Wall clock time and date at job start Wed Apr 1 2020 05:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35927 * 116.99829 * 2 1 4 4 C 1.38842 * 120.40655 * 0.02562 * 3 2 1 5 5 N 1.31882 * 121.00067 * 180.02562 * 4 3 2 6 6 C 1.31686 * 121.94100 * 0.02562 * 5 4 3 7 7 C 1.39525 * 120.68686 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.52620 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00023 * 235.15521 * 8 7 6 10 10 N 1.34775 * 120.00009 * 55.15680 * 8 7 6 11 11 C 1.46798 * 119.57857 * 356.02148 * 10 8 7 12 12 C 1.51414 * 107.78123 * 128.38469 * 11 10 8 13 13 C 1.52736 * 109.50860 * 57.42355 * 12 11 10 14 14 C 1.53016 * 110.76678 * 297.08177 * 13 12 11 15 15 H 1.09002 * 111.38450 * 290.29977 * 14 13 12 16 16 C 1.45123 * 119.57850 * 176.00302 * 10 8 7 17 17 H 1.08997 * 109.96906 * 348.06931 * 16 10 8 18 18 C 1.54418 * 111.60812 * 111.35614 * 16 10 8 19 19 C 1.54571 * 102.44895 * 156.58319 * 18 16 10 20 20 N 1.48203 * 107.11580 * 168.09362 * 14 13 12 21 21 C 1.36938 * 125.76677 * 89.11405 * 20 14 13 22 22 H 1.07997 * 120.00259 * 0.02562 * 21 20 14 23 23 C 1.38810 * 120.00081 * 180.02562 * 21 20 14 24 24 N 1.31618 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47344 * 60.00091 * 25 23 21 27 27 H 1.48501 * 109.46827 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47066 * 299.99675 * 25 23 21 29 29 C 1.38848 * 120.40240 * 180.33085 * 3 2 1 30 30 C 1.50694 * 120.88022 * 359.97438 * 29 3 2 31 31 H 1.08992 * 109.47297 * 59.99767 * 1 2 3 32 32 H 1.09004 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46802 * 299.99887 * 1 2 3 34 34 H 1.07999 * 119.50447 * 0.03005 * 4 3 2 35 35 H 1.08002 * 119.65390 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.83587 * 247.47018 * 11 10 8 37 37 H 1.09001 * 109.83072 * 8.35737 * 11 10 8 38 38 H 1.08999 * 108.39434 * 297.84011 * 12 11 10 39 39 H 1.08995 * 109.82206 * 177.87007 * 12 11 10 40 40 H 1.09004 * 109.20993 * 176.76660 * 13 12 11 41 41 H 1.09003 * 109.21540 * 57.40096 * 13 12 11 42 42 H 1.09001 * 110.81317 * 274.82224 * 18 16 10 43 43 H 1.09003 * 110.81039 * 38.34792 * 18 16 10 44 44 H 1.08993 * 109.88628 * 97.73366 * 19 18 16 45 45 H 1.09000 * 109.89013 * 218.75941 * 19 18 16 46 46 H 0.97006 * 120.00103 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.47344 * 264.75688 * 30 29 3 48 48 H 1.09003 * 109.47873 * 24.75911 * 30 29 3 49 49 H 1.09001 * 109.47337 * 144.76029 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6892 -0.0015 7 6 4.0198 2.5636 -0.0032 8 6 5.4911 2.7104 -0.0054 9 8 6.1542 2.1725 -0.8706 10 7 6.0969 3.4405 0.9518 11 6 5.2825 4.1578 1.9404 12 6 5.7938 3.7877 3.3167 13 6 7.2771 4.1366 3.4206 14 6 8.0980 3.3203 2.4200 15 1 8.1322 2.2672 2.6995 16 6 7.5460 3.5073 0.9923 17 1 7.9720 2.7565 0.3267 18 6 8.0608 4.9165 0.6269 19 6 9.4532 4.9469 1.2975 20 7 9.4542 3.9165 2.3791 21 6 10.5047 3.5718 3.1871 22 1 10.3812 2.8023 3.9347 23 6 11.7285 4.2115 3.0451 24 7 11.8792 5.1489 2.1336 25 14 13.1618 3.7407 4.1468 26 1 13.4835 2.3040 3.9537 27 1 14.3464 4.5651 3.7971 28 1 12.7946 3.9795 5.5658 29 6 3.4321 1.2936 -0.0069 30 6 4.2809 0.0485 -0.0140 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 0.2197 2.3226 0.0014 35 1 3.6366 4.6749 -0.0023 36 1 5.3848 5.2330 1.7937 37 1 4.2367 3.8685 1.8378 38 1 5.6590 2.7152 3.4568 39 1 5.2351 4.3327 4.0774 40 1 7.6262 3.9219 4.4307 41 1 7.4113 5.1983 3.2130 42 1 8.1489 5.0286 -0.4537 43 1 7.4125 5.6862 1.0457 44 1 10.2234 4.7104 0.5635 45 1 9.6379 5.9328 1.7241 46 1 12.7343 5.5962 2.0347 47 1 4.5684 -0.2011 1.0074 48 1 3.7124 -0.7766 -0.4432 49 1 5.1760 0.2223 -0.6111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049546990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:47 Heat of formation + Delta-G solvation = 3.146176 kcal Electronic energy + Delta-G solvation = -31495.158869 eV Core-core repulsion = 27423.759996 eV Total energy + Delta-G solvation = -4071.398873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.40169 -40.17836 -38.52347 -37.76671 -35.30365 -34.01505 -32.50669 -32.35029 -30.97306 -29.05637 -28.34088 -28.06205 -27.86630 -25.25622 -24.31365 -23.53793 -22.72959 -21.91719 -20.56033 -20.04090 -18.59667 -17.98851 -17.75597 -16.91102 -16.76573 -16.47419 -16.24797 -15.79672 -14.97062 -14.75718 -14.54192 -14.26586 -14.18106 -14.06034 -13.73063 -13.45584 -13.24007 -13.05018 -13.00065 -12.81977 -12.41537 -12.37459 -12.10931 -12.01982 -11.88733 -11.83882 -11.38240 -11.05927 -10.98026 -10.79827 -10.64842 -10.55510 -10.35570 -10.12711 -9.99433 -9.68085 -9.60359 -9.59208 -9.41739 -8.74713 -8.65845 -8.35595 -6.87150 -5.72319 -3.05346 0.50016 0.91869 2.49450 2.79278 3.09850 3.40887 3.42404 3.45423 3.46412 4.06285 4.19912 4.35486 4.46395 4.48111 4.57638 4.70284 4.82476 4.93574 4.98296 5.09209 5.14552 5.27600 5.29684 5.33521 5.48706 5.49702 5.53390 5.53476 5.61600 5.68650 5.82301 5.89408 5.95102 5.99006 6.08681 6.16711 6.18486 6.28691 6.32609 6.48568 6.56354 6.70682 6.78622 6.91789 7.03720 7.46655 7.51351 7.54943 7.56421 7.78258 8.15600 8.20844 9.15904 9.78039 10.46201 11.40632 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.002647 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.680785 B =10574.664719 C =10755.449477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.071 3.929 4 C 0.032 3.968 5 N -0.453 5.453 6 C 0.097 3.903 7 C -0.136 4.136 8 C 0.562 3.438 9 O -0.527 6.527 10 N -0.581 5.581 11 C 0.100 3.900 12 C -0.134 4.134 13 C -0.128 4.128 14 C 0.155 3.845 15 H 0.058 0.942 16 C 0.131 3.869 17 H 0.103 0.897 18 C -0.150 4.150 19 C 0.177 3.823 20 N -0.598 5.598 21 C -0.224 4.224 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.025 4.025 30 C -0.124 4.124 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.253 0.747 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.213 -5.756 -2.724 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.023 3.977 4 C -0.125 4.125 5 N -0.162 5.162 6 C -0.062 4.062 7 C -0.141 4.141 8 C 0.348 3.652 9 O -0.404 6.404 10 N -0.311 5.311 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.169 4.169 14 C 0.046 3.954 15 H 0.076 0.924 16 C 0.027 3.973 17 H 0.121 0.879 18 C -0.189 4.189 19 C 0.053 3.947 20 N -0.323 5.323 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.033 4.033 30 C -0.180 4.180 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.989 -5.426 -3.145 24.795 hybrid contribution 0.919 -0.648 0.669 1.308 sum -23.070 -6.073 -2.475 23.985 Atomic orbital electron populations 1.23147 0.77924 1.04508 1.01594 1.86098 1.21565 1.25569 1.88572 1.19704 0.92215 0.86039 0.99709 1.23015 1.00621 0.87083 1.01815 1.67550 1.11719 1.25925 1.11044 1.22863 0.88437 0.98213 0.96654 1.20760 0.95224 0.93898 1.04254 1.18019 0.86220 0.79017 0.81976 1.90785 1.65293 1.47919 1.36444 1.47597 1.07258 1.47567 1.28713 1.21690 0.94740 0.97079 0.88782 1.21564 0.98357 1.01669 0.95651 1.22115 0.92144 1.01487 1.01114 1.21323 0.86877 0.96052 0.91148 0.92415 1.21848 0.76897 0.99190 0.99371 0.87883 1.23087 0.99857 0.95571 1.00422 1.21539 0.90224 0.93001 0.89974 1.45181 1.05884 1.41813 1.39399 1.18953 0.88379 1.16778 1.11140 0.90428 1.24781 0.97670 0.98745 0.99128 1.69913 1.24148 1.27327 1.35451 0.86213 0.82027 0.77681 0.79905 1.21180 1.21636 1.21228 1.19680 0.90863 0.95506 0.97296 1.20882 1.00083 0.93486 1.03574 0.92350 0.87772 0.92309 0.82193 0.81770 0.90875 0.89862 0.92057 0.91141 0.92022 0.91737 0.91779 0.92068 0.92943 0.93816 0.93663 0.90428 0.90413 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.78 9.58 -19.51 -0.19 -2.97 16 3 C 0.07 0.75 6.68 -39.13 -0.26 0.49 16 4 C 0.03 0.31 10.21 -17.31 -0.18 0.13 16 5 N -0.45 -5.12 10.34 -12.80 -0.13 -5.25 16 6 C 0.10 1.12 8.61 -17.13 -0.15 0.97 16 7 C -0.14 -1.77 4.79 -104.84 -0.50 -2.27 16 8 C 0.56 8.71 6.62 -12.32 -0.08 8.63 16 9 O -0.53 -9.89 14.65 5.32 0.08 -9.81 16 10 N -0.58 -8.73 2.73 -167.35 -0.46 -9.18 16 11 C 0.10 1.21 5.17 -4.68 -0.02 1.19 16 12 C -0.13 -1.72 5.96 -27.67 -0.16 -1.89 16 13 C -0.13 -2.18 5.13 -26.86 -0.14 -2.32 16 14 C 0.15 3.07 3.54 -66.35 -0.23 2.84 16 15 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.13 2.39 3.09 -67.29 -0.21 2.18 16 17 H 0.10 2.12 6.99 -51.93 -0.36 1.76 16 18 C -0.15 -2.80 6.08 -25.16 -0.15 -2.95 16 19 C 0.18 4.18 5.29 -1.61 -0.01 4.17 16 20 N -0.60 -14.69 2.99 -160.35 -0.48 -15.16 16 21 C -0.22 -6.09 10.31 -15.06 -0.16 -6.25 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.76 10.52 55.49 0.58 -26.18 16 25 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 C -0.02 -0.30 5.96 -103.76 -0.62 -0.92 16 30 C -0.12 -1.47 9.44 36.00 0.34 -1.13 16 31 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.21 7.67 -51.92 -0.40 -0.18 16 34 H 0.16 1.04 6.30 -52.49 -0.33 0.71 16 35 H 0.17 1.64 7.43 -52.49 -0.39 1.25 16 36 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 37 H 0.08 0.89 4.76 -51.93 -0.25 0.64 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.17 7.15 -51.93 -0.37 0.80 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.04 6.83 -51.93 -0.35 0.68 16 44 H 0.05 1.39 7.39 -51.93 -0.38 1.01 16 45 H 0.04 1.13 7.68 -51.93 -0.40 0.73 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 49 H 0.09 1.30 6.11 -51.93 -0.32 0.98 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -32.15 378.01 -8.80 -40.95 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.24 Total: 1.31 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.64 Total: 3.67 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.49 Total: -55.78 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.11 Total: -12.78 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.15 -8.80 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049546990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.094 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds