Wall clock time and date at job start Wed Apr 1 2020 06:32:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 O 1.33489 * 126.82651 * 2 1
4 4 N 1.20661 * 113.15662 * 179.97438 * 3 2 1
5 5 C 1.30015 * 112.29699 * 359.73447 * 4 3 2
6 6 C 1.50705 * 127.33068 * 180.26770 * 5 4 3
7 7 C 1.52993 * 117.49998 * 8.77630 * 6 5 4
8 8 C 1.52996 * 117.50127 * 300.15166 * 6 5 4
9 9 C 1.37358 * 126.83155 * 180.02562 * 2 1 3
10 10 C 1.47401 * 128.56140 * 359.96194 * 9 2 1
11 11 O 1.21610 * 120.00292 * 90.02731 * 10 9 2
12 12 N 1.34777 * 119.99966 * 270.02437 * 10 9 2
13 13 C 1.45730 * 117.76120 * 359.97438 * 12 10 9
14 14 C 1.53055 * 109.55776 * 218.89588 * 13 12 10
15 15 C 1.52945 * 108.49056 * 306.19378 * 14 13 12
16 16 C 1.52307 * 109.84889 * 65.97393 * 15 14 13
17 17 H 1.08994 * 110.92904 * 66.59785 * 16 15 14
18 18 C 1.44187 * 117.76135 * 180.02562 * 12 10 9
19 19 H 1.09003 * 109.23032 * 27.35944 * 18 12 10
20 20 C 1.54067 * 111.76527 * 266.46409 * 18 12 10
21 21 C 1.54056 * 103.74243 * 206.74022 * 20 18 12
22 22 N 1.46879 * 107.70874 * 17.12818 * 21 20 18
23 23 C 1.36945 * 125.58340 * 182.96982 * 22 21 20
24 24 H 1.07997 * 119.99756 * 180.02562 * 23 22 21
25 25 C 1.38805 * 119.99878 * 0.02576 * 23 22 21
26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22
27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23
29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23
30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23
31 31 H 1.09007 * 109.46734 * 269.99958 * 1 2 3
32 32 H 1.08997 * 109.46922 * 29.99701 * 1 2 3
33 33 H 1.08996 * 109.46766 * 150.00010 * 1 2 3
34 34 H 1.09004 * 115.54394 * 154.47730 * 6 5 4
35 35 H 1.09000 * 117.49862 * 359.97438 * 7 6 5
36 36 H 1.09005 * 117.49782 * 145.01911 * 7 6 5
37 37 H 1.09009 * 117.49631 * 214.97975 * 8 6 5
38 38 H 1.08998 * 117.50010 * 359.97438 * 8 6 5
39 39 H 1.09006 * 109.45788 * 338.91778 * 13 12 10
40 40 H 1.08997 * 109.45966 * 98.88350 * 13 12 10
41 41 H 1.08990 * 109.63399 * 65.89755 * 14 13 12
42 42 H 1.08999 * 109.62967 * 186.29738 * 14 13 12
43 43 H 1.09000 * 109.41494 * 186.09058 * 15 14 13
44 44 H 1.08994 * 109.41769 * 305.95647 * 15 14 13
45 45 H 1.09003 * 110.57485 * 88.17480 * 20 18 12
46 46 H 1.08996 * 110.69826 * 325.36078 * 20 18 12
47 47 H 1.09004 * 109.81096 * 257.58282 * 21 20 18
48 48 H 1.08999 * 109.81376 * 136.68434 * 21 20 18
49 49 H 0.97001 * 119.99885 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.3072 1.0685 0.0000
4 7 3.4796 0.7834 0.0005
5 6 3.6747 -0.5021 0.0065
6 6 4.9965 -1.2258 0.0146
7 6 6.2595 -0.3879 0.2231
8 6 5.9481 -0.9720 -1.1563
9 6 2.3305 -1.0994 -0.0005
10 6 1.9588 -2.5258 -0.0004
11 8 1.8053 -3.1143 -1.0535
12 7 1.7890 -3.1778 1.1669
13 6 1.9857 -2.4256 2.3995
14 6 2.6915 -3.3085 3.4314
15 6 1.8944 -4.6045 3.5872
16 6 1.9467 -5.4028 2.2912
17 1 2.9584 -5.7562 2.0922
18 6 1.4262 -4.5722 1.1107
19 1 1.8026 -5.0040 0.1834
20 6 -0.1006 -4.7683 1.1765
21 6 -0.2630 -6.1743 1.7848
22 7 1.0146 -6.5412 2.4095
23 6 1.2933 -7.7406 3.0088
24 1 2.2672 -7.9145 3.4418
25 6 0.3239 -8.7328 3.0596
26 7 -0.8630 -8.5211 2.5314
27 14 0.7042 -10.3692 3.8763
28 1 1.2585 -11.3085 2.8685
29 1 1.6986 -10.1624 4.9598
30 1 -0.5420 -10.9375 4.4500
31 1 -0.3633 0.0000 1.0278
32 1 -0.3633 0.8900 -0.5138
33 1 -0.3633 -0.8900 -0.5138
34 1 4.9809 -2.2283 0.4423
35 1 6.1344 0.6869 0.3541
36 1 7.0751 -0.8390 0.7883
37 1 6.5589 -1.8075 -1.4986
38 1 5.6180 -0.2819 -1.9326
39 1 2.5972 -1.5467 2.1948
40 1 1.0184 -2.1116 2.7916
41 1 3.7003 -3.5380 3.0883
42 1 2.7395 -2.7874 4.3875
43 1 2.3219 -5.1978 4.3955
44 1 0.8572 -4.3659 3.8222
45 1 -0.5350 -4.7307 0.1774
46 1 -0.5581 -4.0173 1.8204
47 1 -0.5096 -6.8900 1.0004
48 1 -1.0521 -6.1627 2.5366
49 1 -1.5402 -9.2146 2.5666
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049598736.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:32:34
Heat of formation + Delta-G solvation = 83.234480 kcal
Electronic energy + Delta-G solvation = -31849.374479 eV
Core-core repulsion = 27781.448496 eV
Total energy + Delta-G solvation = -4067.925984 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-45.05223 -40.46019 -38.04261 -37.67541 -35.45504 -33.92370 -33.04278 -32.66461
-32.19608 -29.19790 -28.53025 -28.07639 -25.65357 -24.51707 -24.41806 -23.52279
-22.66270 -22.03834 -20.73558 -20.10075 -19.37638 -18.37824 -18.00328 -17.59610
-16.93885 -16.79885 -16.04588 -15.52091 -15.10736 -14.80013 -14.66475 -14.32359
-14.01040 -13.99070 -13.64984 -13.54072 -13.43654 -13.03807 -12.88236 -12.53962
-12.28090 -12.11411 -12.02599 -11.88015 -11.74732 -11.50946 -11.43339 -11.11988
-11.00046 -10.80175 -10.70356 -10.69082 -10.53994 -10.25619 -10.11514 -9.84318
-9.71131 -9.66250 -9.64089 -9.43117 -8.62969 -8.41175 -6.89995 -5.74073
-3.09053 1.14108 1.66234 2.40399 2.67390 3.14629 3.38441 3.43513
3.45223 3.54103 3.72916 4.05465 4.45246 4.46674 4.58000 4.63595
4.71145 4.84828 4.89334 5.07158 5.11030 5.11935 5.25956 5.32160
5.34643 5.35709 5.43004 5.44967 5.52183 5.58034 5.62527 5.65657
5.72179 5.79257 5.82750 5.83235 5.95851 6.03695 6.18201 6.25337
6.33061 6.51375 6.53265 6.69716 6.91371 7.03079 7.41202 7.53839
7.60497 7.80381 8.04209 8.17139 8.23361 9.18017 9.77755 10.42196
11.36749
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.017504 B = 0.003069 C = 0.002862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.219473 B = 9121.279122 C = 9779.678820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.013 3.987
3 O 0.096 5.904
4 N -0.355 5.355
5 C 0.087 3.913
6 C -0.091 4.091
7 C -0.160 4.160
8 C -0.157 4.157
9 C -0.233 4.233
10 C 0.588 3.412
11 O -0.523 6.523
12 N -0.574 5.574
13 C 0.111 3.889
14 C -0.130 4.130
15 C -0.130 4.130
16 C 0.162 3.838
17 H 0.054 0.946
18 C 0.135 3.865
19 H 0.094 0.906
20 C -0.150 4.150
21 C 0.179 3.821
22 N -0.595 5.595
23 C -0.228 4.228
24 H 0.078 0.922
25 C -0.005 4.005
26 N -0.920 5.920
27 Si 0.912 3.088
28 H -0.288 1.288
29 H -0.281 1.281
30 H -0.291 1.291
31 H 0.095 0.905
32 H 0.090 0.910
33 H 0.096 0.904
34 H 0.129 0.871
35 H 0.102 0.898
36 H 0.104 0.896
37 H 0.106 0.894
38 H 0.097 0.903
39 H 0.074 0.926
40 H 0.064 0.936
41 H 0.064 0.936
42 H 0.071 0.929
43 H 0.064 0.936
44 H 0.063 0.937
45 H 0.063 0.937
46 H 0.056 0.944
47 H 0.053 0.947
48 H 0.040 0.960
49 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.997 19.568 -2.439 20.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.050 4.050
3 O 0.034 5.966
4 N -0.061 5.061
5 C -0.075 4.075
6 C -0.110 4.110
7 C -0.198 4.198
8 C -0.195 4.195
9 C -0.240 4.240
10 C 0.373 3.627
11 O -0.399 6.399
12 N -0.304 5.304
13 C -0.012 4.012
14 C -0.169 4.169
15 C -0.170 4.170
16 C 0.054 3.946
17 H 0.072 0.928
18 C 0.031 3.969
19 H 0.112 0.888
20 C -0.189 4.189
21 C 0.054 3.946
22 N -0.320 5.320
23 C -0.356 4.356
24 H 0.096 0.904
25 C -0.202 4.202
26 N -0.567 5.567
27 Si 0.742 3.258
28 H -0.216 1.216
29 H -0.207 1.207
30 H -0.217 1.217
31 H 0.114 0.886
32 H 0.109 0.891
33 H 0.114 0.886
34 H 0.146 0.854
35 H 0.120 0.880
36 H 0.123 0.877
37 H 0.124 0.876
38 H 0.115 0.885
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.083 0.917
42 H 0.090 0.910
43 H 0.083 0.917
44 H 0.081 0.919
45 H 0.081 0.919
46 H 0.075 0.925
47 H 0.071 0.929
48 H 0.059 0.941
49 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 7.537 20.047 -2.925 21.615
hybrid contribution -0.253 -1.598 0.534 1.703
sum 7.284 18.449 -2.391 19.978
Atomic orbital electron populations
1.20480 0.83067 1.05328 1.04736 1.24583 0.96000 0.84988 0.99472
1.84525 1.11038 1.32892 1.68170 1.73534 0.95932 1.16308 1.20325
1.23700 0.94237 0.88553 1.00990 1.20258 0.84788 0.99685 1.06300
1.23032 0.97055 1.00114 0.99569 1.23042 1.01165 1.03606 0.91692
1.21840 0.92585 0.95415 1.14192 1.17074 0.77392 0.83992 0.84235
1.90825 1.50579 1.67370 1.31139 1.47027 1.67205 1.10788 1.05420
1.21477 1.00481 0.94299 0.84897 1.21830 0.99673 0.97338 0.98046
1.22001 0.99980 0.94601 1.00410 1.20800 0.94433 0.88222 0.91190
0.92797 1.21240 0.96187 0.78515 1.00978 0.88839 1.22993 0.94606
1.00558 1.00778 1.21063 0.88321 0.88913 0.96254 1.44486 1.09325
1.11127 1.67034 1.19005 0.98048 0.88920 1.29670 0.90401 1.24797
0.95999 0.98449 1.00948 1.69969 1.04021 1.33240 1.49447 0.86124
0.76987 0.83769 0.78884 1.21568 1.20707 1.21692 0.88638 0.89132
0.88573 0.85357 0.87982 0.87725 0.87571 0.88485 0.90781 0.91808
0.91694 0.91028 0.91694 0.91872 0.91854 0.92523 0.92866 0.94134
0.93702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.60 10.33 36.01 0.37 -0.23 16
2 C 0.01 0.14 7.55 -34.63 -0.26 -0.12 16
3 O 0.10 1.11 11.06 18.66 0.21 1.31 16
4 N -0.36 -4.47 11.71 34.78 0.41 -4.07 16
5 C 0.09 1.10 6.73 -79.77 -0.54 0.56 16
6 C -0.09 -1.01 6.31 -91.77 -0.58 -1.59 16
7 C -0.16 -1.42 10.16 -26.74 -0.27 -1.69 16
8 C -0.16 -1.49 10.23 -26.73 -0.27 -1.76 16
9 C -0.23 -3.08 4.13 -102.90 -0.42 -3.51 16
10 C 0.59 9.23 7.37 -12.53 -0.09 9.14 16
11 O -0.52 -10.13 16.39 5.27 0.09 -10.04 16
12 N -0.57 -8.63 2.80 -168.71 -0.47 -9.10 16
13 C 0.11 1.37 6.11 -4.43 -0.03 1.34 16
14 C -0.13 -1.65 6.10 -26.73 -0.16 -1.81 16
15 C -0.13 -2.17 5.30 -27.11 -0.14 -2.32 16
16 C 0.16 3.18 3.24 -67.45 -0.22 2.96 16
17 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
18 C 0.13 2.45 2.74 -68.37 -0.19 2.27 16
19 H 0.09 1.91 7.10 -51.93 -0.37 1.54 16
20 C -0.15 -2.85 6.44 -25.62 -0.17 -3.01 16
21 C 0.18 4.27 5.39 -3.28 -0.02 4.25 16
22 N -0.60 -14.52 2.95 -164.02 -0.48 -15.00 16
23 C -0.23 -6.13 10.27 -15.06 -0.15 -6.28 16
24 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16
25 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16
26 N -0.92 -26.46 10.29 55.49 0.57 -25.89 16
27 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16
28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
31 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16
32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
33 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16
34 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16
35 H 0.10 0.95 7.97 -51.93 -0.41 0.53 16
36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16
37 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16
38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
39 H 0.07 0.84 6.04 -51.93 -0.31 0.52 16
40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
44 H 0.06 1.13 8.01 -51.93 -0.42 0.72 16
45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
47 H 0.05 1.42 7.25 -51.93 -0.38 1.05 16
48 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16
49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
LS Contribution 394.05 15.07 5.94 5.94
Total: -1.00 -31.58 394.05 -9.76 -41.34
By element:
Atomic # 1 Polarization: 8.63 SS G_CDS: -7.75 Total: 0.88 kcal
Atomic # 6 Polarization: 1.19 SS G_CDS: -3.24 Total: -2.05 kcal
Atomic # 7 Polarization: -54.08 SS G_CDS: 0.02 Total: -54.05 kcal
Atomic # 8 Polarization: -9.02 SS G_CDS: 0.29 Total: -8.73 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -31.58 -9.76 -41.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049598736.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.570 kcal
(2) G-P(sol) polarization free energy of solvation -31.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds