Wall clock time and date at job start Wed Apr 1 2020 06:32:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 O 1.33489 * 126.82651 * 2 1
4 4 N 1.20661 * 113.15662 * 179.97438 * 3 2 1
5 5 C 1.30015 * 112.29699 * 359.73447 * 4 3 2
6 6 C 1.50705 * 127.33068 * 180.26770 * 5 4 3
7 7 C 1.52993 * 117.49998 * 8.77630 * 6 5 4
8 8 C 1.52996 * 117.50127 * 300.15166 * 6 5 4
9 9 C 1.37358 * 126.83155 * 180.02562 * 2 1 3
10 10 C 1.47401 * 128.56140 * 359.96194 * 9 2 1
11 11 O 1.21610 * 120.00292 * 90.02731 * 10 9 2
12 12 N 1.34777 * 119.99966 * 270.02437 * 10 9 2
13 13 C 1.45730 * 117.76120 * 359.97438 * 12 10 9
14 14 C 1.53055 * 109.55776 * 218.89588 * 13 12 10
15 15 C 1.52945 * 108.49056 * 306.19378 * 14 13 12
16 16 C 1.52307 * 109.84889 * 65.97393 * 15 14 13
17 17 H 1.08994 * 110.92904 * 66.59785 * 16 15 14
18 18 C 1.44187 * 117.76135 * 180.02562 * 12 10 9
19 19 H 1.09003 * 109.23032 * 27.35944 * 18 12 10
20 20 C 1.54067 * 111.76527 * 266.46409 * 18 12 10
21 21 C 1.54056 * 103.74243 * 206.74022 * 20 18 12
22 22 N 1.46879 * 107.70874 * 17.12818 * 21 20 18
23 23 C 1.36945 * 125.58340 * 182.96982 * 22 21 20
24 24 H 1.07997 * 119.99756 * 180.02562 * 23 22 21
25 25 C 1.38805 * 119.99878 * 0.02576 * 23 22 21
26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22
27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23
29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23
30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23
31 31 H 1.09007 * 109.46734 * 269.99958 * 1 2 3
32 32 H 1.08997 * 109.46922 * 29.99701 * 1 2 3
33 33 H 1.08996 * 109.46766 * 150.00010 * 1 2 3
34 34 H 1.09004 * 115.54394 * 154.47730 * 6 5 4
35 35 H 1.09000 * 117.49862 * 359.97438 * 7 6 5
36 36 H 1.09005 * 117.49782 * 145.01911 * 7 6 5
37 37 H 1.09009 * 117.49631 * 214.97975 * 8 6 5
38 38 H 1.08998 * 117.50010 * 359.97438 * 8 6 5
39 39 H 1.09006 * 109.45788 * 338.91778 * 13 12 10
40 40 H 1.08997 * 109.45966 * 98.88350 * 13 12 10
41 41 H 1.08990 * 109.63399 * 65.89755 * 14 13 12
42 42 H 1.08999 * 109.62967 * 186.29738 * 14 13 12
43 43 H 1.09000 * 109.41494 * 186.09058 * 15 14 13
44 44 H 1.08994 * 109.41769 * 305.95647 * 15 14 13
45 45 H 1.09003 * 110.57485 * 88.17480 * 20 18 12
46 46 H 1.08996 * 110.69826 * 325.36078 * 20 18 12
47 47 H 1.09004 * 109.81096 * 257.58282 * 21 20 18
48 48 H 1.08999 * 109.81376 * 136.68434 * 21 20 18
49 49 H 0.97001 * 119.99885 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.3072 1.0685 0.0000
4 7 3.4796 0.7834 0.0005
5 6 3.6747 -0.5021 0.0065
6 6 4.9965 -1.2258 0.0146
7 6 6.2595 -0.3879 0.2231
8 6 5.9481 -0.9720 -1.1563
9 6 2.3305 -1.0994 -0.0005
10 6 1.9588 -2.5258 -0.0004
11 8 1.8053 -3.1143 -1.0535
12 7 1.7890 -3.1778 1.1669
13 6 1.9857 -2.4256 2.3995
14 6 2.6915 -3.3085 3.4314
15 6 1.8944 -4.6045 3.5872
16 6 1.9467 -5.4028 2.2912
17 1 2.9584 -5.7562 2.0922
18 6 1.4262 -4.5722 1.1107
19 1 1.8026 -5.0040 0.1834
20 6 -0.1006 -4.7683 1.1765
21 6 -0.2630 -6.1743 1.7848
22 7 1.0146 -6.5412 2.4095
23 6 1.2933 -7.7406 3.0088
24 1 2.2672 -7.9145 3.4418
25 6 0.3239 -8.7328 3.0596
26 7 -0.8630 -8.5211 2.5314
27 14 0.7042 -10.3692 3.8763
28 1 1.2585 -11.3085 2.8685
29 1 1.6986 -10.1624 4.9598
30 1 -0.5420 -10.9375 4.4500
31 1 -0.3633 0.0000 1.0278
32 1 -0.3633 0.8900 -0.5138
33 1 -0.3633 -0.8900 -0.5138
34 1 4.9809 -2.2283 0.4423
35 1 6.1344 0.6869 0.3541
36 1 7.0751 -0.8390 0.7883
37 1 6.5589 -1.8075 -1.4986
38 1 5.6180 -0.2819 -1.9326
39 1 2.5972 -1.5467 2.1948
40 1 1.0184 -2.1116 2.7916
41 1 3.7003 -3.5380 3.0883
42 1 2.7395 -2.7874 4.3875
43 1 2.3219 -5.1978 4.3955
44 1 0.8572 -4.3659 3.8222
45 1 -0.5350 -4.7307 0.1774
46 1 -0.5581 -4.0173 1.8204
47 1 -0.5096 -6.8900 1.0004
48 1 -1.0521 -6.1627 2.5366
49 1 -1.5402 -9.2146 2.5666
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049598736.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:32:07
Heat of formation + Delta-G solvation = 66.261269 kcal
Electronic energy + Delta-G solvation = -31850.110493 eV
Core-core repulsion = 27781.448496 eV
Total energy + Delta-G solvation = -4068.661997 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 28.12 seconds
Orbital eigenvalues (eV)
-45.97262 -41.81194 -39.49040 -38.49513 -36.94452 -34.94803 -34.12505 -33.95349
-33.83756 -30.96451 -30.01144 -28.97333 -26.93794 -26.17319 -25.53160 -24.62473
-23.40096 -23.32500 -22.17092 -21.66465 -20.34097 -19.64681 -19.07555 -18.82361
-18.58625 -17.86218 -17.22357 -16.78900 -16.42178 -16.22585 -16.04214 -15.67519
-15.29954 -15.16404 -15.03098 -14.58605 -14.31191 -14.12972 -14.06758 -13.78125
-13.69069 -13.59023 -13.14276 -13.06985 -12.85124 -12.65945 -12.63832 -12.53050
-12.37354 -12.36694 -12.27046 -12.05181 -11.95098 -11.70604 -11.57920 -11.45175
-11.25551 -11.17006 -10.69508 -10.56678 -10.37261 -9.74507 -8.91000 -7.83453
-5.20055 0.25758 0.72937 1.20542 1.46919 1.48716 1.56873 1.66970
2.06233 2.50293 2.77213 2.84816 3.19392 3.33724 3.43220 3.56799
3.75921 3.82404 3.86520 3.88719 3.95305 3.98244 4.01485 4.05972
4.11702 4.31808 4.35579 4.53521 4.58284 4.59961 4.62198 4.65428
4.66850 4.68895 4.74169 4.82084 4.90314 4.96125 5.00219 5.02925
5.08225 5.14739 5.16192 5.31550 5.41961 5.53866 5.59269 5.63931
5.74887 6.18888 6.20397 6.94111 7.10106 7.15114 7.76492 8.40160
9.26334
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.017504 B = 0.003069 C = 0.002862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.219473 B = 9121.279122 C = 9779.678820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C 0.037 3.963
3 O 0.098 5.902
4 N -0.366 5.366
5 C 0.086 3.914
6 C -0.114 4.114
7 C -0.141 4.141
8 C -0.158 4.158
9 C -0.263 4.263
10 C 0.596 3.404
11 O -0.567 6.567
12 N -0.568 5.568
13 C 0.110 3.890
14 C -0.119 4.119
15 C -0.119 4.119
16 C 0.158 3.842
17 H 0.048 0.952
18 C 0.153 3.847
19 H 0.066 0.934
20 C -0.133 4.133
21 C 0.192 3.808
22 N -0.615 5.615
23 C -0.235 4.235
24 H 0.084 0.916
25 C -0.064 4.064
26 N -0.951 5.951
27 Si 0.977 3.023
28 H -0.289 1.289
29 H -0.267 1.267
30 H -0.295 1.295
31 H 0.119 0.881
32 H 0.116 0.884
33 H 0.085 0.915
34 H 0.125 0.875
35 H 0.099 0.901
36 H 0.125 0.875
37 H 0.118 0.882
38 H 0.089 0.911
39 H 0.093 0.907
40 H 0.082 0.918
41 H 0.069 0.931
42 H 0.104 0.896
43 H 0.054 0.946
44 H 0.053 0.947
45 H 0.064 0.936
46 H 0.079 0.921
47 H 0.012 0.988
48 H 0.011 0.989
49 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.240 22.080 -1.173 23.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.027 4.027
3 O 0.038 5.962
4 N -0.073 5.073
5 C -0.075 4.075
6 C -0.133 4.133
7 C -0.178 4.178
8 C -0.196 4.196
9 C -0.271 4.271
10 C 0.384 3.616
11 O -0.446 6.446
12 N -0.298 5.298
13 C -0.012 4.012
14 C -0.158 4.158
15 C -0.159 4.159
16 C 0.051 3.949
17 H 0.066 0.934
18 C 0.047 3.953
19 H 0.084 0.916
20 C -0.172 4.172
21 C 0.066 3.934
22 N -0.340 5.340
23 C -0.364 4.364
24 H 0.102 0.898
25 C -0.257 4.257
26 N -0.600 5.600
27 Si 0.805 3.195
28 H -0.216 1.216
29 H -0.191 1.191
30 H -0.222 1.222
31 H 0.137 0.863
32 H 0.135 0.865
33 H 0.103 0.897
34 H 0.143 0.857
35 H 0.117 0.883
36 H 0.143 0.857
37 H 0.137 0.863
38 H 0.108 0.892
39 H 0.111 0.889
40 H 0.100 0.900
41 H 0.088 0.912
42 H 0.122 0.878
43 H 0.073 0.927
44 H 0.071 0.929
45 H 0.083 0.917
46 H 0.098 0.902
47 H 0.030 0.970
48 H 0.030 0.970
49 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 8.819 22.621 -1.631 24.334
hybrid contribution -0.618 -2.333 0.096 2.416
sum 8.201 20.288 -1.535 21.936
Atomic orbital electron populations
1.20714 0.80636 1.06066 1.06441 1.25102 0.97078 0.84020 0.96505
1.84524 1.10881 1.32848 1.67949 1.73529 0.96404 1.16176 1.21169
1.23920 0.94587 0.88583 1.00446 1.20371 0.85071 0.99954 1.07918
1.23086 0.96127 0.99717 0.98869 1.23112 1.00765 1.03993 0.91737
1.21573 0.93659 0.94272 1.17569 1.17300 0.76121 0.84793 0.83431
1.90804 1.52460 1.68641 1.32729 1.46975 1.66763 1.09398 1.06689
1.21718 1.01866 0.94288 0.83309 1.21785 0.98965 0.95149 0.99854
1.21781 1.00161 0.96183 0.97736 1.20993 0.93083 0.87484 0.93331
0.93394 1.20749 0.95136 0.80369 0.99024 0.91575 1.22790 0.95591
0.98021 1.00832 1.20728 0.87693 0.90697 0.94242 1.44726 1.10410
1.11980 1.66878 1.19380 0.98144 0.89947 1.28951 0.89824 1.25612
0.96041 1.01824 1.02207 1.70187 1.04837 1.33865 1.51062 0.85106
0.76683 0.79599 0.78106 1.21650 1.19140 1.22205 0.86251 0.86518
0.89678 0.85730 0.88288 0.85687 0.86341 0.89226 0.88931 0.90001
0.91213 0.87767 0.92717 0.92865 0.91689 0.90244 0.96997 0.97032
0.94460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.99 10.33 71.24 0.74 -0.25 16
2 C 0.04 0.71 7.55 25.48 0.19 0.90 16
3 O 0.10 2.02 11.06 77.02 0.85 2.88 16
4 N -0.37 -8.47 11.71 -44.79 -0.52 -9.00 16
5 C 0.09 2.04 6.73 45.16 0.30 2.34 16
6 C -0.11 -2.34 6.31 -11.54 -0.07 -2.41 16
7 C -0.14 -2.17 10.16 30.59 0.31 -1.86 16
8 C -0.16 -2.78 10.23 30.59 0.31 -2.46 16
9 C -0.26 -6.51 4.13 -18.75 -0.08 -6.59 16
10 C 0.60 18.23 7.37 86.66 0.64 18.86 16
11 O -0.57 -22.25 16.39 -4.06 -0.07 -22.32 16
12 N -0.57 -16.32 2.80 -805.94 -2.26 -18.57 16
13 C 0.11 2.34 6.11 86.54 0.53 2.87 16
14 C -0.12 -2.62 6.10 30.59 0.19 -2.44 16
15 C -0.12 -3.81 5.30 30.35 0.16 -3.65 16
16 C 0.16 6.22 3.24 44.70 0.14 6.37 16
17 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
18 C 0.15 5.58 2.74 45.93 0.13 5.70 16
19 H 0.07 2.80 7.10 -2.39 -0.02 2.78 16
20 C -0.13 -5.11 6.44 31.31 0.20 -4.90 16
21 C 0.19 9.54 5.39 86.66 0.47 10.00 16
22 N -0.62 -30.87 2.95 -672.85 -1.98 -32.85 16
23 C -0.24 -12.91 10.27 84.03 0.86 -12.04 16
24 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16
25 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16
26 N -0.95 -56.96 10.29 21.65 0.22 -56.74 16
27 Si 0.98 45.43 29.55 68.60 2.03 47.46 16
28 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16
29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
30 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16
31 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16
32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16
33 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16
34 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16
35 H 0.10 1.61 7.97 -2.39 -0.02 1.60 16
36 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16
37 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16
38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
39 H 0.09 1.75 6.04 -2.38 -0.01 1.73 16
40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16
43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
44 H 0.05 1.82 8.01 -2.39 -0.02 1.80 16
45 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
46 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16
47 H 0.01 0.67 7.25 -2.38 -0.02 0.66 16
48 H 0.01 0.63 7.60 -2.39 -0.02 0.61 16
49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16
Total: -1.00 -72.15 394.05 4.71 -67.43
By element:
Atomic # 1 Polarization: 13.44 SS G_CDS: 0.95 Total: 14.39 kcal
Atomic # 6 Polarization: 1.82 SS G_CDS: 5.49 Total: 7.31 kcal
Atomic # 7 Polarization: -112.62 SS G_CDS: -4.54 Total: -117.16 kcal
Atomic # 8 Polarization: -20.23 SS G_CDS: 0.79 Total: -19.44 kcal
Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal
Total: -72.15 4.71 -67.43 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049598736.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.696 kcal
(2) G-P(sol) polarization free energy of solvation -72.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.261 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 28.12 seconds