Wall clock time and date at job start Wed Apr 1 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 119.40890 * 2 1 4 4 C 1.38345 * 119.45773 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.82446 * 180.02562 * 4 3 2 6 6 C 1.39988 * 118.34875 * 359.97438 * 4 3 2 7 7 C 1.47518 * 120.59522 * 180.02562 * 6 4 3 8 8 O 1.21597 * 119.99873 * 269.97295 * 7 6 4 9 9 N 1.34773 * 120.00359 * 89.97879 * 7 6 4 10 10 C 1.47854 * 122.22501 * 359.97438 * 9 7 6 11 11 C 1.52724 * 111.05268 * 127.51013 * 10 9 7 12 12 C 1.53872 * 111.52140 * 48.54433 * 11 10 9 13 13 C 1.51077 * 107.34466 * 303.06624 * 12 11 10 14 14 H 1.09001 * 108.73373 * 309.15493 * 13 12 11 15 15 C 1.45724 * 122.22990 * 179.71312 * 9 7 6 16 16 H 1.09002 * 111.07109 * 119.47185 * 15 9 7 17 17 C 1.53336 * 116.43026 * 350.62645 * 15 9 7 18 18 C 1.55470 * 101.58354 * 206.93387 * 17 15 9 19 19 N 1.45017 * 119.19624 * 183.88805 * 13 12 11 20 20 C 1.36933 * 126.56531 * 28.80978 * 19 13 12 21 21 H 1.08004 * 119.99758 * 0.02562 * 20 19 13 22 22 C 1.38812 * 120.00495 * 179.97438 * 20 19 13 23 23 N 1.31624 * 119.99556 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00343 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47461 * 90.00251 * 24 22 20 26 26 H 1.48502 * 109.47109 * 210.00137 * 24 22 20 27 27 H 1.48506 * 109.46780 * 329.99983 * 24 22 20 28 28 C 1.40280 * 118.80612 * 359.97438 * 6 4 3 29 29 O 1.35422 * 119.80049 * 180.02562 * 28 6 4 30 30 N 1.31886 * 119.40248 * 180.29485 * 2 1 3 31 31 H 1.09001 * 109.46813 * 89.99734 * 1 2 3 32 32 H 1.09001 * 109.47237 * 210.00231 * 1 2 3 33 33 H 1.09000 * 109.46789 * 329.99940 * 1 2 3 34 34 H 1.07998 * 120.27217 * 0.03980 * 3 2 1 35 35 H 1.09002 * 109.46936 * 269.97599 * 5 4 3 36 36 H 1.08994 * 109.47680 * 29.97022 * 5 4 3 37 37 H 1.08997 * 109.47531 * 149.97645 * 5 4 3 38 38 H 1.08988 * 109.16756 * 247.91745 * 10 9 7 39 39 H 1.08998 * 109.16080 * 7.16616 * 10 9 7 40 40 H 1.09010 * 109.06697 * 169.06559 * 11 10 9 41 41 H 1.08996 * 109.07303 * 288.01693 * 11 10 9 42 42 H 1.09002 * 109.88146 * 62.52703 * 12 11 10 43 43 H 1.08998 * 109.87979 * 183.60452 * 12 11 10 44 44 H 1.09002 * 111.21209 * 88.78746 * 17 15 9 45 45 H 1.09001 * 110.87441 * 324.93335 * 17 15 9 46 46 H 1.09002 * 109.95662 * 263.00644 * 18 17 15 47 47 H 1.09001 * 109.96384 * 141.76870 * 18 17 15 48 48 H 0.97010 * 119.99787 * 180.02562 * 23 22 20 49 49 H 0.96700 * 114.00112 * 90.00414 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.3409 2.5011 0.0000 6 6 4.2356 -0.0251 -0.0005 7 6 5.7097 -0.0816 -0.0005 8 8 6.3172 -0.1054 -1.0536 9 7 6.3832 -0.1070 1.1666 10 6 5.6948 -0.0795 2.4748 11 6 6.1629 -1.2286 3.3653 12 6 7.6982 -1.3228 3.4048 13 6 8.1767 -1.4786 1.9803 14 1 7.6200 -2.2897 1.5108 15 6 7.8380 -0.1690 1.2232 16 1 8.2476 0.7013 1.7360 17 6 8.5622 -0.4276 -0.1033 18 6 9.8713 -1.1105 0.3837 19 7 9.5906 -1.6772 1.7267 20 6 10.4940 -2.2734 2.5655 21 1 10.1723 -2.6514 3.5247 22 6 11.8229 -2.3929 2.1826 23 7 12.2147 -1.9326 1.0133 24 14 13.0550 -3.2068 3.3265 25 1 13.1021 -4.6645 3.0471 26 1 14.3999 -2.6169 3.1060 27 1 12.6427 -2.9860 4.7360 28 6 3.4758 -1.2042 0.0006 29 8 4.0990 -2.4065 0.0012 30 7 2.1545 -1.1490 -0.0059 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6412 2.1375 0.0006 35 1 4.5268 2.8137 -1.0275 36 1 3.7622 3.2685 0.5141 37 1 5.2915 2.3578 0.5137 38 1 5.9073 0.8672 2.9712 39 1 4.6200 -0.1665 2.3155 40 1 5.7897 -1.0698 4.3772 41 1 5.7584 -2.1648 2.9807 42 1 8.1144 -0.4134 3.8383 43 1 8.0014 -2.1879 3.9945 44 1 8.7788 0.5058 -0.6229 45 1 7.9837 -1.0998 -0.7371 46 1 10.6725 -0.3743 0.4500 47 1 10.1537 -1.9072 -0.3045 48 1 13.1433 -2.0164 0.7455 49 1 4.2804 -2.7551 0.8847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049627261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:22 Heat of formation + Delta-G solvation = -28.150324 kcal Electronic energy + Delta-G solvation = -32060.735976 eV Core-core repulsion = 27987.979985 eV Total energy + Delta-G solvation = -4072.755991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -42.31983 -41.15197 -39.18160 -38.46671 -36.99066 -35.28514 -34.26428 -33.84739 -32.77545 -30.99275 -29.83089 -29.32667 -28.43691 -26.44496 -26.05205 -24.32063 -22.99336 -22.85133 -22.27582 -21.46920 -20.48395 -19.53920 -18.72618 -18.26617 -17.84453 -17.35258 -16.91892 -16.57084 -16.22994 -15.97017 -15.61545 -15.42878 -15.27823 -14.97166 -14.81052 -14.37304 -14.32109 -14.19259 -13.94420 -13.93426 -13.80598 -13.44669 -13.21447 -13.18963 -12.97711 -12.94201 -12.78014 -12.73820 -12.61270 -12.29714 -12.14330 -12.02126 -11.82706 -11.74002 -11.61365 -11.48882 -10.97859 -10.74407 -10.58978 -10.33049 -9.81497 -9.65641 -8.92722 -7.84618 -5.21819 -0.27918 0.04136 1.40423 1.45631 1.48181 1.56499 1.82122 2.34894 2.49941 2.54373 3.18773 3.34155 3.41744 3.56168 3.57137 3.86047 3.92213 3.97510 3.99839 4.02940 4.20719 4.21609 4.28195 4.30757 4.52410 4.52659 4.55160 4.59424 4.61099 4.65496 4.70293 4.84433 4.88201 4.97379 4.98571 5.03632 5.06029 5.10446 5.15511 5.20916 5.26570 5.37456 5.47653 5.53626 5.56685 5.57938 5.70186 6.16518 6.33580 6.42706 6.81958 7.03689 7.04820 7.74452 8.44595 9.27355 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.003000 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.965294 B = 9331.937550 C = 9632.003710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 C -0.171 4.171 4 C 0.007 3.993 5 C -0.121 4.121 6 C -0.212 4.212 7 C 0.578 3.422 8 O -0.566 6.566 9 N -0.587 5.587 10 C 0.109 3.891 11 C -0.119 4.119 12 C -0.109 4.109 13 C 0.154 3.846 14 H -0.002 1.002 15 C 0.133 3.867 16 H 0.087 0.913 17 C -0.115 4.115 18 C 0.184 3.816 19 N -0.611 5.611 20 C -0.232 4.232 21 H 0.091 0.909 22 C -0.070 4.070 23 N -0.956 5.956 24 Si 0.979 3.021 25 H -0.290 1.290 26 H -0.297 1.297 27 H -0.262 1.262 28 C 0.337 3.663 29 O -0.494 6.494 30 N -0.528 5.528 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.187 0.813 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.028 0.972 47 H -0.003 1.003 48 H 0.246 0.754 49 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.981 10.989 5.441 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.022 3.978 3 C -0.190 4.190 4 C -0.001 4.001 5 C -0.178 4.178 6 C -0.218 4.218 7 C 0.366 3.634 8 O -0.445 6.445 9 N -0.319 5.319 10 C -0.012 4.012 11 C -0.158 4.158 12 C -0.148 4.148 13 C 0.046 3.954 14 H 0.015 0.985 15 C 0.028 3.972 16 H 0.105 0.895 17 C -0.153 4.153 18 C 0.059 3.941 19 N -0.335 5.335 20 C -0.360 4.360 21 H 0.109 0.891 22 C -0.263 4.263 23 N -0.605 5.605 24 Si 0.808 3.192 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.186 1.186 28 C 0.158 3.842 29 O -0.304 6.304 30 N -0.249 5.249 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.204 0.796 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.015 0.985 48 H 0.055 0.945 49 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -26.888 10.156 4.314 29.064 hybrid contribution 2.260 -0.505 0.210 2.325 sum -24.628 9.651 4.523 26.835 Atomic orbital electron populations 1.20931 0.85434 1.05272 1.04448 1.21912 0.98689 0.86704 0.90499 1.22172 0.92581 1.00879 1.03340 1.20559 0.94733 0.93625 0.91200 1.20981 0.99803 0.93096 1.03881 1.20752 0.93273 0.95433 1.12382 1.18155 0.86884 0.75308 0.83100 1.90799 1.69745 1.51158 1.32827 1.48022 1.05851 1.71502 1.06509 1.21985 0.97046 1.00683 0.81519 1.21895 0.93877 0.98481 1.01519 1.21391 0.96126 1.02188 0.95068 1.20836 0.84802 0.93546 0.96222 0.98498 1.21957 0.79357 0.98678 0.97240 0.89522 1.22679 0.95912 1.00568 0.96180 1.21429 0.93014 0.94388 0.85276 1.44337 1.04448 1.68338 1.16395 1.19423 0.88681 1.29799 0.98109 0.89097 1.25712 0.99235 1.02538 0.98817 1.70188 1.15746 1.52579 1.21973 0.85061 0.77981 0.77439 0.78756 1.21744 1.22334 1.18609 1.19103 0.86860 0.84262 0.93934 1.84738 1.76994 1.33306 1.35315 1.67117 1.08500 1.32176 1.17078 0.89102 0.90526 0.86974 0.79600 0.90006 0.86505 0.92339 0.88882 0.88843 0.86813 0.91739 0.91357 0.92186 0.91608 0.91676 0.95337 0.98512 0.94497 0.72455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.16 71.24 0.72 -0.11 16 2 C 0.16 2.57 6.78 42.58 0.29 2.86 16 3 C -0.17 -2.21 9.41 22.32 0.21 -2.00 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -1.82 9.69 71.23 0.69 -1.13 16 6 C -0.21 -5.55 3.80 -19.91 -0.08 -5.63 16 7 C 0.58 19.04 5.30 86.69 0.46 19.49 16 8 O -0.57 -24.12 13.93 -4.02 -0.06 -24.17 16 9 N -0.59 -17.41 2.92 -796.00 -2.32 -19.73 16 10 C 0.11 2.15 6.31 86.03 0.54 2.69 16 11 C -0.12 -2.41 5.92 30.80 0.18 -2.23 16 12 C -0.11 -3.38 5.45 30.26 0.16 -3.22 16 13 C 0.15 6.35 2.58 45.33 0.12 6.47 16 14 H 0.00 -0.11 8.04 -2.39 -0.02 -0.13 16 15 C 0.13 4.99 3.28 45.94 0.15 5.14 16 16 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 17 C -0.11 -5.20 5.02 31.56 0.16 -5.04 16 18 C 0.18 9.99 5.47 86.85 0.48 10.46 16 19 N -0.61 -32.19 3.35 -671.30 -2.25 -34.44 16 20 C -0.23 -12.93 9.94 84.03 0.84 -12.09 16 21 H 0.09 4.73 7.31 -2.91 -0.02 4.71 16 22 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 23 N -0.96 -59.52 10.46 21.65 0.23 -59.29 16 24 Si 0.98 46.21 29.55 68.60 2.03 48.23 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.34 9.13 7.69 85.13 0.65 9.78 16 29 O -0.49 -14.34 13.01 -87.17 -1.13 -15.48 16 30 N -0.53 -12.60 10.28 -296.06 -3.04 -15.65 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 0.19 8.07 -2.39 -0.02 0.17 16 34 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 0.84 8.10 -2.39 -0.02 0.82 16 37 H 0.06 1.10 7.19 -2.39 -0.02 1.08 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.52 6.44 -2.39 -0.02 1.50 16 40 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 43 H 0.06 1.96 7.70 -2.39 -0.02 1.95 16 44 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.06 3.20 6.20 -2.39 -0.01 3.18 16 46 H 0.03 1.68 7.19 -2.39 -0.02 1.66 16 47 H 0.00 -0.21 7.81 -2.39 -0.02 -0.23 16 48 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 49 H 0.41 8.38 9.06 -74.06 -0.67 7.70 16 Total: -1.00 -83.14 385.81 -0.32 -83.46 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.30 Total: 15.21 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 5.93 Total: 21.85 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -7.39 Total: -129.11 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.19 Total: -39.65 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -83.14 -0.32 -83.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049627261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.311 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds