Wall clock time and date at job start Wed Apr 1 2020 03:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 119.40890 * 2 1 4 4 C 1.38345 * 119.45773 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.82446 * 180.02562 * 4 3 2 6 6 C 1.39988 * 118.34875 * 359.97438 * 4 3 2 7 7 C 1.47518 * 120.59522 * 180.02562 * 6 4 3 8 8 O 1.21597 * 119.99873 * 269.97295 * 7 6 4 9 9 N 1.34773 * 120.00359 * 89.97879 * 7 6 4 10 10 C 1.47854 * 122.22501 * 359.97438 * 9 7 6 11 11 C 1.52724 * 111.05268 * 127.51013 * 10 9 7 12 12 C 1.53872 * 111.52140 * 48.54433 * 11 10 9 13 13 C 1.51077 * 107.34466 * 303.06624 * 12 11 10 14 14 H 1.09001 * 108.73373 * 309.15493 * 13 12 11 15 15 C 1.45724 * 122.22990 * 179.71312 * 9 7 6 16 16 H 1.09002 * 111.07109 * 119.47185 * 15 9 7 17 17 C 1.53336 * 116.43026 * 350.62645 * 15 9 7 18 18 C 1.55470 * 101.58354 * 206.93387 * 17 15 9 19 19 N 1.45017 * 119.19624 * 183.88805 * 13 12 11 20 20 C 1.36933 * 126.56531 * 28.80978 * 19 13 12 21 21 H 1.08004 * 119.99758 * 0.02562 * 20 19 13 22 22 C 1.38812 * 120.00495 * 179.97438 * 20 19 13 23 23 N 1.31624 * 119.99556 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00343 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47461 * 90.00251 * 24 22 20 26 26 H 1.48502 * 109.47109 * 210.00137 * 24 22 20 27 27 H 1.48506 * 109.46780 * 329.99983 * 24 22 20 28 28 C 1.40280 * 118.80612 * 359.97438 * 6 4 3 29 29 O 1.35422 * 119.80049 * 180.02562 * 28 6 4 30 30 N 1.31886 * 119.40248 * 180.29485 * 2 1 3 31 31 H 1.09001 * 109.46813 * 89.99734 * 1 2 3 32 32 H 1.09001 * 109.47237 * 210.00231 * 1 2 3 33 33 H 1.09000 * 109.46789 * 329.99940 * 1 2 3 34 34 H 1.07998 * 120.27217 * 0.03980 * 3 2 1 35 35 H 1.09002 * 109.46936 * 269.97599 * 5 4 3 36 36 H 1.08994 * 109.47680 * 29.97022 * 5 4 3 37 37 H 1.08997 * 109.47531 * 149.97645 * 5 4 3 38 38 H 1.08988 * 109.16756 * 247.91745 * 10 9 7 39 39 H 1.08998 * 109.16080 * 7.16616 * 10 9 7 40 40 H 1.09010 * 109.06697 * 169.06559 * 11 10 9 41 41 H 1.08996 * 109.07303 * 288.01693 * 11 10 9 42 42 H 1.09002 * 109.88146 * 62.52703 * 12 11 10 43 43 H 1.08998 * 109.87979 * 183.60452 * 12 11 10 44 44 H 1.09002 * 111.21209 * 88.78746 * 17 15 9 45 45 H 1.09001 * 110.87441 * 324.93335 * 17 15 9 46 46 H 1.09002 * 109.95662 * 263.00644 * 18 17 15 47 47 H 1.09001 * 109.96384 * 141.76870 * 18 17 15 48 48 H 0.97010 * 119.99787 * 180.02562 * 23 22 20 49 49 H 0.96700 * 114.00112 * 90.00414 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.3409 2.5011 0.0000 6 6 4.2356 -0.0251 -0.0005 7 6 5.7097 -0.0816 -0.0005 8 8 6.3172 -0.1054 -1.0536 9 7 6.3832 -0.1070 1.1666 10 6 5.6948 -0.0795 2.4748 11 6 6.1629 -1.2286 3.3653 12 6 7.6982 -1.3228 3.4048 13 6 8.1767 -1.4786 1.9803 14 1 7.6200 -2.2897 1.5108 15 6 7.8380 -0.1690 1.2232 16 1 8.2476 0.7013 1.7360 17 6 8.5622 -0.4276 -0.1033 18 6 9.8713 -1.1105 0.3837 19 7 9.5906 -1.6772 1.7267 20 6 10.4940 -2.2734 2.5655 21 1 10.1723 -2.6514 3.5247 22 6 11.8229 -2.3929 2.1826 23 7 12.2147 -1.9326 1.0133 24 14 13.0550 -3.2068 3.3265 25 1 13.1021 -4.6645 3.0471 26 1 14.3999 -2.6169 3.1060 27 1 12.6427 -2.9860 4.7360 28 6 3.4758 -1.2042 0.0006 29 8 4.0990 -2.4065 0.0012 30 7 2.1545 -1.1490 -0.0059 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6412 2.1375 0.0006 35 1 4.5268 2.8137 -1.0275 36 1 3.7622 3.2685 0.5141 37 1 5.2915 2.3578 0.5137 38 1 5.9073 0.8672 2.9712 39 1 4.6200 -0.1665 2.3155 40 1 5.7897 -1.0698 4.3772 41 1 5.7584 -2.1648 2.9807 42 1 8.1144 -0.4134 3.8383 43 1 8.0014 -2.1879 3.9945 44 1 8.7788 0.5058 -0.6229 45 1 7.9837 -1.0998 -0.7371 46 1 10.6725 -0.3743 0.4500 47 1 10.1537 -1.9072 -0.3045 48 1 13.1433 -2.0164 0.7455 49 1 4.2804 -2.7551 0.8847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049627261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:26 Heat of formation + Delta-G solvation = -1.681749 kcal Electronic energy + Delta-G solvation = -32059.588212 eV Core-core repulsion = 27987.979985 eV Total energy + Delta-G solvation = -4071.608228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 14.13 seconds Orbital eigenvalues (eV) -41.27063 -39.92291 -37.72755 -37.51264 -35.48545 -34.39197 -32.67226 -32.26097 -31.89996 -29.32101 -28.44426 -28.20131 -27.74280 -24.80273 -24.47745 -23.33099 -21.91300 -21.56701 -20.87935 -19.78670 -19.22896 -18.58958 -17.38082 -17.09666 -16.50394 -16.03156 -15.53185 -14.98599 -14.87439 -14.66948 -14.51690 -14.15492 -14.13961 -13.76482 -13.59969 -13.42027 -13.29821 -13.25585 -12.75743 -12.68104 -12.48342 -12.32595 -12.24374 -12.08358 -11.87204 -11.81508 -11.60884 -11.16089 -10.87581 -10.74569 -10.63549 -10.53261 -10.11076 -10.03951 -9.90857 -9.85796 -9.75589 -9.62307 -9.16111 -8.90246 -8.58592 -8.30371 -6.83272 -5.69947 -3.04441 0.56727 0.84637 2.64018 2.97990 3.19964 3.39408 3.40330 3.44850 3.47136 4.17172 4.24624 4.41215 4.48979 4.72357 4.74913 4.90015 4.99728 5.00444 5.08512 5.20855 5.22982 5.28688 5.30987 5.32425 5.39401 5.52025 5.54919 5.59958 5.67165 5.71947 5.75171 5.83690 5.88396 5.93126 6.03835 6.17745 6.22754 6.24851 6.34327 6.52573 6.68658 6.74477 6.88054 7.15244 7.25912 7.55755 7.59698 7.64182 7.67653 7.84143 8.24588 8.30923 9.19062 9.83072 10.51128 11.42017 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.003000 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.965294 B = 9331.937550 C = 9632.003710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.163 3.837 3 C -0.187 4.187 4 C 0.008 3.992 5 C -0.123 4.123 6 C -0.192 4.192 7 C 0.575 3.425 8 O -0.514 6.514 9 N -0.592 5.592 10 C 0.112 3.888 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.160 3.840 14 H 0.018 0.982 15 C 0.116 3.884 16 H 0.080 0.920 17 C -0.131 4.131 18 C 0.173 3.827 19 N -0.592 5.592 20 C -0.227 4.227 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.353 3.647 29 O -0.470 6.470 30 N -0.506 5.506 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.253 0.747 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.146 9.088 2.815 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.207 4.207 4 C 0.000 4.000 5 C -0.179 4.179 6 C -0.198 4.198 7 C 0.361 3.639 8 O -0.389 6.389 9 N -0.325 5.325 10 C -0.011 4.011 11 C -0.167 4.167 12 C -0.154 4.154 13 C 0.050 3.950 14 H 0.035 0.965 15 C 0.012 3.988 16 H 0.098 0.902 17 C -0.170 4.170 18 C 0.048 3.952 19 N -0.316 5.316 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.173 3.827 29 O -0.277 6.277 30 N -0.226 5.226 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -22.985 8.255 1.621 24.476 hybrid contribution 1.205 0.087 1.071 1.615 sum -21.779 8.342 2.693 23.477 Atomic orbital electron populations 1.20784 0.88224 1.03781 1.03495 1.21152 0.96918 0.87095 0.92336 1.21749 0.93586 0.99546 1.05838 1.20261 0.93617 0.94216 0.91921 1.20924 1.00174 0.92982 1.03852 1.20967 0.95517 0.94015 1.09343 1.17708 0.85583 0.76785 0.83817 1.90834 1.68308 1.48790 1.30963 1.48006 1.07471 1.72156 1.04870 1.21677 0.96153 0.99628 0.83675 1.21912 0.97668 0.98037 0.99127 1.21425 0.92765 1.02477 0.98692 1.20653 0.87825 0.93527 0.92979 0.96516 1.22365 0.76987 0.99482 0.99942 0.90167 1.22969 0.97781 1.01379 0.94850 1.21754 0.91778 0.96292 0.85350 1.44083 1.02402 1.68438 1.16704 1.18972 0.88219 1.30643 0.97680 0.90365 1.24808 0.97121 1.01201 0.97205 1.69953 1.15970 1.50732 1.19954 0.86151 0.80973 0.78986 0.79816 1.21635 1.21704 1.20732 1.19015 0.86269 0.84609 0.92770 1.84780 1.76586 1.32512 1.33843 1.67049 1.09153 1.30398 1.16007 0.89986 0.90153 0.90272 0.83919 0.89580 0.90248 0.90612 0.91247 0.91150 0.90770 0.92018 0.91668 0.91302 0.92026 0.89925 0.92529 0.94204 0.93702 0.73835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.01 0.37 -0.28 16 2 C 0.16 1.60 6.78 -82.53 -0.56 1.04 16 3 C -0.19 -1.63 9.41 -39.50 -0.37 -2.01 16 4 C 0.01 0.08 5.95 -103.93 -0.62 -0.53 16 5 C -0.12 -1.11 9.69 36.00 0.35 -0.76 16 6 C -0.19 -2.62 3.80 -104.69 -0.40 -3.02 16 7 C 0.58 9.42 5.30 -12.48 -0.07 9.35 16 8 O -0.51 -10.46 13.93 5.28 0.07 -10.39 16 9 N -0.59 -8.97 2.92 -165.57 -0.48 -9.45 16 10 C 0.11 1.27 6.31 -3.44 -0.02 1.25 16 11 C -0.13 -1.50 5.92 -26.42 -0.16 -1.66 16 12 C -0.11 -1.87 5.45 -27.24 -0.15 -2.01 16 13 C 0.16 3.23 2.58 -68.63 -0.18 3.05 16 14 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 15 C 0.12 2.15 3.28 -67.11 -0.22 1.93 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 17 C -0.13 -2.79 5.02 -25.24 -0.13 -2.92 16 18 C 0.17 4.35 5.47 -1.65 -0.01 4.34 16 19 N -0.59 -14.96 3.35 -163.53 -0.55 -15.51 16 20 C -0.23 -6.19 9.94 -15.06 -0.15 -6.34 16 21 H 0.08 2.04 7.31 -52.48 -0.38 1.65 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -27.16 10.46 55.49 0.58 -26.58 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.35 4.90 7.69 -16.61 -0.13 4.77 16 29 O -0.47 -6.67 13.01 -17.96 -0.23 -6.90 16 30 N -0.51 -6.47 10.28 -9.21 -0.09 -6.56 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.29 8.07 -51.93 -0.42 -0.12 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.49 8.10 -51.93 -0.42 0.06 16 37 H 0.07 0.79 7.19 -51.93 -0.37 0.42 16 38 H 0.07 0.71 8.14 -51.94 -0.42 0.28 16 39 H 0.07 0.70 6.44 -51.93 -0.33 0.36 16 40 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 43 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.88 6.20 -51.93 -0.32 1.56 16 46 H 0.06 1.55 7.19 -51.93 -0.37 1.17 16 47 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.40 3.97 9.06 45.56 0.41 4.38 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -34.89 385.81 -9.24 -44.13 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.80 Total: 2.55 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.53 Total: 5.92 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.55 Total: -58.10 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.16 Total: -17.29 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.89 -9.24 -44.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049627261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.450 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.13 seconds