Wall clock time and date at job start Wed Apr 1 2020 05:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35927 * 116.99829 * 2 1 4 4 C 1.38842 * 120.40655 * 0.02562 * 3 2 1 5 5 N 1.31882 * 121.00067 * 180.02562 * 4 3 2 6 6 C 1.31686 * 121.94100 * 0.02562 * 5 4 3 7 7 C 1.39525 * 120.68686 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.52620 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00023 * 235.15521 * 8 7 6 10 10 N 1.34775 * 120.00009 * 55.15680 * 8 7 6 11 11 C 1.46798 * 119.57857 * 356.02148 * 10 8 7 12 12 C 1.51414 * 107.78123 * 128.38469 * 11 10 8 13 13 C 1.52736 * 109.50860 * 57.42355 * 12 11 10 14 14 C 1.53016 * 110.76678 * 297.08177 * 13 12 11 15 15 H 1.09002 * 111.38450 * 290.29977 * 14 13 12 16 16 C 1.45123 * 119.57850 * 176.00302 * 10 8 7 17 17 H 1.08997 * 109.96906 * 348.06931 * 16 10 8 18 18 C 1.54418 * 111.60812 * 111.35614 * 16 10 8 19 19 C 1.54571 * 102.44895 * 156.58319 * 18 16 10 20 20 N 1.48203 * 107.11580 * 168.09362 * 14 13 12 21 21 C 1.36938 * 125.76677 * 89.11405 * 20 14 13 22 22 H 1.07997 * 120.00259 * 0.02562 * 21 20 14 23 23 C 1.38810 * 120.00081 * 180.02562 * 21 20 14 24 24 N 1.31618 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47344 * 60.00091 * 25 23 21 27 27 H 1.48501 * 109.46827 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47066 * 299.99675 * 25 23 21 29 29 C 1.38848 * 120.40240 * 180.33085 * 3 2 1 30 30 C 1.50694 * 120.88022 * 359.97438 * 29 3 2 31 31 H 1.08992 * 109.47297 * 59.99767 * 1 2 3 32 32 H 1.09004 * 109.47210 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46802 * 299.99887 * 1 2 3 34 34 H 1.07999 * 119.50447 * 0.03005 * 4 3 2 35 35 H 1.08002 * 119.65390 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.83587 * 247.47018 * 11 10 8 37 37 H 1.09001 * 109.83072 * 8.35737 * 11 10 8 38 38 H 1.08999 * 108.39434 * 297.84011 * 12 11 10 39 39 H 1.08995 * 109.82206 * 177.87007 * 12 11 10 40 40 H 1.09004 * 109.20993 * 176.76660 * 13 12 11 41 41 H 1.09003 * 109.21540 * 57.40096 * 13 12 11 42 42 H 1.09001 * 110.81317 * 274.82224 * 18 16 10 43 43 H 1.09003 * 110.81039 * 38.34792 * 18 16 10 44 44 H 1.08993 * 109.88628 * 97.73366 * 19 18 16 45 45 H 1.09000 * 109.89013 * 218.75941 * 19 18 16 46 46 H 0.97006 * 120.00103 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.47344 * 264.75688 * 30 29 3 48 48 H 1.09003 * 109.47873 * 24.75911 * 30 29 3 49 49 H 1.09001 * 109.47337 * 144.76029 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6892 -0.0015 7 6 4.0198 2.5636 -0.0032 8 6 5.4911 2.7104 -0.0054 9 8 6.1542 2.1725 -0.8706 10 7 6.0969 3.4405 0.9518 11 6 5.2825 4.1578 1.9404 12 6 5.7938 3.7877 3.3167 13 6 7.2771 4.1366 3.4206 14 6 8.0980 3.3203 2.4200 15 1 8.1322 2.2672 2.6995 16 6 7.5460 3.5073 0.9923 17 1 7.9720 2.7565 0.3267 18 6 8.0608 4.9165 0.6269 19 6 9.4532 4.9469 1.2975 20 7 9.4542 3.9165 2.3791 21 6 10.5047 3.5718 3.1871 22 1 10.3812 2.8023 3.9347 23 6 11.7285 4.2115 3.0451 24 7 11.8792 5.1489 2.1336 25 14 13.1618 3.7407 4.1468 26 1 13.4835 2.3040 3.9537 27 1 14.3464 4.5651 3.7971 28 1 12.7946 3.9795 5.5658 29 6 3.4321 1.2936 -0.0069 30 6 4.2809 0.0485 -0.0140 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 0.2197 2.3226 0.0014 35 1 3.6366 4.6749 -0.0023 36 1 5.3848 5.2330 1.7937 37 1 4.2367 3.8685 1.8378 38 1 5.6590 2.7152 3.4568 39 1 5.2351 4.3327 4.0774 40 1 7.6262 3.9219 4.4307 41 1 7.4113 5.1983 3.2130 42 1 8.1489 5.0286 -0.4537 43 1 7.4125 5.6862 1.0457 44 1 10.2234 4.7104 0.5635 45 1 9.6379 5.9328 1.7241 46 1 12.7343 5.5962 2.0347 47 1 4.5684 -0.2011 1.0074 48 1 3.7124 -0.7766 -0.4432 49 1 5.1760 0.2223 -0.6111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049546990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:46 Heat of formation + Delta-G solvation = -17.143092 kcal Electronic energy + Delta-G solvation = -31496.038678 eV Core-core repulsion = 27423.759996 eV Total energy + Delta-G solvation = -4072.278682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.37478 -41.29334 -39.61107 -38.83785 -36.81505 -34.91318 -34.21127 -33.81699 -32.02236 -30.76106 -29.77061 -28.94888 -28.47130 -26.66270 -26.02655 -24.58923 -23.70431 -23.11509 -22.03695 -21.58658 -19.75440 -19.15716 -18.74238 -18.56920 -17.76176 -17.34315 -17.00226 -16.88729 -16.75312 -16.18136 -15.91165 -15.46079 -15.25953 -15.09046 -14.93984 -14.76822 -14.39310 -14.20658 -13.99174 -13.89177 -13.82030 -13.64908 -13.47706 -13.12199 -12.97072 -12.81638 -12.74177 -12.60790 -12.40527 -12.32549 -12.29585 -12.10833 -11.94314 -11.69734 -11.48849 -11.31227 -11.20035 -10.72879 -10.57063 -10.42265 -9.70399 -9.48149 -8.89008 -7.84421 -5.18641 -0.37146 0.08504 1.39711 1.46004 1.48963 1.54855 1.76896 2.24427 2.50304 2.56430 3.19847 3.35169 3.42651 3.48310 3.49858 3.60034 3.82820 3.86818 3.97120 4.03348 4.06345 4.14339 4.17195 4.35083 4.38693 4.43959 4.50730 4.55134 4.56830 4.59815 4.63331 4.66064 4.75517 4.80668 4.82941 4.97008 5.02241 5.04900 5.09171 5.16947 5.32335 5.34515 5.38686 5.52685 5.57462 5.62991 5.72226 6.15533 6.16195 6.27704 6.73260 6.96523 7.05996 7.72897 8.42364 9.27416 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.002647 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.680785 B =10574.664719 C =10755.449477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.076 3.924 4 C 0.043 3.957 5 N -0.460 5.460 6 C 0.099 3.901 7 C -0.148 4.148 8 C 0.564 3.436 9 O -0.568 6.568 10 N -0.578 5.578 11 C 0.098 3.902 12 C -0.123 4.123 13 C -0.117 4.117 14 C 0.151 3.849 15 H 0.047 0.953 16 C 0.147 3.853 17 H 0.073 0.927 18 C -0.132 4.132 19 C 0.188 3.812 20 N -0.619 5.619 21 C -0.232 4.232 22 H 0.082 0.918 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.976 3.024 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.275 1.275 29 C -0.043 4.043 30 C -0.119 4.119 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.195 0.805 35 H 0.180 0.820 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.011 0.989 45 H 0.016 0.984 46 H 0.246 0.754 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.214 -5.905 -1.711 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.028 3.972 4 C -0.115 4.115 5 N -0.169 5.169 6 C -0.059 4.059 7 C -0.153 4.153 8 C 0.352 3.648 9 O -0.448 6.448 10 N -0.308 5.308 11 C -0.023 4.023 12 C -0.162 4.162 13 C -0.157 4.157 14 C 0.043 3.957 15 H 0.065 0.935 16 C 0.042 3.958 17 H 0.091 0.909 18 C -0.171 4.171 19 C 0.063 3.937 20 N -0.344 5.344 21 C -0.361 4.361 22 H 0.100 0.900 23 C -0.259 4.259 24 N -0.601 5.601 25 Si 0.804 3.196 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.201 1.201 29 C -0.052 4.052 30 C -0.175 4.175 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.212 0.788 35 H 0.197 0.803 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.030 0.970 45 H 0.034 0.966 46 H 0.056 0.944 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.060 -5.589 -2.104 28.688 hybrid contribution 2.015 -0.728 0.329 2.168 sum -26.044 -6.318 -1.776 26.859 Atomic orbital electron populations 1.23516 0.75497 1.06303 1.02963 1.86097 1.24031 1.24881 1.88175 1.19679 0.91524 0.87047 0.98923 1.23561 1.02132 0.86180 0.99632 1.67654 1.11326 1.26599 1.11353 1.23031 0.88506 0.98199 0.96212 1.20500 0.93233 0.94957 1.06657 1.18428 0.87375 0.77885 0.81089 1.90766 1.66564 1.49368 1.38088 1.47558 1.05804 1.47919 1.29487 1.21961 0.95366 0.97727 0.87230 1.21509 0.95248 1.02261 0.97160 1.21886 0.94710 1.00060 0.99039 1.21508 0.85400 0.95720 0.93054 0.93494 1.21325 0.79190 0.97876 0.97440 0.90891 1.22908 0.97130 0.96637 1.00409 1.21251 0.92140 0.91368 0.88958 1.45420 1.07387 1.42358 1.39256 1.19321 0.89331 1.16313 1.11146 0.90046 1.25594 1.00233 0.99217 1.00841 1.70128 1.24155 1.28594 1.37180 0.85189 0.78612 0.77240 0.78514 1.20650 1.22212 1.20127 1.19788 0.92075 0.95132 0.98191 1.20784 0.99234 0.94197 1.03275 0.91028 0.86005 0.90752 0.78791 0.80321 0.89131 0.87420 0.91972 0.87824 0.93198 0.92631 0.91121 0.89474 0.97016 0.96563 0.94440 0.90204 0.89343 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.87 9.58 -92.72 -0.89 -5.76 16 3 C 0.08 1.39 6.68 22.56 0.15 1.54 16 4 C 0.04 0.66 10.21 84.83 0.87 1.52 16 5 N -0.46 -8.72 10.34 -194.40 -2.01 -10.73 16 6 C 0.10 1.98 8.61 85.03 0.73 2.71 16 7 C -0.15 -3.62 4.79 -20.01 -0.10 -3.71 16 8 C 0.56 17.31 6.62 86.79 0.57 17.88 16 9 O -0.57 -22.01 14.65 -3.88 -0.06 -22.07 16 10 N -0.58 -16.80 2.73 -801.64 -2.19 -18.99 16 11 C 0.10 2.09 5.17 85.80 0.44 2.53 16 12 C -0.12 -2.82 5.96 29.99 0.18 -2.64 16 13 C -0.12 -3.87 5.13 30.51 0.16 -3.71 16 14 C 0.15 6.08 3.54 45.08 0.16 6.24 16 15 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 16 C 0.15 5.46 3.09 46.14 0.14 5.60 16 17 H 0.07 3.17 6.99 -2.39 -0.02 3.15 16 18 C -0.13 -4.96 6.08 31.61 0.19 -4.77 16 19 C 0.19 9.31 5.29 86.35 0.46 9.76 16 20 N -0.62 -31.58 2.99 -661.21 -1.98 -33.56 16 21 C -0.23 -13.01 10.31 84.03 0.87 -12.14 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 23 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 24 N -0.95 -57.77 10.52 21.65 0.23 -57.55 16 25 Si 0.98 46.26 29.55 68.60 2.03 48.28 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 29 C -0.04 -1.00 5.96 -19.31 -0.12 -1.11 16 30 C -0.12 -2.80 9.44 71.23 0.67 -2.13 16 31 H 0.07 0.24 7.68 -2.39 -0.02 0.22 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.21 7.67 -2.38 -0.02 0.19 16 34 H 0.20 1.54 6.30 -2.91 -0.02 1.52 16 35 H 0.18 2.96 7.43 -2.91 -0.02 2.93 16 36 H 0.09 1.69 7.53 -2.39 -0.02 1.67 16 37 H 0.11 1.87 4.76 -2.39 -0.01 1.86 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.94 7.15 -2.39 -0.02 1.93 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.09 2.84 6.83 -2.39 -0.02 2.82 16 44 H 0.01 0.66 7.39 -2.39 -0.02 0.64 16 45 H 0.02 0.88 7.68 -2.39 -0.02 0.86 16 46 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 47 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.09 1.82 7.47 -2.39 -0.02 1.80 16 49 H 0.07 1.95 6.11 -2.39 -0.01 1.93 16 Total: -1.00 -74.21 378.01 3.06 -71.16 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.97 Total: 13.77 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.96 Total: 15.45 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -5.95 Total: -120.82 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.95 Total: -27.83 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.21 3.06 -71.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049546990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.012 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds