Wall clock time and date at job start Wed Apr 1 2020 06:42:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34865 * 119.09609 * 2 1
4 4 C 1.41670 * 119.33596 * 179.73767 * 3 2 1
5 5 O 1.22087 * 121.07189 * 180.25836 * 4 3 2
6 6 C 1.47102 * 117.86342 * 0.54836 * 4 3 2
7 7 C 1.47293 * 120.88214 * 179.73557 * 6 4 3
8 8 O 1.21618 * 119.99998 * 51.63846 * 7 6 4
9 9 N 1.34777 * 119.99730 * 231.64410 * 7 6 4
10 10 C 1.47695 * 122.25748 * 354.33257 * 9 7 6
11 11 C 1.52715 * 111.14367 * 127.46713 * 10 9 7
12 12 C 1.53875 * 111.46873 * 48.54614 * 11 10 9
13 13 C 1.51075 * 107.34788 * 303.10966 * 12 11 10
14 14 H 1.09002 * 108.73735 * 309.15259 * 13 12 11
15 15 C 1.45724 * 122.22519 * 174.30772 * 9 7 6
16 16 H 1.08997 * 111.64297 * 119.16236 * 15 9 7
17 17 C 1.53439 * 116.37465 * 350.11946 * 15 9 7
18 18 C 1.55464 * 101.67068 * 207.26695 * 17 15 9
19 19 N 1.45028 * 119.19818 * 183.88132 * 13 12 11
20 20 C 1.36934 * 126.56079 * 28.77829 * 19 13 12
21 21 H 1.08003 * 119.99617 * 0.02562 * 20 19 13
22 22 C 1.38806 * 120.00323 * 179.97438 * 20 19 13
23 23 N 1.31622 * 119.99712 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00395 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.46948 * 60.00152 * 24 22 20
26 26 H 1.48497 * 109.47424 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47012 * 300.00394 * 24 22 20
28 28 C 1.37986 * 118.23495 * 359.45604 * 6 4 3
29 29 N 1.34346 * 120.37262 * 0.27951 * 28 6 4
30 30 C 1.46504 * 118.80399 * 179.97438 * 29 28 6
31 31 H 1.09001 * 109.46567 * 263.58445 * 1 2 3
32 32 H 1.08998 * 109.47341 * 23.58207 * 1 2 3
33 33 H 1.08999 * 109.46812 * 143.58788 * 1 2 3
34 34 H 1.07992 * 120.33334 * 0.02562 * 3 2 1
35 35 H 1.08994 * 109.08145 * 7.05906 * 10 9 7
36 36 H 1.09008 * 109.15960 * 247.92219 * 10 9 7
37 37 H 1.09007 * 109.06626 * 288.05917 * 11 10 9
38 38 H 1.08991 * 109.07528 * 169.04211 * 11 10 9
39 39 H 1.09000 * 109.87861 * 62.57092 * 12 11 10
40 40 H 1.09001 * 109.88225 * 183.64995 * 12 11 10
41 41 H 1.09001 * 110.98459 * 89.16571 * 17 15 9
42 42 H 1.09004 * 110.98581 * 325.36520 * 17 15 9
43 43 H 1.09005 * 109.95920 * 263.22101 * 18 17 15
44 44 H 1.08995 * 109.99364 * 141.99734 * 18 17 15
45 45 H 0.97000 * 119.99657 * 179.97438 * 23 22 20
46 46 H 1.08006 * 119.81401 * 180.24774 * 28 6 4
47 47 H 1.08992 * 109.46881 * 96.43887 * 30 29 28
48 48 H 1.09000 * 109.46919 * 216.43634 * 30 29 28
49 49 H 1.08997 * 109.47049 * 336.43587 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1628 1.1785 0.0000
4 6 3.5795 1.1844 0.0057
5 8 4.2052 2.2327 0.0105
6 6 4.2725 -0.1132 -0.0011
7 6 5.7437 -0.1845 -0.0017
8 8 6.3828 0.4346 0.8273
9 7 6.3816 -0.9359 -0.9209
10 6 5.6561 -1.8028 -1.8714
11 6 6.0834 -1.5213 -3.3103
12 6 7.6157 -1.4931 -3.4474
13 6 8.1349 -0.4497 -2.4861
14 1 7.5838 0.4773 -2.6444
15 6 7.8336 -0.9468 -1.0438
16 1 8.2441 -1.9418 -0.8723
17 6 8.5940 0.1126 -0.2353
18 6 9.8802 0.2965 -1.0891
19 7 9.5537 -0.1497 -2.4661
20 6 10.4251 -0.2575 -3.5168
21 1 10.0709 -0.5951 -4.4796
22 6 11.7634 0.0682 -3.3449
23 7 12.1949 0.4801 -2.1716
24 14 12.9523 -0.0796 -4.7780
25 1 12.5069 0.8059 -5.8839
26 1 14.3117 0.3239 -4.3372
27 1 12.9835 -1.4864 -5.2523
28 6 3.5077 -1.2617 -0.0011
29 7 2.1665 -1.1846 -0.0006
30 6 1.3881 -2.4258 -0.0011
31 1 -0.3632 -0.1148 1.0213
32 1 -0.3634 0.9418 -0.4111
33 1 -0.3633 -0.8270 -0.6100
34 1 1.6136 2.1083 0.0004
35 1 4.5858 -1.6210 -1.7740
36 1 5.8638 -2.8463 -1.6342
37 1 5.6804 -0.5567 -3.6192
38 1 5.6820 -2.2992 -3.9597
39 1 8.0286 -2.4694 -3.1934
40 1 7.8918 -1.2270 -4.4678
41 1 8.8363 -0.2565 0.7613
42 1 8.0269 1.0418 -0.1785
43 1 10.6872 -0.3129 -0.6821
44 1 10.1747 1.3458 -1.0980
45 1 13.1302 0.7073 -2.0513
46 1 3.9901 -2.2280 -0.0019
47 1 1.0979 -2.6730 1.0200
48 1 0.4945 -2.2940 -0.6111
49 1 1.9930 -3.2338 -0.4126
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049539043.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:42:56
Heat of formation + Delta-G solvation = -13.194791 kcal
Electronic energy + Delta-G solvation = -31709.619157 eV
Core-core repulsion = 27637.511687 eV
Total energy + Delta-G solvation = -4072.107471 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.79 seconds
Orbital eigenvalues (eV)
-42.36399 -41.37447 -39.40355 -38.71799 -36.97946 -34.66069 -34.17923 -33.90214
-33.34067 -30.92310 -29.80993 -28.96875 -27.65944 -26.44584 -26.20765 -24.78394
-23.20896 -22.87524 -22.18178 -21.51751 -20.47756 -18.96267 -18.45949 -18.09572
-17.44795 -17.20643 -17.03676 -16.65502 -16.53760 -16.19424 -15.74548 -15.52736
-15.43753 -15.02499 -14.95427 -14.85614 -14.34927 -14.19888 -14.05988 -13.93590
-13.78621 -13.71768 -13.44525 -13.28141 -13.17044 -12.92922 -12.68447 -12.63252
-12.50486 -12.25193 -12.13865 -11.99431 -11.80018 -11.74351 -11.59543 -11.47575
-10.86948 -10.73170 -10.42505 -10.23802 -9.56892 -9.02884 -8.94170 -7.84797
-5.23192 -0.07350 0.31825 1.43955 1.47245 1.49313 1.55408 1.63786
2.05177 2.49858 2.65816 3.28638 3.31225 3.33326 3.52574 3.63225
3.81342 3.84101 3.94871 3.96255 4.06779 4.21288 4.22953 4.31115
4.32809 4.48570 4.51478 4.51850 4.55385 4.62787 4.72790 4.75383
4.76529 4.87182 4.88995 4.91792 5.00243 5.07222 5.11761 5.19667
5.26448 5.32543 5.42550 5.46608 5.54977 5.59842 5.69864 5.75757
5.83093 6.15258 6.51544 7.02425 7.06541 7.25883 7.72858 8.44471
9.27344
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.021986 B = 0.002872 C = 0.002727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1273.249810 B = 9745.649552 C =10263.641438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.194 3.806
3 C -0.309 4.309
4 C 0.382 3.618
5 O -0.590 6.590
6 C -0.341 4.341
7 C 0.575 3.425
8 O -0.576 6.576
9 N -0.598 5.598
10 C 0.098 3.902
11 C -0.121 4.121
12 C -0.108 4.108
13 C 0.151 3.849
14 H -0.021 1.021
15 C 0.136 3.864
16 H 0.097 0.903
17 C -0.115 4.115
18 C 0.186 3.814
19 N -0.610 5.610
20 C -0.236 4.236
21 H 0.092 0.908
22 C -0.072 4.072
23 N -0.957 5.957
24 Si 0.985 3.015
25 H -0.279 1.279
26 H -0.297 1.297
27 H -0.267 1.267
28 C 0.211 3.789
29 N -0.454 5.454
30 C 0.032 3.968
31 H 0.110 0.890
32 H 0.095 0.905
33 H 0.118 0.882
34 H 0.151 0.849
35 H 0.107 0.893
36 H 0.111 0.889
37 H 0.044 0.956
38 H 0.123 0.877
39 H 0.077 0.923
40 H 0.055 0.945
41 H 0.067 0.933
42 H 0.047 0.953
43 H 0.034 0.966
44 H -0.009 1.009
45 H 0.247 0.753
46 H 0.216 0.784
47 H 0.102 0.898
48 H 0.122 0.878
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -34.667 -17.398 1.863 38.832
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.085 3.915
3 C -0.332 4.332
4 C 0.277 3.723
5 O -0.481 6.481
6 C -0.351 4.351
7 C 0.365 3.635
8 O -0.456 6.456
9 N -0.330 5.330
10 C -0.022 4.022
11 C -0.160 4.160
12 C -0.146 4.146
13 C 0.043 3.957
14 H -0.004 1.004
15 C 0.030 3.970
16 H 0.115 0.885
17 C -0.153 4.153
18 C 0.060 3.940
19 N -0.335 5.335
20 C -0.364 4.364
21 H 0.109 0.891
22 C -0.265 4.265
23 N -0.606 5.606
24 Si 0.812 3.188
25 H -0.206 1.206
26 H -0.224 1.224
27 H -0.192 1.192
28 C 0.077 3.923
29 N -0.137 5.137
30 C -0.106 4.106
31 H 0.128 0.872
32 H 0.114 0.886
33 H 0.136 0.864
34 H 0.169 0.831
35 H 0.125 0.875
36 H 0.129 0.871
37 H 0.063 0.937
38 H 0.141 0.859
39 H 0.096 0.904
40 H 0.074 0.926
41 H 0.085 0.915
42 H 0.066 0.934
43 H 0.052 0.948
44 H 0.010 0.990
45 H 0.056 0.944
46 H 0.232 0.768
47 H 0.120 0.880
48 H 0.141 0.859
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -33.989 -16.696 2.253 37.936
hybrid contribution 1.976 1.478 -0.284 2.484
sum -32.013 -15.218 1.970 35.501
Atomic orbital electron populations
1.21407 0.83749 1.06908 1.06085 1.20817 0.97054 0.83854 0.89735
1.22040 0.93604 0.99658 1.17947 1.19010 0.90651 0.87510 0.75148
1.90770 1.71988 1.36116 1.49181 1.22063 0.92824 0.96684 1.23545
1.18091 0.87426 0.77744 0.80220 1.90759 1.68510 1.45943 1.40346
1.47990 1.05823 1.45216 1.34016 1.22298 0.97443 0.94881 0.87573
1.21905 0.93770 1.03172 0.97135 1.21391 0.96313 0.98377 0.98519
1.20944 0.84624 0.95002 0.95121 1.00366 1.21993 0.79990 0.98671
0.96306 0.88534 1.22622 0.96058 0.98731 0.97911 1.21402 0.92982
0.95804 0.83764 1.44340 1.04295 1.76992 1.07872 1.19418 0.89039
1.37724 0.90247 0.89060 1.25792 0.99043 1.01780 0.99856 1.70202
1.14590 1.51989 1.23856 0.85059 0.77279 0.78434 0.77989 1.20563
1.22353 1.19218 1.22567 0.82817 0.99266 0.87609 1.43203 1.04762
1.08998 1.56764 1.23149 0.98628 0.82040 1.06765 0.87197 0.88596
0.86422 0.83099 0.87506 0.87105 0.93666 0.85904 0.90425 0.92636
0.91459 0.93393 0.94806 0.99048 0.94425 0.76803 0.87979 0.85938
0.85997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 0.18 9.34 71.24 0.67 0.84 16
2 C 0.19 1.81 6.64 41.21 0.27 2.08 16
3 C -0.31 -6.86 9.57 22.34 0.21 -6.65 16
4 C 0.38 13.74 6.96 25.45 0.18 13.92 16
5 O -0.59 -29.75 17.38 -5.50 -0.10 -29.84 16
6 C -0.34 -10.03 5.23 -18.63 -0.10 -10.12 16
7 C 0.58 22.53 6.96 86.62 0.60 23.13 16
8 O -0.58 -29.38 13.89 -3.99 -0.06 -29.44 16
9 N -0.60 -20.06 2.91 -795.52 -2.31 -22.37 16
10 C 0.10 1.90 5.47 86.06 0.47 2.37 16
11 C -0.12 -2.74 5.93 30.79 0.18 -2.55 16
12 C -0.11 -3.63 5.45 30.26 0.16 -3.47 16
13 C 0.15 6.99 2.58 45.50 0.12 7.11 16
14 H -0.02 -1.12 8.04 -2.39 -0.02 -1.14 16
15 C 0.14 5.67 3.32 46.14 0.15 5.82 16
16 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16
17 C -0.11 -5.86 4.93 31.59 0.16 -5.71 16
18 C 0.19 10.93 5.47 86.86 0.48 11.40 16
19 N -0.61 -34.73 3.35 -670.52 -2.25 -36.98 16
20 C -0.24 -13.89 9.94 84.03 0.84 -13.06 16
21 H 0.09 4.99 7.31 -2.91 -0.02 4.97 16
22 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16
23 N -0.96 -62.13 10.46 21.65 0.23 -61.90 16
24 Si 0.99 47.81 29.55 68.60 2.03 49.84 16
25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16
26 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16
27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
28 C 0.21 2.64 7.71 84.25 0.65 3.29 16
29 N -0.45 -2.41 2.97 -532.77 -1.58 -3.99 16
30 C 0.03 -0.23 9.97 127.77 1.27 1.04 16
31 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16
32 H 0.10 -0.05 7.97 -2.39 -0.02 -0.07 16
33 H 0.12 -0.93 6.03 -2.39 -0.01 -0.95 16
34 H 0.15 3.14 8.00 -2.91 -0.02 3.12 16
35 H 0.11 1.37 4.73 -2.39 -0.01 1.36 16
36 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16
37 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16
38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16
39 H 0.08 2.43 8.12 -2.39 -0.02 2.41 16
40 H 0.05 1.98 7.70 -2.39 -0.02 1.97 16
41 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16
42 H 0.05 2.75 6.39 -2.39 -0.02 2.74 16
43 H 0.03 2.11 7.19 -2.38 -0.02 2.09 16
44 H -0.01 -0.58 7.81 -2.39 -0.02 -0.60 16
45 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16
46 H 0.22 0.80 6.99 -2.91 -0.02 0.78 16
47 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16
48 H 0.12 -1.42 5.97 -2.39 -0.01 -1.44 16
49 H 0.12 -1.37 7.85 -2.39 -0.02 -1.39 16
Total: -1.00 -112.27 378.18 3.70 -108.57
By element:
Atomic # 1 Polarization: -0.42 SS G_CDS: 0.96 Total: 0.54 kcal
Atomic # 6 Polarization: 18.79 SS G_CDS: 6.78 Total: 25.57 kcal
Atomic # 7 Polarization: -119.33 SS G_CDS: -5.92 Total: -125.24 kcal
Atomic # 8 Polarization: -59.13 SS G_CDS: -0.15 Total: -59.28 kcal
Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal
Total: -112.27 3.70 -108.57 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049539043.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.373 kcal
(2) G-P(sol) polarization free energy of solvation -112.272 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.568 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.79 seconds