610 0.94918 0.95209 1.16501 1.17403 0.85568 0.79079 0.81081 1.90815 1.66607 1.43549 1.37481 1.47896 1.07383 1.44632 1.33313 1.21814 0.96270 0.93832 0.89782 1.21895 0.97654 1.02151 0.95126 1.21409 0.92883 1.00029 1.00914 1.20770 0.87643 0.94893 0.91906 0.96433 1.22371 0.77404 0.99643 0.99161 0.90229 1.22932 0.97517 0.98511 0.97804 1.21737 0.91922 0.99194 0.82280 1.44068 1.02295 1.76931 1.08403 1.18934 0.88565 1.38551 0.89306 0.90474 1.24803 0.97017 1.01635 0.96981 1.69948 1.14749 1.50550 1.21438 0.86230 0.80503 0.77650 0.81541 1.21257 1.21651 1.21269 1.22128 0.81897 0.99859 0.93323 1.42503 1.05204 1.07051 1.61427 1.22504 0.97772 0.84473 1.04341 0.89422 0.88905 0.90163 0.83092 0.90738 0.91632 0.91795 0.91099 0.91789 0.91498 0.91950 0.90254 0.92556 0.94269 0.93709 0.81392 0.90129 0.88869 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.30 9.34 36.01 0.34 0.04 16 2 C 0.16 1.05 6.64 -82.13 -0.55 0.51 16 3 C -0.27 -2.98 9.57 -39.47 -0.38 -3.36 16 4 C 0.41 6.75 6.96 -34.68 -0.24 6.51 16 5 O -0.49 -10.74 17.38 4.74 0.08 -10.66 16 6 C -0.28 -4.13 5.23 -102.71 -0.54 -4.66 16 7 C 0.58 10.85 6.96 -12.58 -0.09 10.76 16 8 O -0.51 -11.78 13.89 5.16 0.07 -11.70 16 9 N -0.60 -10.14 2.91 -165.42 -0.48 -10.62 16 10 C 0.11 1.26 5.47 -3.53 -0.02 1.24 16 11 C -0.13 -1.70 5.93 -26.42 -0.16 -1.86 16 12 C -0.11 -2.01 5.45 -27.24 -0.15 -2.16 16 13 C 0.16 3.49 2.58 -68.36 -0.18 3.31 16 14 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 15 C 0.12 2.40 3.32 -66.79 -0.22 2.18 16 16 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 17 C -0.13 -3.01 4.93 -25.19 -0.12 -3.13 16 18 C 0.17 4.64 5.47 -1.70 -0.01 4.63 16 19 N -0.59 -15.92 3.35 -163.29 -0.55 -16.47 16 20 C -0.23 -6.42 9.94 -15.06 -0.15 -6.57 16 21 H 0.08 2.09 7.31 -52.48 -0.38 1.71 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -28.14 10.46 55.49 0.58 -27.56 16 24 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.16 1.35 7.71 -16.54 -0.13 1.23 16 29 N -0.47 -2.74 2.97 -119.75 -0.36 -3.09 16 30 C 0.05 0.04 9.97 59.85 0.60 0.64 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.19 7.97 -51.93 -0.41 -0.22 16 33 H 0.08 0.02 6.03 -51.93 -0.31 -0.29 16 34 H 0.15 1.45 8.00 -52.49 -0.42 1.03 16 35 H 0.07 0.70 4.73 -51.93 -0.25 0.45 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 2.02 6.39 -51.93 -0.33 1.68 16 43 H 0.06 1.61 7.19 -51.93 -0.37 1.24 16 44 H 0.04 1.16 7.81 -51.93 -0.41 0.75 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.17 0.97 6.99 -52.48 -0.37 0.60 16 47 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 48 H 0.09 -0.08 5.97 -51.93 -0.31 -0.39 16 49 H 0.09 -0.05 7.85 -51.93 -0.41 -0.46 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -41.29 378.18 -9.36 -50.65 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.30 Total: -2.90 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.08 Total: 8.99 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.80 Total: -57.74 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.15 Total: -22.36 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -41.29 -9.36 -50.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049539043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.871 kcal (2) G-P(sol) polarization free energy of solvation -41.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds