Wall clock time and date at job start Wed Apr 1 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40205 * 120.36610 * 2 1 4 4 C 1.35350 * 119.94341 * 179.77942 * 3 2 1 5 5 N 1.35758 * 120.70642 * 0.52083 * 4 3 2 6 6 C 1.46495 * 119.62824 * 179.72445 * 5 4 3 7 7 C 1.50697 * 109.47112 * 269.73077 * 6 5 4 8 8 O 1.21277 * 120.00231 * 0.02562 * 7 6 5 9 9 N 1.34787 * 119.99859 * 179.97438 * 7 6 5 10 10 C 1.47844 * 122.22869 * 0.02562 * 9 7 6 11 11 C 1.52716 * 111.06460 * 232.46409 * 10 9 7 12 12 C 1.53870 * 111.51951 * 311.47079 * 11 10 9 13 13 C 1.51078 * 107.34006 * 56.92698 * 12 11 10 14 14 H 1.09006 * 108.31017 * 51.23866 * 13 12 11 15 15 C 1.45719 * 122.22741 * 179.97438 * 9 7 6 16 16 H 1.08998 * 111.64178 * 240.86292 * 15 9 7 17 17 C 1.53437 * 116.37564 * 9.91312 * 15 9 7 18 18 C 1.55532 * 101.76028 * 152.52414 * 17 15 9 19 19 N 1.45034 * 119.18840 * 176.10984 * 13 12 11 20 20 C 1.36939 * 126.55732 * 331.18910 * 19 13 12 21 21 H 1.07997 * 120.00067 * 19.30790 * 20 19 13 22 22 C 1.38814 * 119.99883 * 199.29966 * 20 19 13 23 23 N 1.31618 * 120.00057 * 186.25877 * 22 20 19 24 24 Si 1.86802 * 119.99679 * 6.26547 * 22 20 19 25 25 H 1.48506 * 109.46992 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.46954 * 299.99349 * 24 22 20 27 27 H 1.48493 * 109.47358 * 59.99499 * 24 22 20 28 28 C 1.34664 * 120.74823 * 359.44898 * 5 4 3 29 29 O 1.22062 * 119.98795 * 180.27399 * 28 5 4 30 30 C 1.36396 * 120.36852 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46716 * 269.98255 * 1 2 3 32 32 H 1.09002 * 109.47602 * 29.97276 * 1 2 3 33 33 H 1.08999 * 109.47501 * 149.98136 * 1 2 3 34 34 H 1.07994 * 120.02609 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.64841 * 180.24820 * 4 3 2 36 36 H 1.08998 * 109.47364 * 149.72596 * 6 5 4 37 37 H 1.09007 * 109.46748 * 29.73200 * 6 5 4 38 38 H 1.09004 * 109.16198 * 352.87083 * 10 9 7 39 39 H 1.09006 * 109.16149 * 112.10971 * 10 9 7 40 40 H 1.09001 * 109.07094 * 71.99530 * 11 10 9 41 41 H 1.09002 * 109.07288 * 191.01741 * 11 10 9 42 42 H 1.09001 * 109.88651 * 297.46267 * 12 11 10 43 43 H 1.09007 * 109.88201 * 176.38642 * 12 11 10 44 44 H 1.09001 * 110.98406 * 270.81881 * 17 15 9 45 45 H 1.08992 * 110.99003 * 34.59336 * 17 15 9 46 46 H 1.09004 * 110.07957 * 218.31678 * 18 17 15 47 47 H 1.08996 * 109.87005 * 97.05943 * 18 17 15 48 48 H 0.97001 * 120.00079 * 5.09003 * 23 22 20 49 49 H 1.07998 * 120.34788 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5692 1.1997 0.0045 5 7 4.2538 0.0274 -0.0015 6 6 5.7187 0.0442 -0.0026 7 6 6.2200 0.0500 -1.4237 8 8 5.4313 0.0415 -2.3450 9 7 7.5449 0.0657 -1.6709 10 6 8.5493 0.0773 -0.5861 11 6 9.5459 1.2192 -0.7729 12 6 10.0941 1.2605 -2.2100 13 6 8.9101 1.3835 -3.1403 14 1 8.2916 2.2139 -2.7994 15 6 8.0827 0.0714 -3.0252 16 1 8.7001 -0.8063 -3.2163 17 6 7.0730 0.2954 -4.1587 18 6 7.9659 0.9431 -5.2552 19 7 9.1418 1.5301 -4.5645 20 6 10.2340 2.1042 -5.1583 21 1 11.1529 2.2189 -4.6025 22 6 10.1603 2.5384 -6.4747 23 7 11.2412 2.9762 -7.0848 24 14 8.5268 2.5014 -7.3802 25 1 8.7147 3.0139 -8.7613 26 1 8.0221 1.1059 -7.4340 27 1 7.5449 3.3556 -6.6650 28 6 3.6017 -1.1508 -0.0010 29 8 4.2312 -2.1965 -0.0015 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0004 35 1 4.1104 2.1344 0.0086 36 1 6.0926 -0.8415 0.5110 37 1 6.0721 0.9384 0.5111 38 1 8.0412 0.1987 0.3706 39 1 9.0880 -0.8704 -0.5872 40 1 9.0495 2.1646 -0.5538 41 1 10.3763 1.0842 -0.0798 42 1 10.6406 0.3422 -2.4249 43 1 10.7519 2.1213 -2.3313 44 1 6.6546 -0.6510 -4.5014 45 1 6.2833 0.9795 -3.8485 46 1 7.4120 1.7248 -5.7752 47 1 8.2915 0.1825 -5.9647 48 1 12.1023 2.9269 -6.6410 49 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049761234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:03 Heat of formation + Delta-G solvation = -9.982950 kcal Electronic energy + Delta-G solvation = -31505.143322 eV Core-core repulsion = 27433.175127 eV Total energy + Delta-G solvation = -4071.968195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -42.60007 -41.61477 -39.42348 -38.08778 -37.18832 -36.24539 -34.62835 -33.99754 -31.94098 -31.01760 -30.32024 -30.13107 -28.02435 -26.11184 -25.67181 -24.64861 -23.50112 -22.82708 -22.45315 -21.48513 -20.41591 -19.39074 -18.52319 -18.49475 -17.95443 -17.36693 -17.02198 -16.90175 -16.45421 -16.40437 -15.94554 -15.76790 -15.47661 -15.16455 -15.07149 -14.81555 -14.61469 -14.55659 -14.17000 -14.05297 -13.61884 -13.57820 -13.54886 -13.33273 -13.17802 -12.99476 -12.81164 -12.74060 -12.46041 -12.44115 -12.14990 -11.94510 -11.84280 -11.61347 -11.28493 -11.20198 -11.09006 -10.95876 -10.76550 -10.37809 -9.70181 -9.08932 -8.97367 -8.64259 -5.54748 -0.11475 0.92800 1.38498 1.40560 1.43587 1.44591 1.65943 1.93841 2.49606 2.65440 3.01919 3.16823 3.30551 3.60717 3.69042 3.73344 3.80292 3.84206 3.88800 3.97352 4.05329 4.10104 4.14475 4.16335 4.33282 4.34391 4.34662 4.40034 4.57293 4.62242 4.66759 4.75687 4.78989 4.83603 4.88521 4.90718 4.95060 5.06492 5.11753 5.15882 5.20365 5.24932 5.36901 5.46610 5.49932 5.64115 5.66735 6.06229 6.08844 6.33290 6.76217 6.95450 7.02680 7.42439 8.10144 8.87935 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.003085 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.863903 B = 9072.694257 C =10128.667635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.231 4.231 4 C 0.139 3.861 5 N -0.483 5.483 6 C 0.076 3.924 7 C 0.500 3.500 8 O -0.565 6.565 9 N -0.595 5.595 10 C 0.102 3.898 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.152 3.848 14 H 0.015 0.985 15 C 0.130 3.870 16 H 0.081 0.919 17 C -0.101 4.101 18 C 0.097 3.903 19 N -0.622 5.622 20 C -0.296 4.296 21 H 0.056 0.944 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 1.104 2.896 25 H -0.310 1.310 26 H -0.257 1.257 27 H -0.289 1.289 28 C 0.504 3.496 29 O -0.610 6.610 30 C -0.291 4.291 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.180 0.820 35 H 0.199 0.801 36 H 0.133 0.867 37 H 0.174 0.826 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.026 0.974 47 H 0.041 0.959 48 H 0.249 0.751 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.352 -2.763 24.511 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.028 3.972 3 C -0.253 4.253 4 C 0.013 3.987 5 N -0.192 5.192 6 C -0.049 4.049 7 C 0.288 3.712 8 O -0.444 6.444 9 N -0.328 5.328 10 C -0.018 4.018 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.044 3.956 14 H 0.033 0.967 15 C 0.024 3.976 16 H 0.099 0.901 17 C -0.139 4.139 18 C -0.027 4.027 19 N -0.349 5.349 20 C -0.425 4.425 21 H 0.074 0.926 22 C -0.268 4.268 23 N -0.612 5.612 24 Si 0.933 3.067 25 H -0.239 1.239 26 H -0.183 1.183 27 H -0.217 1.217 28 C 0.310 3.690 29 O -0.498 6.498 30 C -0.312 4.312 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.197 0.803 35 H 0.216 0.784 36 H 0.151 0.849 37 H 0.191 0.809 38 H 0.144 0.856 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.044 0.956 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.010 -2.997 22.617 29.697 hybrid contribution 1.579 -0.479 0.530 1.733 sum -17.432 -3.476 23.147 29.184 Atomic orbital electron populations 1.21035 0.88081 1.04456 1.04367 1.20627 0.98473 0.92110 0.85945 1.21040 0.92464 0.99801 1.11964 1.22641 0.94408 0.89687 0.91917 1.45082 1.07866 1.07430 1.58796 1.22061 0.79097 1.09708 0.94033 1.21265 0.81757 0.75834 0.92352 1.90719 1.55792 1.50962 1.46924 1.48001 1.05476 1.72210 1.07069 1.22158 0.89903 1.00079 0.89669 1.21876 0.99664 0.99290 0.94721 1.21407 0.97028 1.01208 0.95630 1.20984 0.95919 0.94210 0.84437 0.96731 1.22012 0.94955 0.98185 0.82428 0.90091 1.22523 0.96466 1.01236 0.93698 1.22716 0.88475 0.95307 0.96197 1.44507 1.19515 1.68872 1.01973 1.20021 0.90022 1.34948 0.97506 0.92617 1.26995 1.06716 0.97146 0.95956 1.70988 0.98957 1.50704 1.40507 0.83442 0.71841 0.77789 0.73617 1.23896 1.18261 1.21713 1.17470 0.90233 0.82629 0.78666 1.90897 1.70197 1.32143 1.56522 1.21898 0.91649 1.00713 1.16963 0.88271 0.88959 0.90951 0.80283 0.78445 0.84932 0.80907 0.85565 0.89908 0.90731 0.87216 0.92448 0.93524 0.90935 0.89669 0.95611 0.94127 0.94158 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.03 71.24 0.71 -0.31 16 2 C 0.03 0.50 5.89 -19.82 -0.12 0.38 16 3 C -0.23 -2.71 9.71 22.08 0.21 -2.50 16 4 C 0.14 1.83 10.28 83.42 0.86 2.69 16 5 N -0.48 -9.76 2.07 -655.07 -1.36 -11.11 16 6 C 0.08 1.24 4.23 85.63 0.36 1.61 16 7 C 0.50 13.06 7.76 87.65 0.68 13.74 16 8 O -0.57 -19.86 13.26 -3.02 -0.04 -19.90 16 9 N -0.59 -14.97 2.91 -791.05 -2.30 -17.28 16 10 C 0.10 1.58 6.32 86.03 0.54 2.12 16 11 C -0.12 -2.10 5.92 30.79 0.18 -1.91 16 12 C -0.11 -3.56 5.38 30.26 0.16 -3.40 16 13 C 0.15 5.86 2.58 45.52 0.12 5.98 16 14 H 0.02 0.61 8.03 -2.38 -0.02 0.59 16 15 C 0.13 4.41 3.33 46.16 0.15 4.57 16 16 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 17 C -0.10 -3.90 5.01 31.61 0.16 -3.74 16 18 C 0.10 4.44 4.66 86.87 0.41 4.84 16 19 N -0.62 -30.61 3.23 -670.02 -2.16 -32.77 16 20 C -0.30 -17.14 10.27 84.03 0.86 -16.27 16 21 H 0.06 3.40 7.59 -2.91 -0.02 3.38 16 22 C -0.07 -4.55 5.50 84.86 0.47 -4.09 16 23 N -0.97 -62.93 13.70 21.65 0.30 -62.63 16 24 Si 1.10 56.48 24.61 68.60 1.69 58.17 16 25 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 26 H -0.26 -11.95 5.30 99.48 0.53 -11.42 16 27 H -0.29 -14.25 6.87 99.48 0.68 -13.56 16 28 C 0.50 14.11 7.40 84.82 0.63 14.73 16 29 O -0.61 -22.13 16.64 -5.52 -0.09 -22.23 16 30 C -0.29 -6.63 9.65 22.40 0.22 -6.42 16 31 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 33 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 34 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.20 1.01 8.03 -2.91 -0.02 0.99 16 36 H 0.13 2.15 7.26 -2.39 -0.02 2.14 16 37 H 0.17 0.91 7.62 -2.38 -0.02 0.89 16 38 H 0.13 0.82 6.18 -2.38 -0.01 0.80 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 43 H 0.05 1.66 7.85 -2.38 -0.02 1.64 16 44 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.08 3.40 6.20 -2.39 -0.01 3.38 16 46 H 0.03 1.24 4.11 -2.38 -0.01 1.23 16 47 H 0.04 1.91 6.75 -2.39 -0.02 1.90 16 48 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 49 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -90.67 377.27 3.35 -87.32 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.71 Total: 8.42 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.61 Total: 12.01 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -5.53 Total: -123.79 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.13 Total: -42.13 kcal Atomic # 14 Polarization: 56.48 SS G_CDS: 1.69 Total: 58.17 kcal Total: -90.67 3.35 -87.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049761234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.339 kcal (2) G-P(sol) polarization free energy of solvation -90.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds