Wall clock time and date at job start Wed Apr 1 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40202 * 120.37010 * 2 1 4 4 C 1.35349 * 119.94659 * 179.77366 * 3 2 1 5 5 N 1.35760 * 120.70346 * 0.52959 * 4 3 2 6 6 C 1.46496 * 119.62257 * 179.71945 * 5 4 3 7 7 C 1.50701 * 109.47327 * 269.72837 * 6 5 4 8 8 O 1.21276 * 119.99513 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00119 * 180.02562 * 7 6 5 10 10 C 1.45737 * 117.75997 * 359.97438 * 9 7 6 11 11 C 1.53058 * 109.53993 * 141.11980 * 10 9 7 12 12 C 1.52887 * 108.50737 * 53.82488 * 11 10 9 13 13 C 1.52926 * 109.77576 * 293.97274 * 12 11 10 14 14 H 1.08999 * 111.26615 * 293.37237 * 13 12 11 15 15 C 1.44188 * 117.75956 * 179.97438 * 9 7 6 16 16 H 1.09000 * 109.22457 * 332.60184 * 15 9 7 17 17 C 1.54059 * 111.76883 * 93.50735 * 15 9 7 18 18 C 1.54057 * 103.74839 * 153.24819 * 17 15 9 19 19 N 1.46888 * 107.70827 * 342.87822 * 18 17 15 20 20 C 1.36933 * 125.58436 * 177.01693 * 19 18 17 21 21 H 1.07999 * 120.00147 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99796 * 0.02562 * 20 19 18 23 23 N 1.31615 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99609 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46884 * 120.00800 * 24 22 20 27 27 H 1.48499 * 109.46942 * 240.00250 * 24 22 20 28 28 C 1.34661 * 120.74910 * 359.44241 * 5 4 3 29 29 O 1.22058 * 119.97955 * 180.27283 * 28 5 4 30 30 C 1.36400 * 120.36838 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46530 * 269.97650 * 1 2 3 32 32 H 1.08995 * 109.47126 * 29.97153 * 1 2 3 33 33 H 1.09001 * 109.47500 * 149.98053 * 1 2 3 34 34 H 1.07996 * 120.01929 * 0.02569 * 3 2 1 35 35 H 1.08005 * 119.64428 * 180.24895 * 4 3 2 36 36 H 1.09004 * 109.47339 * 149.72418 * 6 5 4 37 37 H 1.09008 * 109.47227 * 29.72932 * 6 5 4 38 38 H 1.09002 * 109.45940 * 261.14040 * 10 9 7 39 39 H 1.09000 * 109.45877 * 21.10488 * 10 9 7 40 40 H 1.09002 * 109.62754 * 173.50185 * 11 10 9 41 41 H 1.08997 * 109.63298 * 294.10555 * 11 10 9 42 42 H 1.09009 * 109.41417 * 173.89156 * 12 11 10 43 43 H 1.08997 * 109.38990 * 54.04862 * 12 11 10 44 44 H 1.09002 * 110.57499 * 271.81339 * 17 15 9 45 45 H 1.09001 * 110.57474 * 34.68609 * 17 15 9 46 46 H 1.09003 * 109.80646 * 102.42274 * 18 17 15 47 47 H 1.08993 * 109.81778 * 223.32408 * 18 17 15 48 48 H 0.96992 * 120.00197 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.34766 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0046 5 7 4.2538 0.0273 -0.0015 6 6 5.7187 0.0441 -0.0025 7 6 6.2201 0.0500 -1.4237 8 8 5.4313 0.0414 -2.3449 9 7 7.5448 0.0647 -1.6708 10 6 8.4486 0.0751 -0.5276 11 6 9.6569 -0.8170 -0.8221 12 6 10.2828 -0.3660 -2.1421 13 6 9.3115 -0.6322 -3.2929 14 1 9.1620 -1.7012 -3.4447 15 6 7.9710 0.0691 -3.0483 16 1 7.2095 -0.4132 -3.6611 17 6 8.2075 1.4997 -3.5686 18 6 9.2498 1.3146 -4.6879 19 7 9.8654 -0.0073 -4.5110 20 6 10.7996 -0.5685 -5.3399 21 1 11.1932 -1.5507 -5.1234 22 6 11.2409 0.1250 -6.4586 23 7 10.7617 1.3221 -6.7221 24 14 12.5149 -0.6411 -7.5898 25 1 12.8893 -1.9833 -7.0766 26 1 11.9477 -0.7742 -8.9557 27 1 13.7200 0.2254 -7.6366 28 6 3.6016 -1.1509 -0.0010 29 8 4.2312 -2.1965 -0.0015 30 6 2.1966 -1.1768 -0.0005 31 1 -0.3632 -0.0004 1.0278 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6822 2.1486 0.0004 35 1 4.1104 2.1343 0.0087 36 1 6.0926 -0.8416 0.5111 37 1 6.0722 0.9383 0.5112 38 1 8.7866 1.0944 -0.3411 39 1 7.9258 -0.3007 0.3520 40 1 10.3876 -0.7206 -0.0190 41 1 9.3344 -1.8548 -0.9053 42 1 11.2068 -0.9188 -2.3125 43 1 10.5026 0.7004 -2.0926 44 1 7.2848 1.9188 -3.9700 45 1 8.6048 2.1346 -2.7766 46 1 8.7605 1.3671 -5.6605 47 1 10.0123 2.0900 -4.6147 48 1 11.0703 1.8068 -7.5035 49 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049761235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:11 Heat of formation + Delta-G solvation = -22.850811 kcal Electronic energy + Delta-G solvation = -31176.512092 eV Core-core repulsion = 27103.985905 eV Total energy + Delta-G solvation = -4072.526187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.61998 -41.56213 -39.44547 -38.08532 -36.96181 -36.24314 -34.29771 -33.97130 -31.71202 -30.91028 -30.39054 -29.86959 -27.98151 -26.32471 -25.77033 -24.63870 -23.38266 -22.80798 -22.13225 -21.52302 -19.60062 -18.88623 -18.79717 -18.50956 -18.29887 -17.06796 -16.99959 -16.83271 -16.48907 -16.24965 -16.02126 -15.35477 -15.16636 -15.10215 -14.97924 -14.82544 -14.44889 -14.21466 -14.12812 -13.94578 -13.63586 -13.52608 -13.31993 -13.15542 -13.01346 -12.88611 -12.81442 -12.68336 -12.45359 -12.37912 -12.32159 -12.03058 -11.94432 -11.69117 -11.59991 -11.23548 -11.15732 -11.07680 -10.74103 -10.52728 -9.70053 -8.96848 -8.94285 -7.87557 -5.24097 -0.10385 0.93780 1.39626 1.43226 1.44689 1.45859 1.54767 1.98141 2.46670 2.67239 3.27729 3.32301 3.54951 3.63785 3.74520 3.80764 3.84435 3.89993 3.96386 4.04473 4.10626 4.13146 4.15927 4.31577 4.35692 4.40880 4.56219 4.58060 4.61998 4.75808 4.81109 4.82176 4.84484 4.91641 4.94343 5.03632 5.12295 5.17042 5.25626 5.33385 5.38882 5.50603 5.52581 5.59881 5.61523 5.68209 5.70819 6.07246 6.15842 6.26244 6.96307 7.02759 7.06619 7.72395 8.36305 9.22481 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.002534 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.805716 B =11047.162394 C =11498.283002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.231 4.231 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.077 3.923 7 C 0.488 3.512 8 O -0.579 6.579 9 N -0.580 5.580 10 C 0.097 3.903 11 C -0.124 4.124 12 C -0.118 4.118 13 C 0.154 3.846 14 H 0.038 0.962 15 C 0.154 3.846 16 H 0.051 0.949 17 C -0.128 4.128 18 C 0.191 3.809 19 N -0.617 5.617 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.502 3.498 29 O -0.611 6.611 30 C -0.293 4.293 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.183 0.817 35 H 0.203 0.797 36 H 0.134 0.866 37 H 0.181 0.819 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.008 0.992 47 H 0.014 0.986 48 H 0.247 0.753 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 4.861 23.505 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.253 4.253 4 C 0.014 3.986 5 N -0.193 5.193 6 C -0.048 4.048 7 C 0.276 3.724 8 O -0.458 6.458 9 N -0.312 5.312 10 C -0.023 4.023 11 C -0.163 4.163 12 C -0.158 4.158 13 C 0.047 3.953 14 H 0.056 0.944 15 C 0.048 3.952 16 H 0.069 0.931 17 C -0.168 4.168 18 C 0.065 3.935 19 N -0.341 5.341 20 C -0.365 4.365 21 H 0.099 0.901 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.807 3.193 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.215 1.215 28 C 0.308 3.692 29 O -0.499 6.499 30 C -0.315 4.315 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.220 0.780 36 H 0.151 0.849 37 H 0.198 0.802 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.026 0.974 47 H 0.032 0.968 48 H 0.056 0.944 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.478 4.241 22.829 27.905 hybrid contribution 0.911 -0.663 -1.786 2.111 sum -14.567 3.579 21.043 25.842 Atomic orbital electron populations 1.21036 0.88023 1.04446 1.04402 1.20646 0.98513 0.92121 0.85844 1.21059 0.92471 0.99781 1.12006 1.22708 0.94440 0.89711 0.91729 1.45117 1.07948 1.07493 1.58724 1.22150 0.79037 1.09994 0.93618 1.21546 0.82488 0.75842 0.92486 1.90728 1.56175 1.51141 1.47787 1.47090 1.06027 1.71813 1.06228 1.22031 0.91082 1.02283 0.86943 1.21818 0.97706 0.99364 0.97386 1.21868 0.98288 1.01155 0.94484 1.21136 0.91427 0.94843 0.87933 0.94441 1.20558 0.95916 0.96405 0.82284 0.93108 1.22746 0.98809 0.96415 0.98788 1.20742 0.91977 0.86766 0.93980 1.44771 1.46898 1.16301 1.26172 1.19406 1.13980 1.00173 1.02920 0.90124 1.25645 1.02628 0.97403 1.00186 1.70188 1.47262 1.13618 1.28904 0.85009 0.78197 0.77900 0.78219 1.19062 1.22224 1.21545 1.17510 0.90314 0.82699 0.78710 1.90900 1.70229 1.32257 1.56556 1.21891 0.91612 1.00783 1.17189 0.88193 0.88834 0.91086 0.80025 0.78019 0.84863 0.80190 0.88641 0.86249 0.87100 0.92092 0.93205 0.92434 0.92037 0.89723 0.97383 0.96776 0.94374 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.03 71.24 0.71 -0.38 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -2.78 9.71 22.08 0.21 -2.56 16 4 C 0.14 1.88 10.28 83.42 0.86 2.74 16 5 N -0.48 -10.36 2.07 -655.06 -1.36 -11.72 16 6 C 0.08 1.35 4.14 85.63 0.35 1.71 16 7 C 0.49 13.94 7.65 87.66 0.67 14.61 16 8 O -0.58 -22.77 15.71 -3.02 -0.05 -22.81 16 9 N -0.58 -16.08 2.80 -802.43 -2.25 -18.33 16 10 C 0.10 1.68 6.06 86.54 0.52 2.21 16 11 C -0.12 -2.65 6.10 30.58 0.19 -2.47 16 12 C -0.12 -3.89 5.31 30.53 0.16 -3.73 16 13 C 0.15 6.42 3.29 44.83 0.15 6.57 16 14 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 15 C 0.15 5.90 2.72 45.87 0.12 6.03 16 16 H 0.05 2.34 7.10 -2.39 -0.02 2.33 16 17 C -0.13 -5.02 6.45 31.31 0.20 -4.82 16 18 C 0.19 9.76 5.39 86.66 0.47 10.22 16 19 N -0.62 -32.22 2.94 -671.86 -1.97 -34.19 16 20 C -0.24 -13.43 10.27 84.04 0.86 -12.57 16 21 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 22 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 23 N -0.95 -58.18 10.29 21.65 0.22 -57.96 16 24 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 28 C 0.50 14.89 7.40 84.82 0.63 15.52 16 29 O -0.61 -23.51 16.64 -5.51 -0.09 -23.60 16 30 C -0.29 -7.09 9.65 22.40 0.22 -6.88 16 31 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 33 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.20 0.92 8.03 -2.91 -0.02 0.89 16 36 H 0.13 2.35 6.56 -2.38 -0.02 2.34 16 37 H 0.18 0.95 7.90 -2.38 -0.02 0.93 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.12 1.15 5.81 -2.39 -0.01 1.14 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.06 1.96 8.02 -2.39 -0.02 1.95 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.08 2.83 8.14 -2.39 -0.02 2.82 16 46 H 0.01 0.47 7.25 -2.39 -0.02 0.45 16 47 H 0.01 0.78 7.60 -2.39 -0.02 0.76 16 48 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -90.72 389.00 4.16 -86.56 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.94 Total: 10.05 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 6.68 Total: 23.27 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -5.35 Total: -122.20 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -0.14 Total: -46.41 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -90.72 4.16 -86.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049761235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.706 kcal (2) G-P(sol) polarization free energy of solvation -90.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds