Wall clock time and date at job start Wed Apr 1 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40205 * 120.36610 * 2 1 4 4 C 1.35350 * 119.94341 * 179.77942 * 3 2 1 5 5 N 1.35758 * 120.70642 * 0.52083 * 4 3 2 6 6 C 1.46495 * 119.62824 * 179.72445 * 5 4 3 7 7 C 1.50697 * 109.47112 * 269.73077 * 6 5 4 8 8 O 1.21277 * 120.00231 * 0.02562 * 7 6 5 9 9 N 1.34787 * 119.99859 * 179.97438 * 7 6 5 10 10 C 1.47844 * 122.22869 * 0.02562 * 9 7 6 11 11 C 1.52716 * 111.06460 * 232.46409 * 10 9 7 12 12 C 1.53870 * 111.51951 * 311.47079 * 11 10 9 13 13 C 1.51078 * 107.34006 * 56.92698 * 12 11 10 14 14 H 1.09006 * 108.31017 * 51.23866 * 13 12 11 15 15 C 1.45719 * 122.22741 * 179.97438 * 9 7 6 16 16 H 1.08998 * 111.64178 * 240.86292 * 15 9 7 17 17 C 1.53437 * 116.37564 * 9.91312 * 15 9 7 18 18 C 1.55532 * 101.76028 * 152.52414 * 17 15 9 19 19 N 1.45034 * 119.18840 * 176.10984 * 13 12 11 20 20 C 1.36939 * 126.55732 * 331.18910 * 19 13 12 21 21 H 1.07997 * 120.00067 * 19.30790 * 20 19 13 22 22 C 1.38814 * 119.99883 * 199.29966 * 20 19 13 23 23 N 1.31618 * 120.00057 * 186.25877 * 22 20 19 24 24 Si 1.86802 * 119.99679 * 6.26547 * 22 20 19 25 25 H 1.48506 * 109.46992 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.46954 * 299.99349 * 24 22 20 27 27 H 1.48493 * 109.47358 * 59.99499 * 24 22 20 28 28 C 1.34664 * 120.74823 * 359.44898 * 5 4 3 29 29 O 1.22062 * 119.98795 * 180.27399 * 28 5 4 30 30 C 1.36396 * 120.36852 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46716 * 269.98255 * 1 2 3 32 32 H 1.09002 * 109.47602 * 29.97276 * 1 2 3 33 33 H 1.08999 * 109.47501 * 149.98136 * 1 2 3 34 34 H 1.07994 * 120.02609 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.64841 * 180.24820 * 4 3 2 36 36 H 1.08998 * 109.47364 * 149.72596 * 6 5 4 37 37 H 1.09007 * 109.46748 * 29.73200 * 6 5 4 38 38 H 1.09004 * 109.16198 * 352.87083 * 10 9 7 39 39 H 1.09006 * 109.16149 * 112.10971 * 10 9 7 40 40 H 1.09001 * 109.07094 * 71.99530 * 11 10 9 41 41 H 1.09002 * 109.07288 * 191.01741 * 11 10 9 42 42 H 1.09001 * 109.88651 * 297.46267 * 12 11 10 43 43 H 1.09007 * 109.88201 * 176.38642 * 12 11 10 44 44 H 1.09001 * 110.98406 * 270.81881 * 17 15 9 45 45 H 1.08992 * 110.99003 * 34.59336 * 17 15 9 46 46 H 1.09004 * 110.07957 * 218.31678 * 18 17 15 47 47 H 1.08996 * 109.87005 * 97.05943 * 18 17 15 48 48 H 0.97001 * 120.00079 * 5.09003 * 23 22 20 49 49 H 1.07998 * 120.34788 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5692 1.1997 0.0045 5 7 4.2538 0.0274 -0.0015 6 6 5.7187 0.0442 -0.0026 7 6 6.2200 0.0500 -1.4237 8 8 5.4313 0.0415 -2.3450 9 7 7.5449 0.0657 -1.6709 10 6 8.5493 0.0773 -0.5861 11 6 9.5459 1.2192 -0.7729 12 6 10.0941 1.2605 -2.2100 13 6 8.9101 1.3835 -3.1403 14 1 8.2916 2.2139 -2.7994 15 6 8.0827 0.0714 -3.0252 16 1 8.7001 -0.8063 -3.2163 17 6 7.0730 0.2954 -4.1587 18 6 7.9659 0.9431 -5.2552 19 7 9.1418 1.5301 -4.5645 20 6 10.2340 2.1042 -5.1583 21 1 11.1529 2.2189 -4.6025 22 6 10.1603 2.5384 -6.4747 23 7 11.2412 2.9762 -7.0848 24 14 8.5268 2.5014 -7.3802 25 1 8.7147 3.0139 -8.7613 26 1 8.0221 1.1059 -7.4340 27 1 7.5449 3.3556 -6.6650 28 6 3.6017 -1.1508 -0.0010 29 8 4.2312 -2.1965 -0.0015 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0004 35 1 4.1104 2.1344 0.0086 36 1 6.0926 -0.8415 0.5110 37 1 6.0721 0.9384 0.5111 38 1 8.0412 0.1987 0.3706 39 1 9.0880 -0.8704 -0.5872 40 1 9.0495 2.1646 -0.5538 41 1 10.3763 1.0842 -0.0798 42 1 10.6406 0.3422 -2.4249 43 1 10.7519 2.1213 -2.3313 44 1 6.6546 -0.6510 -4.5014 45 1 6.2833 0.9795 -3.8485 46 1 7.4120 1.7248 -5.7752 47 1 8.2915 0.1825 -5.9647 48 1 12.1023 2.9269 -6.6410 49 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049761234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:08 Heat of formation + Delta-G solvation = 16.467066 kcal Electronic energy + Delta-G solvation = -31503.996363 eV Core-core repulsion = 27433.175127 eV Total energy + Delta-G solvation = -4070.821236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.72297 -40.40027 -38.07388 -37.18643 -35.81477 -35.45251 -32.88744 -32.45119 -30.86876 -29.87608 -29.20676 -28.80814 -27.17991 -24.81700 -23.92955 -23.85961 -22.17079 -21.74366 -21.34305 -19.82603 -19.25959 -17.75714 -17.69607 -17.40192 -16.82853 -16.24214 -15.93739 -15.50800 -15.37662 -14.98244 -14.54111 -14.43981 -14.35029 -14.23662 -14.06640 -13.68280 -13.57202 -13.30839 -12.96415 -12.86463 -12.57435 -12.42474 -12.34108 -12.21027 -12.09908 -11.88847 -11.86821 -11.48106 -11.17389 -10.85756 -10.72491 -10.62548 -10.40083 -10.21129 -10.11024 -10.01217 -9.38148 -9.09534 -9.06092 -8.72778 -8.46792 -8.15981 -7.01073 -6.31190 -3.29057 0.60872 1.69411 2.23903 2.48800 2.92724 3.46058 3.47937 3.51643 3.72840 4.19983 4.24982 4.33007 4.46714 4.54481 4.62379 4.72179 4.80456 4.87815 4.97780 5.01394 5.07193 5.14356 5.17545 5.20874 5.27744 5.32022 5.49046 5.51017 5.52218 5.57175 5.71655 5.71841 5.80094 5.83210 5.89974 6.01489 6.14244 6.15308 6.20372 6.29418 6.42702 6.48694 6.52232 6.61926 6.85436 6.86255 6.94177 7.39538 7.71609 7.87774 8.09416 8.31692 9.00871 9.56208 10.24318 11.19320 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.003085 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.863903 B = 9072.694257 C =10128.667635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.230 4.230 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.071 3.929 7 C 0.505 3.495 8 O -0.520 6.520 9 N -0.595 5.595 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.160 3.840 14 H 0.022 0.978 15 C 0.116 3.884 16 H 0.085 0.915 17 C -0.115 4.115 18 C 0.103 3.897 19 N -0.602 5.602 20 C -0.318 4.318 21 H 0.077 0.923 22 C -0.018 4.018 23 N -0.931 5.931 24 Si 1.070 2.930 25 H -0.302 1.302 26 H -0.283 1.283 27 H -0.297 1.297 28 C 0.523 3.477 29 O -0.553 6.553 30 C -0.249 4.249 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.034 0.966 47 H 0.051 0.949 48 H 0.261 0.739 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.144 -3.651 21.212 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.191 5.191 6 C -0.055 4.055 7 C 0.291 3.709 8 O -0.395 6.395 9 N -0.329 5.329 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.153 4.153 13 C 0.051 3.949 14 H 0.039 0.961 15 C 0.012 3.988 16 H 0.103 0.897 17 C -0.153 4.153 18 C -0.021 4.021 19 N -0.328 5.328 20 C -0.445 4.445 21 H 0.095 0.905 22 C -0.218 4.218 23 N -0.572 5.572 24 Si 0.904 3.096 25 H -0.230 1.230 26 H -0.210 1.210 27 H -0.225 1.225 28 C 0.325 3.675 29 O -0.435 6.435 30 C -0.270 4.270 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.784 -3.895 19.236 25.824 hybrid contribution 0.925 -0.273 1.470 1.759 sum -15.858 -4.168 20.706 26.412 Atomic orbital electron populations 1.20926 0.90387 1.03634 1.02976 1.20203 0.96754 0.92671 0.89173 1.20518 0.92326 0.98934 1.13546 1.21899 0.93642 0.89496 0.93026 1.45049 1.07193 1.07304 1.59577 1.21868 0.79673 1.06916 0.97007 1.20484 0.82284 0.77237 0.90869 1.90745 1.54693 1.49004 1.45084 1.47910 1.04529 1.72525 1.07900 1.21794 0.90463 1.00005 0.89151 1.21911 0.98330 0.98235 0.98318 1.21394 0.98603 1.02674 0.92643 1.20737 0.94024 0.93440 0.86680 0.96110 1.22407 0.96106 0.99732 0.80537 0.89678 1.22684 0.96976 1.01668 0.93946 1.22678 0.88587 0.95728 0.95132 1.44395 1.20164 1.68915 0.99371 1.20110 0.89593 1.36882 0.97931 0.90484 1.25939 1.04887 0.96482 0.94452 1.70906 0.98833 1.47651 1.39820 0.83856 0.74455 0.76264 0.75005 1.22997 1.21022 1.22546 1.17075 0.89342 0.82406 0.78652 1.90952 1.69160 1.30279 1.53148 1.21899 0.92240 0.99533 1.13369 0.90166 0.90722 0.90821 0.83720 0.82184 0.85427 0.86297 0.90377 0.90928 0.91660 0.90507 0.91766 0.91078 0.91212 0.89274 0.94840 0.93125 0.92926 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.03 36.00 0.36 -0.33 16 2 C 0.02 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.80 9.71 -39.87 -0.39 -2.19 16 4 C 0.15 1.25 10.28 -16.84 -0.17 1.08 16 5 N -0.48 -5.48 2.07 -121.07 -0.25 -5.73 16 6 C 0.07 0.72 4.23 -5.20 -0.02 0.70 16 7 C 0.51 7.28 7.76 -10.98 -0.09 7.19 16 8 O -0.52 -9.47 13.26 5.56 0.07 -9.40 16 9 N -0.59 -8.35 2.91 -163.96 -0.48 -8.83 16 10 C 0.11 1.08 6.32 -3.45 -0.02 1.06 16 11 C -0.13 -1.42 5.92 -26.42 -0.16 -1.57 16 12 C -0.11 -1.86 5.38 -27.24 -0.15 -2.00 16 13 C 0.16 3.14 2.58 -68.33 -0.18 2.97 16 14 H 0.02 0.44 8.03 -51.93 -0.42 0.03 16 15 C 0.12 2.05 3.33 -66.77 -0.22 1.83 16 16 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.11 -2.25 5.01 -25.16 -0.13 -2.37 16 18 C 0.10 2.36 4.66 -1.61 -0.01 2.35 16 19 N -0.60 -14.70 3.23 -163.13 -0.53 -15.22 16 20 C -0.32 -8.95 10.27 -15.06 -0.15 -9.11 16 21 H 0.08 2.25 7.59 -52.49 -0.40 1.86 16 22 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 23 N -0.93 -29.27 13.70 55.49 0.76 -28.51 16 24 Si 1.07 27.48 24.61 -169.99 -4.18 23.30 16 25 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.28 -6.72 5.30 56.52 0.30 -6.42 16 27 H -0.30 -7.45 6.87 56.52 0.39 -7.07 16 28 C 0.52 7.39 7.40 -15.44 -0.11 7.28 16 29 O -0.55 -9.78 16.64 4.86 0.08 -9.70 16 30 C -0.25 -2.86 9.65 -39.38 -0.38 -3.24 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.16 0.87 8.03 -52.48 -0.42 0.45 16 36 H 0.13 1.26 7.26 -51.93 -0.38 0.88 16 37 H 0.12 0.70 7.62 -51.93 -0.40 0.31 16 38 H 0.08 0.51 6.18 -51.93 -0.32 0.19 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 43 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.09 1.81 6.20 -51.93 -0.32 1.49 16 46 H 0.03 0.81 4.11 -51.93 -0.21 0.60 16 47 H 0.05 1.19 6.75 -51.93 -0.35 0.84 16 48 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 49 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -38.08 377.27 -8.90 -46.98 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.54 Total: -1.10 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.52 Total: 2.53 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.49 Total: -58.29 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.15 Total: -19.10 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.18 Total: 23.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.08 -8.90 -46.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049761234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.446 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds