Wall clock time and date at job start Wed Apr 1 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40202 * 120.37010 * 2 1 4 4 C 1.35349 * 119.94659 * 179.77366 * 3 2 1 5 5 N 1.35760 * 120.70346 * 0.52959 * 4 3 2 6 6 C 1.46496 * 119.62257 * 179.71945 * 5 4 3 7 7 C 1.50701 * 109.47327 * 269.72837 * 6 5 4 8 8 O 1.21276 * 119.99513 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00119 * 180.02562 * 7 6 5 10 10 C 1.45737 * 117.75997 * 359.97438 * 9 7 6 11 11 C 1.53058 * 109.53993 * 141.11980 * 10 9 7 12 12 C 1.52887 * 108.50737 * 53.82488 * 11 10 9 13 13 C 1.52926 * 109.77576 * 293.97274 * 12 11 10 14 14 H 1.08999 * 111.26615 * 293.37237 * 13 12 11 15 15 C 1.44188 * 117.75956 * 179.97438 * 9 7 6 16 16 H 1.09000 * 109.22457 * 332.60184 * 15 9 7 17 17 C 1.54059 * 111.76883 * 93.50735 * 15 9 7 18 18 C 1.54057 * 103.74839 * 153.24819 * 17 15 9 19 19 N 1.46888 * 107.70827 * 342.87822 * 18 17 15 20 20 C 1.36933 * 125.58436 * 177.01693 * 19 18 17 21 21 H 1.07999 * 120.00147 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99796 * 0.02562 * 20 19 18 23 23 N 1.31615 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99609 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46884 * 120.00800 * 24 22 20 27 27 H 1.48499 * 109.46942 * 240.00250 * 24 22 20 28 28 C 1.34661 * 120.74910 * 359.44241 * 5 4 3 29 29 O 1.22058 * 119.97955 * 180.27283 * 28 5 4 30 30 C 1.36400 * 120.36838 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46530 * 269.97650 * 1 2 3 32 32 H 1.08995 * 109.47126 * 29.97153 * 1 2 3 33 33 H 1.09001 * 109.47500 * 149.98053 * 1 2 3 34 34 H 1.07996 * 120.01929 * 0.02569 * 3 2 1 35 35 H 1.08005 * 119.64428 * 180.24895 * 4 3 2 36 36 H 1.09004 * 109.47339 * 149.72418 * 6 5 4 37 37 H 1.09008 * 109.47227 * 29.72932 * 6 5 4 38 38 H 1.09002 * 109.45940 * 261.14040 * 10 9 7 39 39 H 1.09000 * 109.45877 * 21.10488 * 10 9 7 40 40 H 1.09002 * 109.62754 * 173.50185 * 11 10 9 41 41 H 1.08997 * 109.63298 * 294.10555 * 11 10 9 42 42 H 1.09009 * 109.41417 * 173.89156 * 12 11 10 43 43 H 1.08997 * 109.38990 * 54.04862 * 12 11 10 44 44 H 1.09002 * 110.57499 * 271.81339 * 17 15 9 45 45 H 1.09001 * 110.57474 * 34.68609 * 17 15 9 46 46 H 1.09003 * 109.80646 * 102.42274 * 18 17 15 47 47 H 1.08993 * 109.81778 * 223.32408 * 18 17 15 48 48 H 0.96992 * 120.00197 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.34766 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0046 5 7 4.2538 0.0273 -0.0015 6 6 5.7187 0.0441 -0.0025 7 6 6.2201 0.0500 -1.4237 8 8 5.4313 0.0414 -2.3449 9 7 7.5448 0.0647 -1.6708 10 6 8.4486 0.0751 -0.5276 11 6 9.6569 -0.8170 -0.8221 12 6 10.2828 -0.3660 -2.1421 13 6 9.3115 -0.6322 -3.2929 14 1 9.1620 -1.7012 -3.4447 15 6 7.9710 0.0691 -3.0483 16 1 7.2095 -0.4132 -3.6611 17 6 8.2075 1.4997 -3.5686 18 6 9.2498 1.3146 -4.6879 19 7 9.8654 -0.0073 -4.5110 20 6 10.7996 -0.5685 -5.3399 21 1 11.1932 -1.5507 -5.1234 22 6 11.2409 0.1250 -6.4586 23 7 10.7617 1.3221 -6.7221 24 14 12.5149 -0.6411 -7.5898 25 1 12.8893 -1.9833 -7.0766 26 1 11.9477 -0.7742 -8.9557 27 1 13.7200 0.2254 -7.6366 28 6 3.6016 -1.1509 -0.0010 29 8 4.2312 -2.1965 -0.0015 30 6 2.1966 -1.1768 -0.0005 31 1 -0.3632 -0.0004 1.0278 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0004 35 1 4.1104 2.1343 0.0087 36 1 6.0926 -0.8416 0.5111 37 1 6.0722 0.9383 0.5112 38 1 8.7866 1.0944 -0.3411 39 1 7.9258 -0.3007 0.3520 40 1 10.3876 -0.7206 -0.0190 41 1 9.3344 -1.8548 -0.9053 42 1 11.2068 -0.9188 -2.3125 43 1 10.5026 0.7004 -2.0926 44 1 7.2848 1.9188 -3.9700 45 1 8.6048 2.1346 -2.7766 46 1 8.7605 1.3671 -5.6605 47 1 10.0123 2.0900 -4.6147 48 1 11.0703 1.8068 -7.5035 49 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049761235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:12 Heat of formation + Delta-G solvation = 0.974296 kcal Electronic energy + Delta-G solvation = -31175.478957 eV Core-core repulsion = 27103.985905 eV Total energy + Delta-G solvation = -4071.493053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.69503 -40.31383 -37.99594 -37.14334 -35.48761 -35.41778 -32.66163 -32.38978 -30.76450 -29.73564 -29.01437 -28.46185 -27.05084 -24.48335 -24.41752 -23.88861 -22.12178 -21.86304 -20.61003 -19.99501 -18.24579 -17.78961 -17.70632 -17.32394 -16.92719 -16.19181 -15.84471 -15.37109 -15.10704 -14.79025 -14.51566 -14.38115 -14.15788 -13.96997 -13.81702 -13.56510 -13.42688 -13.18901 -12.94526 -12.71973 -12.48351 -12.31375 -12.05536 -12.03334 -11.90903 -11.82930 -11.44483 -11.11677 -10.98701 -10.80230 -10.69563 -10.53572 -10.32551 -10.10209 -10.06857 -10.02030 -9.67664 -9.61399 -9.50401 -8.62211 -8.41070 -8.12155 -6.88459 -5.72960 -3.07621 0.64804 1.73236 2.30384 2.54387 3.06948 3.39053 3.44830 3.47112 3.53845 4.27374 4.31006 4.36868 4.46734 4.50379 4.72475 4.81594 4.87627 5.00730 5.03288 5.12198 5.21762 5.23466 5.31553 5.36550 5.42212 5.49528 5.53914 5.58929 5.63877 5.75055 5.84552 5.87649 5.95303 6.04679 6.17487 6.18601 6.27863 6.32097 6.34374 6.51523 6.53948 6.70910 6.90656 6.92739 7.04374 7.40428 7.55175 7.61210 7.81433 7.92857 8.16410 8.23991 9.19394 9.79003 10.43608 11.38078 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.002534 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.805716 B =11047.162394 C =11498.283002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 C -0.231 4.231 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.071 3.929 7 C 0.493 3.507 8 O -0.526 6.526 9 N -0.581 5.581 10 C 0.105 3.895 11 C -0.132 4.132 12 C -0.129 4.129 13 C 0.160 3.840 14 H 0.055 0.945 15 C 0.136 3.864 16 H 0.091 0.909 17 C -0.148 4.148 18 C 0.179 3.821 19 N -0.596 5.596 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.522 3.478 29 O -0.551 6.551 30 C -0.248 4.248 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.041 0.959 48 H 0.252 0.748 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.057 3.023 20.000 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.254 4.254 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.054 4.054 7 C 0.278 3.722 8 O -0.401 6.401 9 N -0.313 5.313 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.170 4.170 13 C 0.052 3.948 14 H 0.073 0.927 15 C 0.032 3.968 16 H 0.109 0.891 17 C -0.188 4.188 18 C 0.054 3.946 19 N -0.320 5.320 20 C -0.355 4.355 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.324 3.676 29 O -0.433 6.433 30 C -0.270 4.270 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.877 2.389 19.246 24.442 hybrid contribution 0.830 -0.132 -0.688 1.086 sum -14.046 2.256 18.558 23.384 Atomic orbital electron populations 1.20921 0.90413 1.03605 1.02949 1.20196 0.96729 0.92683 0.89296 1.20503 0.92328 0.98894 1.13702 1.21889 0.93625 0.89508 0.93030 1.45077 1.07274 1.07296 1.59519 1.21923 0.79562 1.06964 0.96995 1.20681 0.83145 0.77494 0.90897 1.90747 1.54873 1.48883 1.45636 1.47057 1.05033 1.72092 1.07165 1.21592 0.92038 1.00689 0.87465 1.21836 0.96409 0.99525 0.99330 1.22094 0.99832 1.01654 0.93387 1.20931 0.89758 0.95992 0.88145 0.92678 1.21146 0.98182 0.97774 0.79739 0.89102 1.22975 1.00479 0.95470 0.99862 1.21060 0.91966 0.87471 0.94067 1.44521 1.47063 1.15755 1.24676 1.19067 1.13853 1.00063 1.02468 0.90323 1.24809 1.00281 0.96743 0.98522 1.69974 1.45867 1.12336 1.28599 0.86038 0.80786 0.78190 0.80703 1.20487 1.21738 1.21778 1.17082 0.89355 0.82440 0.78689 1.90959 1.69132 1.30270 1.52985 1.21905 0.92254 0.99543 1.13270 0.90191 0.90758 0.90830 0.83762 0.82204 0.85272 0.86217 0.91449 0.90548 0.90895 0.91473 0.91706 0.91891 0.92011 0.92584 0.92964 0.94100 0.93770 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.03 36.00 0.36 -0.35 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.83 9.71 -39.87 -0.39 -2.22 16 4 C 0.15 1.27 10.28 -16.84 -0.17 1.10 16 5 N -0.48 -5.67 2.07 -121.06 -0.25 -5.92 16 6 C 0.07 0.75 4.14 -5.20 -0.02 0.73 16 7 C 0.49 7.46 7.65 -10.99 -0.08 7.37 16 8 O -0.53 -10.26 15.71 5.56 0.09 -10.17 16 9 N -0.58 -8.66 2.80 -167.56 -0.47 -9.12 16 10 C 0.10 1.15 6.06 -4.42 -0.03 1.13 16 11 C -0.13 -1.64 6.10 -26.76 -0.16 -1.80 16 12 C -0.13 -2.20 5.31 -26.83 -0.14 -2.34 16 13 C 0.16 3.27 3.29 -67.19 -0.22 3.05 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.14 2.56 2.72 -68.48 -0.19 2.38 16 16 H 0.09 1.98 7.10 -51.93 -0.37 1.61 16 17 C -0.15 -2.89 6.45 -25.63 -0.17 -3.06 16 18 C 0.18 4.37 5.39 -3.28 -0.02 4.35 16 19 N -0.60 -14.92 2.94 -163.71 -0.48 -15.40 16 20 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -26.94 10.29 55.49 0.57 -26.37 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 C 0.52 7.64 7.40 -15.45 -0.11 7.53 16 29 O -0.55 -10.11 16.64 4.87 0.08 -10.03 16 30 C -0.25 -2.94 9.65 -39.38 -0.38 -3.32 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.16 0.85 8.03 -52.48 -0.42 0.42 16 36 H 0.13 1.35 6.56 -51.93 -0.34 1.01 16 37 H 0.12 0.72 7.90 -51.92 -0.41 0.31 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.60 5.81 -51.93 -0.30 0.30 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 43 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.43 7.25 -51.93 -0.38 1.06 16 47 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -36.64 389.00 -9.85 -46.50 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.64 Total: 0.18 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.59 Total: 7.39 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.63 Total: -56.82 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.64 -9.85 -46.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049761235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.470 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds