Wall clock time and date at job start Wed Apr 1 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33489 * 126.82651 * 2 1 4 4 N 1.20661 * 113.15662 * 179.97438 * 3 2 1 5 5 C 1.30015 * 112.29699 * 359.73447 * 4 3 2 6 6 C 1.50705 * 127.33068 * 180.26770 * 5 4 3 7 7 C 1.52993 * 117.49998 * 8.77630 * 6 5 4 8 8 C 1.52996 * 117.50127 * 300.15166 * 6 5 4 9 9 C 1.37358 * 126.83155 * 180.02562 * 2 1 3 10 10 C 1.47401 * 128.56140 * 359.96194 * 9 2 1 11 11 O 1.21610 * 120.00292 * 90.02731 * 10 9 2 12 12 N 1.34777 * 119.99966 * 270.02437 * 10 9 2 13 13 C 1.45730 * 117.76120 * 359.97438 * 12 10 9 14 14 C 1.53055 * 109.55776 * 218.89588 * 13 12 10 15 15 C 1.52945 * 108.49056 * 306.19378 * 14 13 12 16 16 C 1.52307 * 109.84889 * 65.97393 * 15 14 13 17 17 H 1.08994 * 110.92904 * 66.59785 * 16 15 14 18 18 C 1.44187 * 117.76135 * 180.02562 * 12 10 9 19 19 H 1.09003 * 109.23032 * 27.35944 * 18 12 10 20 20 C 1.54067 * 111.76527 * 266.46409 * 18 12 10 21 21 C 1.54056 * 103.74243 * 206.74022 * 20 18 12 22 22 N 1.46879 * 107.70874 * 17.12818 * 21 20 18 23 23 C 1.36945 * 125.58340 * 182.96982 * 22 21 20 24 24 H 1.07997 * 119.99756 * 180.02562 * 23 22 21 25 25 C 1.38805 * 119.99878 * 0.02576 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23 29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23 30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23 31 31 H 1.09007 * 109.46734 * 269.99958 * 1 2 3 32 32 H 1.08997 * 109.46922 * 29.99701 * 1 2 3 33 33 H 1.08996 * 109.46766 * 150.00010 * 1 2 3 34 34 H 1.09004 * 115.54394 * 154.47730 * 6 5 4 35 35 H 1.09000 * 117.49862 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.49782 * 145.01911 * 7 6 5 37 37 H 1.09009 * 117.49631 * 214.97975 * 8 6 5 38 38 H 1.08998 * 117.50010 * 359.97438 * 8 6 5 39 39 H 1.09006 * 109.45788 * 338.91778 * 13 12 10 40 40 H 1.08997 * 109.45966 * 98.88350 * 13 12 10 41 41 H 1.08990 * 109.63399 * 65.89755 * 14 13 12 42 42 H 1.08999 * 109.62967 * 186.29738 * 14 13 12 43 43 H 1.09000 * 109.41494 * 186.09058 * 15 14 13 44 44 H 1.08994 * 109.41769 * 305.95647 * 15 14 13 45 45 H 1.09003 * 110.57485 * 88.17480 * 20 18 12 46 46 H 1.08996 * 110.69826 * 325.36078 * 20 18 12 47 47 H 1.09004 * 109.81096 * 257.58282 * 21 20 18 48 48 H 1.08999 * 109.81376 * 136.68434 * 21 20 18 49 49 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7834 0.0005 5 6 3.6747 -0.5021 0.0065 6 6 4.9965 -1.2258 0.0146 7 6 6.2595 -0.3879 0.2231 8 6 5.9481 -0.9720 -1.1563 9 6 2.3305 -1.0994 -0.0005 10 6 1.9588 -2.5258 -0.0004 11 8 1.8053 -3.1143 -1.0535 12 7 1.7890 -3.1778 1.1669 13 6 1.9857 -2.4256 2.3995 14 6 2.6915 -3.3085 3.4314 15 6 1.8944 -4.6045 3.5872 16 6 1.9467 -5.4028 2.2912 17 1 2.9584 -5.7562 2.0922 18 6 1.4262 -4.5722 1.1107 19 1 1.8026 -5.0040 0.1834 20 6 -0.1006 -4.7683 1.1765 21 6 -0.2630 -6.1743 1.7848 22 7 1.0146 -6.5412 2.4095 23 6 1.2933 -7.7406 3.0088 24 1 2.2672 -7.9145 3.4418 25 6 0.3239 -8.7328 3.0596 26 7 -0.8630 -8.5211 2.5314 27 14 0.7042 -10.3692 3.8763 28 1 1.2585 -11.3085 2.8685 29 1 1.6986 -10.1624 4.9598 30 1 -0.5420 -10.9375 4.4500 31 1 -0.3633 0.0000 1.0278 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.9809 -2.2283 0.4423 35 1 6.1344 0.6869 0.3541 36 1 7.0751 -0.8390 0.7883 37 1 6.5589 -1.8075 -1.4986 38 1 5.6180 -0.2819 -1.9326 39 1 2.5972 -1.5467 2.1948 40 1 1.0184 -2.1116 2.7916 41 1 3.7003 -3.5380 3.0883 42 1 2.7395 -2.7874 4.3875 43 1 2.3219 -5.1978 4.3955 44 1 0.8572 -4.3659 3.8222 45 1 -0.5350 -4.7307 0.1774 46 1 -0.5581 -4.0173 1.8204 47 1 -0.5096 -6.8900 1.0004 48 1 -1.0521 -6.1627 2.5366 49 1 -1.5402 -9.2146 2.5666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049598736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:07 Heat of formation + Delta-G solvation = 66.261269 kcal Electronic energy + Delta-G solvation = -31850.110493 eV Core-core repulsion = 27781.448496 eV Total energy + Delta-G solvation = -4068.661997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 28.12 seconds Orbital eigenvalues (eV) -45.97262 -41.81194 -39.49040 -38.49513 -36.94452 -34.94803 -34.12505 -33.95349 -33.83756 -30.96451 -30.01144 -28.97333 -26.93794 -26.17319 -25.53160 -24.62473 -23.40096 -23.32500 -22.17092 -21.66465 -20.34097 -19.64681 -19.07555 -18.82361 -18.58625 -17.86218 -17.22357 -16.78900 -16.42178 -16.22585 -16.04214 -15.67519 -15.29954 -15.16404 -15.03098 -14.58605 -14.31191 -14.12972 -14.06758 -13.78125 -13.69069 -13.59023 -13.14276 -13.06985 -12.85124 -12.65945 -12.63832 -12.53050 -12.37354 -12.36694 -12.27046 -12.05181 -11.95098 -11.70604 -11.57920 -11.45175 -11.25551 -11.17006 -10.69508 -10.56678 -10.37261 -9.74507 -8.91000 -7.83453 -5.20055 0.25758 0.72937 1.20542 1.46919 1.48716 1.56873 1.66970 2.06233 2.50293 2.77213 2.84816 3.19392 3.33724 3.43220 3.56799 3.75921 3.82404 3.86520 3.88719 3.95305 3.98244 4.01485 4.05972 4.11702 4.31808 4.35579 4.53521 4.58284 4.59961 4.62198 4.65428 4.66850 4.68895 4.74169 4.82084 4.90314 4.96125 5.00219 5.02925 5.08225 5.14739 5.16192 5.31550 5.41961 5.53866 5.59269 5.63931 5.74887 6.18888 6.20397 6.94111 7.10106 7.15114 7.76492 8.40160 9.26334 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003069 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.219473 B = 9121.279122 C = 9779.678820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.037 3.963 3 O 0.098 5.902 4 N -0.366 5.366 5 C 0.086 3.914 6 C -0.114 4.114 7 C -0.141 4.141 8 C -0.158 4.158 9 C -0.263 4.263 10 C 0.596 3.404 11 O -0.567 6.567 12 N -0.568 5.568 13 C 0.110 3.890 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.158 3.842 17 H 0.048 0.952 18 C 0.153 3.847 19 H 0.066 0.934 20 C -0.133 4.133 21 C 0.192 3.808 22 N -0.615 5.615 23 C -0.235 4.235 24 H 0.084 0.916 25 C -0.064 4.064 26 N -0.951 5.951 27 Si 0.977 3.023 28 H -0.289 1.289 29 H -0.267 1.267 30 H -0.295 1.295 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.012 0.988 48 H 0.011 0.989 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 22.080 -1.173 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 O 0.038 5.962 4 N -0.073 5.073 5 C -0.075 4.075 6 C -0.133 4.133 7 C -0.178 4.178 8 C -0.196 4.196 9 C -0.271 4.271 10 C 0.384 3.616 11 O -0.446 6.446 12 N -0.298 5.298 13 C -0.012 4.012 14 C -0.158 4.158 15 C -0.159 4.159 16 C 0.051 3.949 17 H 0.066 0.934 18 C 0.047 3.953 19 H 0.084 0.916 20 C -0.172 4.172 21 C 0.066 3.934 22 N -0.340 5.340 23 C -0.364 4.364 24 H 0.102 0.898 25 C -0.257 4.257 26 N -0.600 5.600 27 Si 0.805 3.195 28 H -0.216 1.216 29 H -0.191 1.191 30 H -0.222 1.222 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.819 22.621 -1.631 24.334 hybrid contribution -0.618 -2.333 0.096 2.416 sum 8.201 20.288 -1.535 21.936 Atomic orbital electron populations 1.20714 0.80636 1.06066 1.06441 1.25102 0.97078 0.84020 0.96505 1.84524 1.10881 1.32848 1.67949 1.73529 0.96404 1.16176 1.21169 1.23920 0.94587 0.88583 1.00446 1.20371 0.85071 0.99954 1.07918 1.23086 0.96127 0.99717 0.98869 1.23112 1.00765 1.03993 0.91737 1.21573 0.93659 0.94272 1.17569 1.17300 0.76121 0.84793 0.83431 1.90804 1.52460 1.68641 1.32729 1.46975 1.66763 1.09398 1.06689 1.21718 1.01866 0.94288 0.83309 1.21785 0.98965 0.95149 0.99854 1.21781 1.00161 0.96183 0.97736 1.20993 0.93083 0.87484 0.93331 0.93394 1.20749 0.95136 0.80369 0.99024 0.91575 1.22790 0.95591 0.98021 1.00832 1.20728 0.87693 0.90697 0.94242 1.44726 1.10410 1.11980 1.66878 1.19380 0.98144 0.89947 1.28951 0.89824 1.25612 0.96041 1.01824 1.02207 1.70187 1.04837 1.33865 1.51062 0.85106 0.76683 0.79599 0.78106 1.21650 1.19140 1.22205 0.86251 0.86518 0.89678 0.85730 0.88288 0.85687 0.86341 0.89226 0.88931 0.90001 0.91213 0.87767 0.92717 0.92865 0.91689 0.90244 0.96997 0.97032 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.33 71.24 0.74 -0.25 16 2 C 0.04 0.71 7.55 25.48 0.19 0.90 16 3 O 0.10 2.02 11.06 77.02 0.85 2.88 16 4 N -0.37 -8.47 11.71 -44.79 -0.52 -9.00 16 5 C 0.09 2.04 6.73 45.16 0.30 2.34 16 6 C -0.11 -2.34 6.31 -11.54 -0.07 -2.41 16 7 C -0.14 -2.17 10.16 30.59 0.31 -1.86 16 8 C -0.16 -2.78 10.23 30.59 0.31 -2.46 16 9 C -0.26 -6.51 4.13 -18.75 -0.08 -6.59 16 10 C 0.60 18.23 7.37 86.66 0.64 18.86 16 11 O -0.57 -22.25 16.39 -4.06 -0.07 -22.32 16 12 N -0.57 -16.32 2.80 -805.94 -2.26 -18.57 16 13 C 0.11 2.34 6.11 86.54 0.53 2.87 16 14 C -0.12 -2.62 6.10 30.59 0.19 -2.44 16 15 C -0.12 -3.81 5.30 30.35 0.16 -3.65 16 16 C 0.16 6.22 3.24 44.70 0.14 6.37 16 17 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 18 C 0.15 5.58 2.74 45.93 0.13 5.70 16 19 H 0.07 2.80 7.10 -2.39 -0.02 2.78 16 20 C -0.13 -5.11 6.44 31.31 0.20 -4.90 16 21 C 0.19 9.54 5.39 86.66 0.47 10.00 16 22 N -0.62 -30.87 2.95 -672.85 -1.98 -32.85 16 23 C -0.24 -12.91 10.27 84.03 0.86 -12.04 16 24 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 25 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 26 N -0.95 -56.96 10.29 21.65 0.22 -56.74 16 27 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 28 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 31 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 34 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.10 1.61 7.97 -2.39 -0.02 1.60 16 36 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 1.75 6.04 -2.38 -0.01 1.73 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.82 8.01 -2.39 -0.02 1.80 16 45 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.01 0.67 7.25 -2.38 -0.02 0.66 16 48 H 0.01 0.63 7.60 -2.39 -0.02 0.61 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.15 394.05 4.71 -67.43 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.95 Total: 14.39 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.49 Total: 7.31 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -4.54 Total: -117.16 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.79 Total: -19.44 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.15 4.71 -67.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049598736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.696 kcal (2) G-P(sol) polarization free energy of solvation -72.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 28.12 seconds