Wall clock time and date at job start Wed Apr 1 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34865 * 119.09609 * 2 1 4 4 C 1.41670 * 119.33596 * 179.73767 * 3 2 1 5 5 O 1.22087 * 121.07189 * 180.25836 * 4 3 2 6 6 C 1.47102 * 117.86342 * 0.54836 * 4 3 2 7 7 C 1.47293 * 120.88214 * 179.73557 * 6 4 3 8 8 O 1.21618 * 119.99998 * 51.63846 * 7 6 4 9 9 N 1.34777 * 119.99730 * 231.64410 * 7 6 4 10 10 C 1.47695 * 122.25748 * 354.33257 * 9 7 6 11 11 C 1.52715 * 111.14367 * 127.46713 * 10 9 7 12 12 C 1.53875 * 111.46873 * 48.54614 * 11 10 9 13 13 C 1.51075 * 107.34788 * 303.10966 * 12 11 10 14 14 H 1.09002 * 108.73735 * 309.15259 * 13 12 11 15 15 C 1.45724 * 122.22519 * 174.30772 * 9 7 6 16 16 H 1.08997 * 111.64297 * 119.16236 * 15 9 7 17 17 C 1.53439 * 116.37465 * 350.11946 * 15 9 7 18 18 C 1.55464 * 101.67068 * 207.26695 * 17 15 9 19 19 N 1.45028 * 119.19818 * 183.88132 * 13 12 11 20 20 C 1.36934 * 126.56079 * 28.77829 * 19 13 12 21 21 H 1.08003 * 119.99617 * 0.02562 * 20 19 13 22 22 C 1.38806 * 120.00323 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99712 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00395 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46948 * 60.00152 * 24 22 20 26 26 H 1.48497 * 109.47424 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47012 * 300.00394 * 24 22 20 28 28 C 1.37986 * 118.23495 * 359.45604 * 6 4 3 29 29 N 1.34346 * 120.37262 * 0.27951 * 28 6 4 30 30 C 1.46504 * 118.80399 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.46567 * 263.58445 * 1 2 3 32 32 H 1.08998 * 109.47341 * 23.58207 * 1 2 3 33 33 H 1.08999 * 109.46812 * 143.58788 * 1 2 3 34 34 H 1.07992 * 120.33334 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.08145 * 7.05906 * 10 9 7 36 36 H 1.09008 * 109.15960 * 247.92219 * 10 9 7 37 37 H 1.09007 * 109.06626 * 288.05917 * 11 10 9 38 38 H 1.08991 * 109.07528 * 169.04211 * 11 10 9 39 39 H 1.09000 * 109.87861 * 62.57092 * 12 11 10 40 40 H 1.09001 * 109.88225 * 183.64995 * 12 11 10 41 41 H 1.09001 * 110.98459 * 89.16571 * 17 15 9 42 42 H 1.09004 * 110.98581 * 325.36520 * 17 15 9 43 43 H 1.09005 * 109.95920 * 263.22101 * 18 17 15 44 44 H 1.08995 * 109.99364 * 141.99734 * 18 17 15 45 45 H 0.97000 * 119.99657 * 179.97438 * 23 22 20 46 46 H 1.08006 * 119.81401 * 180.24774 * 28 6 4 47 47 H 1.08992 * 109.46881 * 96.43887 * 30 29 28 48 48 H 1.09000 * 109.46919 * 216.43634 * 30 29 28 49 49 H 1.08997 * 109.47049 * 336.43587 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1844 0.0057 5 8 4.2052 2.2327 0.0105 6 6 4.2725 -0.1132 -0.0011 7 6 5.7437 -0.1845 -0.0017 8 8 6.3828 0.4346 0.8273 9 7 6.3816 -0.9359 -0.9209 10 6 5.6561 -1.8028 -1.8714 11 6 6.0834 -1.5213 -3.3103 12 6 7.6157 -1.4931 -3.4474 13 6 8.1349 -0.4497 -2.4861 14 1 7.5838 0.4773 -2.6444 15 6 7.8336 -0.9468 -1.0438 16 1 8.2441 -1.9418 -0.8723 17 6 8.5940 0.1126 -0.2353 18 6 9.8802 0.2965 -1.0891 19 7 9.5537 -0.1497 -2.4661 20 6 10.4251 -0.2575 -3.5168 21 1 10.0709 -0.5951 -4.4796 22 6 11.7634 0.0682 -3.3449 23 7 12.1949 0.4801 -2.1716 24 14 12.9523 -0.0796 -4.7780 25 1 12.5069 0.8059 -5.8839 26 1 14.3117 0.3239 -4.3372 27 1 12.9835 -1.4864 -5.2523 28 6 3.5077 -1.2617 -0.0011 29 7 2.1665 -1.1846 -0.0006 30 6 1.3881 -2.4258 -0.0011 31 1 -0.3632 -0.1148 1.0213 32 1 -0.3634 0.9418 -0.4111 33 1 -0.3633 -0.8270 -0.6100 34 1 1.6136 2.1083 0.0004 35 1 4.5858 -1.6210 -1.7740 36 1 5.8638 -2.8463 -1.6342 37 1 5.6804 -0.5567 -3.6192 38 1 5.6820 -2.2992 -3.9597 39 1 8.0286 -2.4694 -3.1934 40 1 7.8918 -1.2270 -4.4678 41 1 8.8363 -0.2565 0.7613 42 1 8.0269 1.0418 -0.1785 43 1 10.6872 -0.3129 -0.6821 44 1 10.1747 1.3458 -1.0980 45 1 13.1302 0.7073 -2.0513 46 1 3.9901 -2.2280 -0.0019 47 1 1.0979 -2.6730 1.0200 48 1 0.4945 -2.2940 -0.6111 49 1 1.9930 -3.2338 -0.4126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049539043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:56 Heat of formation + Delta-G solvation = -13.194791 kcal Electronic energy + Delta-G solvation = -31709.619157 eV Core-core repulsion = 27637.511687 eV Total energy + Delta-G solvation = -4072.107471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.36399 -41.37447 -39.40355 -38.71799 -36.97946 -34.66069 -34.17923 -33.90214 -33.34067 -30.92310 -29.80993 -28.96875 -27.65944 -26.44584 -26.20765 -24.78394 -23.20896 -22.87524 -22.18178 -21.51751 -20.47756 -18.96267 -18.45949 -18.09572 -17.44795 -17.20643 -17.03676 -16.65502 -16.53760 -16.19424 -15.74548 -15.52736 -15.43753 -15.02499 -14.95427 -14.85614 -14.34927 -14.19888 -14.05988 -13.93590 -13.78621 -13.71768 -13.44525 -13.28141 -13.17044 -12.92922 -12.68447 -12.63252 -12.50486 -12.25193 -12.13865 -11.99431 -11.80018 -11.74351 -11.59543 -11.47575 -10.86948 -10.73170 -10.42505 -10.23802 -9.56892 -9.02884 -8.94170 -7.84797 -5.23192 -0.07350 0.31825 1.43955 1.47245 1.49313 1.55408 1.63786 2.05177 2.49858 2.65816 3.28638 3.31225 3.33326 3.52574 3.63225 3.81342 3.84101 3.94871 3.96255 4.06779 4.21288 4.22953 4.31115 4.32809 4.48570 4.51478 4.51850 4.55385 4.62787 4.72790 4.75383 4.76529 4.87182 4.88995 4.91792 5.00243 5.07222 5.11761 5.19667 5.26448 5.32543 5.42550 5.46608 5.54977 5.59842 5.69864 5.75757 5.83093 6.15258 6.51544 7.02425 7.06541 7.25883 7.72858 8.44471 9.27344 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021986 B = 0.002872 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.249810 B = 9745.649552 C =10263.641438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.194 3.806 3 C -0.309 4.309 4 C 0.382 3.618 5 O -0.590 6.590 6 C -0.341 4.341 7 C 0.575 3.425 8 O -0.576 6.576 9 N -0.598 5.598 10 C 0.098 3.902 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.151 3.849 14 H -0.021 1.021 15 C 0.136 3.864 16 H 0.097 0.903 17 C -0.115 4.115 18 C 0.186 3.814 19 N -0.610 5.610 20 C -0.236 4.236 21 H 0.092 0.908 22 C -0.072 4.072 23 N -0.957 5.957 24 Si 0.985 3.015 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.211 3.789 29 N -0.454 5.454 30 C 0.032 3.968 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.034 0.966 44 H -0.009 1.009 45 H 0.247 0.753 46 H 0.216 0.784 47 H 0.102 0.898 48 H 0.122 0.878 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.667 -17.398 1.863 38.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 C -0.332 4.332 4 C 0.277 3.723 5 O -0.481 6.481 6 C -0.351 4.351 7 C 0.365 3.635 8 O -0.456 6.456 9 N -0.330 5.330 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.146 4.146 13 C 0.043 3.957 14 H -0.004 1.004 15 C 0.030 3.970 16 H 0.115 0.885 17 C -0.153 4.153 18 C 0.060 3.940 19 N -0.335 5.335 20 C -0.364 4.364 21 H 0.109 0.891 22 C -0.265 4.265 23 N -0.606 5.606 24 Si 0.812 3.188 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.192 1.192 28 C 0.077 3.923 29 N -0.137 5.137 30 C -0.106 4.106 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.169 0.831 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.141 0.859 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.010 0.990 45 H 0.056 0.944 46 H 0.232 0.768 47 H 0.120 0.880 48 H 0.141 0.859 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -33.989 -16.696 2.253 37.936 hybrid contribution 1.976 1.478 -0.284 2.484 sum -32.013 -15.218 1.970 35.501 Atomic orbital electron populations 1.21407 0.83749 1.06908 1.06085 1.20817 0.97054 0.83854 0.89735 1.22040 0.93604 0.99658 1.17947 1.19010 0.90651 0.87510 0.75148 1.90770 1.71988 1.36116 1.49181 1.22063 0.92824 0.96684 1.23545 1.18091 0.87426 0.77744 0.80220 1.90759 1.68510 1.45943 1.40346 1.47990 1.05823 1.45216 1.34016 1.22298 0.97443 0.94881 0.87573 1.21905 0.93770 1.03172 0.97135 1.21391 0.96313 0.98377 0.98519 1.20944 0.84624 0.95002 0.95121 1.00366 1.21993 0.79990 0.98671 0.96306 0.88534 1.22622 0.96058 0.98731 0.97911 1.21402 0.92982 0.95804 0.83764 1.44340 1.04295 1.76992 1.07872 1.19418 0.89039 1.37724 0.90247 0.89060 1.25792 0.99043 1.01780 0.99856 1.70202 1.14590 1.51989 1.23856 0.85059 0.77279 0.78434 0.77989 1.20563 1.22353 1.19218 1.22567 0.82817 0.99266 0.87609 1.43203 1.04762 1.08998 1.56764 1.23149 0.98628 0.82040 1.06765 0.87197 0.88596 0.86422 0.83099 0.87506 0.87105 0.93666 0.85904 0.90425 0.92636 0.91459 0.93393 0.94806 0.99048 0.94425 0.76803 0.87979 0.85938 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.18 9.34 71.24 0.67 0.84 16 2 C 0.19 1.81 6.64 41.21 0.27 2.08 16 3 C -0.31 -6.86 9.57 22.34 0.21 -6.65 16 4 C 0.38 13.74 6.96 25.45 0.18 13.92 16 5 O -0.59 -29.75 17.38 -5.50 -0.10 -29.84 16 6 C -0.34 -10.03 5.23 -18.63 -0.10 -10.12 16 7 C 0.58 22.53 6.96 86.62 0.60 23.13 16 8 O -0.58 -29.38 13.89 -3.99 -0.06 -29.44 16 9 N -0.60 -20.06 2.91 -795.52 -2.31 -22.37 16 10 C 0.10 1.90 5.47 86.06 0.47 2.37 16 11 C -0.12 -2.74 5.93 30.79 0.18 -2.55 16 12 C -0.11 -3.63 5.45 30.26 0.16 -3.47 16 13 C 0.15 6.99 2.58 45.50 0.12 7.11 16 14 H -0.02 -1.12 8.04 -2.39 -0.02 -1.14 16 15 C 0.14 5.67 3.32 46.14 0.15 5.82 16 16 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 17 C -0.11 -5.86 4.93 31.59 0.16 -5.71 16 18 C 0.19 10.93 5.47 86.86 0.48 11.40 16 19 N -0.61 -34.73 3.35 -670.52 -2.25 -36.98 16 20 C -0.24 -13.89 9.94 84.03 0.84 -13.06 16 21 H 0.09 4.99 7.31 -2.91 -0.02 4.97 16 22 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 23 N -0.96 -62.13 10.46 21.65 0.23 -61.90 16 24 Si 0.99 47.81 29.55 68.60 2.03 49.84 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.21 2.64 7.71 84.25 0.65 3.29 16 29 N -0.45 -2.41 2.97 -532.77 -1.58 -3.99 16 30 C 0.03 -0.23 9.97 127.77 1.27 1.04 16 31 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.10 -0.05 7.97 -2.39 -0.02 -0.07 16 33 H 0.12 -0.93 6.03 -2.39 -0.01 -0.95 16 34 H 0.15 3.14 8.00 -2.91 -0.02 3.12 16 35 H 0.11 1.37 4.73 -2.39 -0.01 1.36 16 36 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 2.43 8.12 -2.39 -0.02 2.41 16 40 H 0.05 1.98 7.70 -2.39 -0.02 1.97 16 41 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.05 2.75 6.39 -2.39 -0.02 2.74 16 43 H 0.03 2.11 7.19 -2.38 -0.02 2.09 16 44 H -0.01 -0.58 7.81 -2.39 -0.02 -0.60 16 45 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.22 0.80 6.99 -2.91 -0.02 0.78 16 47 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H 0.12 -1.42 5.97 -2.39 -0.01 -1.44 16 49 H 0.12 -1.37 7.85 -2.39 -0.02 -1.39 16 Total: -1.00 -112.27 378.18 3.70 -108.57 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 0.96 Total: 0.54 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.78 Total: 25.57 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.92 Total: -125.24 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -0.15 Total: -59.28 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -112.27 3.70 -108.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049539043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.373 kcal (2) G-P(sol) polarization free energy of solvation -112.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds