Wall clock time and date at job start Wed Apr 1 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40198 * 120.36461 * 2 1 4 4 C 1.35352 * 119.94652 * 179.76703 * 3 2 1 5 5 N 1.35769 * 120.69816 * 0.51848 * 4 3 2 6 6 C 1.46506 * 119.61966 * 179.76083 * 5 4 3 7 7 C 1.50702 * 109.46914 * 269.71967 * 6 5 4 8 8 O 1.21284 * 119.99975 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00065 * 180.02562 * 7 6 5 10 10 C 1.47856 * 122.22663 * 359.97438 * 9 7 6 11 11 C 1.52713 * 111.06097 * 127.54222 * 10 9 7 12 12 C 1.53871 * 111.52360 * 48.53067 * 11 10 9 13 13 C 1.51073 * 107.33660 * 303.07028 * 12 11 10 14 14 H 1.08999 * 108.74138 * 309.16730 * 13 12 11 15 15 C 1.45726 * 122.23000 * 180.02562 * 9 7 6 16 16 H 1.09007 * 111.06978 * 119.45138 * 15 9 7 17 17 C 1.53433 * 116.37002 * 350.07554 * 15 9 7 18 18 C 1.55405 * 101.57242 * 207.06227 * 17 15 9 19 19 N 1.45024 * 119.19219 * 183.90032 * 13 12 11 20 20 C 1.36938 * 126.56234 * 28.78707 * 19 13 12 21 21 H 1.08001 * 119.99441 * 352.29626 * 20 19 13 22 22 C 1.38805 * 120.00103 * 172.29492 * 20 19 13 23 23 N 1.31616 * 120.00484 * 351.81008 * 22 20 19 24 24 Si 1.86804 * 119.99984 * 171.80939 * 22 20 19 25 25 H 1.48502 * 109.47376 * 274.41178 * 24 22 20 26 26 H 1.48505 * 109.46782 * 34.40859 * 24 22 20 27 27 H 1.48495 * 109.47455 * 154.40551 * 24 22 20 28 28 C 1.34655 * 120.75454 * 359.47947 * 5 4 3 29 29 O 1.22056 * 119.99072 * 180.27953 * 28 5 4 30 30 C 1.36393 * 120.36704 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47143 * 269.97624 * 1 2 3 32 32 H 1.09008 * 109.46984 * 29.97711 * 1 2 3 33 33 H 1.09002 * 109.47275 * 149.97480 * 1 2 3 34 34 H 1.07994 * 120.03178 * 0.05118 * 3 2 1 35 35 H 1.07993 * 119.65505 * 180.27276 * 4 3 2 36 36 H 1.08998 * 109.46581 * 149.72705 * 6 5 4 37 37 H 1.08995 * 109.47110 * 29.72382 * 6 5 4 38 38 H 1.08997 * 109.16001 * 7.13944 * 10 9 7 39 39 H 1.08992 * 109.11762 * 247.92237 * 10 9 7 40 40 H 1.09001 * 109.07371 * 288.00002 * 11 10 9 41 41 H 1.09004 * 109.06962 * 169.05820 * 11 10 9 42 42 H 1.09004 * 109.87741 * 183.61764 * 12 11 10 43 43 H 1.08997 * 109.94439 * 62.56994 * 12 11 10 44 44 H 1.08999 * 110.98224 * 325.38458 * 17 15 9 45 45 H 1.08999 * 110.98270 * 89.14957 * 17 15 9 46 46 H 1.09001 * 110.06684 * 263.51948 * 18 17 15 47 47 H 1.09007 * 109.82805 * 142.30035 * 18 17 15 48 48 H 0.96996 * 120.00289 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.35166 * 359.95037 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1998 0.0048 5 7 4.2538 0.0274 -0.0010 6 6 5.7187 0.0443 -0.0009 7 6 6.2210 0.0501 -1.4218 8 8 5.4329 0.0414 -2.3436 9 7 7.5460 0.0649 -1.6681 10 6 8.5497 0.0764 -0.5825 11 6 9.5725 -1.0422 -0.7687 12 6 10.1226 -1.0707 -2.2055 13 6 8.9423 -1.2209 -3.1365 14 1 8.3339 -2.0596 -2.7981 15 6 8.0848 0.0716 -3.0221 16 1 8.6845 0.9641 -3.2007 17 6 7.0813 -0.1758 -4.1561 18 6 7.9949 -0.7917 -5.2520 19 7 9.1782 -1.3622 -4.5604 20 6 10.2839 -1.9106 -5.1537 21 1 11.1420 -2.1769 -4.5544 22 6 10.3017 -2.1242 -6.5251 23 7 9.2050 -1.9526 -7.2322 24 14 11.8823 -2.6553 -7.3672 25 1 12.6932 -1.4564 -7.6995 26 1 12.6550 -3.5389 -6.4574 27 1 11.5554 -3.3930 -8.6138 28 6 3.6017 -1.1508 -0.0010 29 8 4.2312 -2.1965 -0.0011 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6822 2.1486 0.0008 35 1 4.1103 2.1344 0.0092 36 1 6.0922 -0.8415 0.5128 37 1 6.0717 0.9383 0.5129 38 1 8.0439 -0.0569 0.3738 39 1 9.0655 1.0366 -0.5834 40 1 9.0979 -1.9988 -0.5500 41 1 10.3984 -0.8889 -0.0741 42 1 10.8000 -1.9161 -2.3263 43 1 10.6486 -0.1407 -2.4207 44 1 6.3077 -0.8784 -3.8464 45 1 6.6409 0.7606 -4.4987 46 1 8.3098 -0.0195 -5.9538 47 1 7.4582 -1.5793 -5.7811 48 1 9.2175 -2.1015 -8.1906 49 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049761237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:27 Heat of formation + Delta-G solvation = 8.519758 kcal Electronic energy + Delta-G solvation = -31414.061747 eV Core-core repulsion = 27342.895890 eV Total energy + Delta-G solvation = -4071.165857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -41.62025 -40.19592 -37.83172 -37.09542 -35.50169 -35.33810 -32.67110 -32.27149 -30.70896 -29.68553 -28.88952 -28.30028 -27.05730 -24.53692 -24.26939 -23.84869 -21.88734 -21.55033 -20.88557 -19.76579 -19.09172 -17.66677 -17.57053 -17.06465 -16.38356 -16.15186 -15.60036 -15.28847 -15.20728 -14.75671 -14.40053 -14.30459 -14.20044 -14.06482 -13.72572 -13.63953 -13.43005 -13.13311 -12.86811 -12.53013 -12.48626 -12.31900 -12.14911 -11.96801 -11.81695 -11.78944 -11.57722 -11.11044 -10.87989 -10.73955 -10.60023 -10.50811 -10.12347 -10.08456 -9.99371 -9.96693 -9.85277 -9.57684 -9.10384 -8.57290 -8.29358 -8.06897 -6.78873 -5.68580 -3.03515 0.68860 1.77488 2.33945 2.62737 3.08466 3.41741 3.46269 3.48756 3.57751 4.29855 4.33629 4.41121 4.50878 4.54579 4.72477 4.81886 4.89562 5.02434 5.04429 5.17078 5.20341 5.26781 5.33723 5.35543 5.40115 5.54456 5.57963 5.60508 5.74172 5.78520 5.84454 5.91540 5.96229 6.05587 6.21141 6.21423 6.28301 6.37228 6.38155 6.53089 6.70163 6.74441 6.89034 6.95197 7.16627 7.52596 7.56207 7.71940 7.83995 7.98615 8.24651 8.27826 9.19945 9.85037 10.53928 11.43728 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002776 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.301312 B =10083.369076 C =10824.724014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 C -0.231 4.231 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.070 3.930 7 C 0.504 3.496 8 O -0.517 6.517 9 N -0.596 5.596 10 C 0.109 3.891 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.158 3.842 14 H 0.018 0.982 15 C 0.116 3.884 16 H 0.081 0.919 17 C -0.128 4.128 18 C 0.171 3.829 19 N -0.590 5.590 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.282 1.282 27 H -0.291 1.291 28 C 0.521 3.479 29 O -0.548 6.548 30 C -0.246 4.246 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.253 0.747 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 10.912 20.650 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.255 4.255 4 C 0.019 3.981 5 N -0.191 5.191 6 C -0.055 4.055 7 C 0.289 3.711 8 O -0.393 6.393 9 N -0.330 5.330 10 C -0.013 4.013 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.048 3.952 14 H 0.036 0.964 15 C 0.012 3.988 16 H 0.099 0.901 17 C -0.166 4.166 18 C 0.046 3.954 19 N -0.315 5.315 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.563 5.563 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.324 3.676 29 O -0.430 6.430 30 C -0.268 4.268 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.443 10.122 19.914 25.099 hybrid contribution 0.967 -0.160 -0.555 1.127 sum -10.476 9.962 19.359 24.161 Atomic orbital electron populations 1.20918 0.90445 1.03598 1.02901 1.20181 0.96704 0.92679 0.89474 1.20484 0.92326 0.98848 1.13793 1.21856 0.93591 0.89461 0.93188 1.45062 1.07226 1.07276 1.59577 1.21882 0.79622 1.06757 0.97282 1.20457 0.82419 0.77472 0.90721 1.90760 1.54755 1.48816 1.44961 1.47983 1.04388 1.72447 1.08141 1.21759 0.90457 0.99830 0.89281 1.21905 0.98031 0.98709 0.98324 1.21415 0.98773 1.02378 0.92805 1.20762 0.93617 0.93801 0.87011 0.96429 1.22469 0.96462 0.99486 0.80375 0.90120 1.22928 0.97439 1.01362 0.94880 1.21719 0.86006 0.96413 0.91246 1.44053 1.19286 1.69695 0.98473 1.18955 0.91723 1.34293 0.90719 0.90412 1.24819 0.97262 1.01593 0.96650 1.69957 1.25347 1.54763 1.06218 0.86177 0.82685 0.78031 0.79107 1.21613 1.20731 1.21736 1.17088 0.89351 0.82462 0.78730 1.90976 1.69095 1.30229 1.52684 1.21919 0.92269 0.99551 1.13043 0.90242 0.90797 0.90819 0.83839 0.82322 0.85512 0.86470 0.90605 0.91135 0.91577 0.90726 0.91311 0.91783 0.89872 0.92237 0.94503 0.92594 0.93701 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.03 36.01 0.36 -0.39 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.88 9.71 -39.87 -0.39 -2.26 16 4 C 0.15 1.28 10.28 -16.84 -0.17 1.11 16 5 N -0.48 -5.83 2.07 -121.06 -0.25 -6.09 16 6 C 0.07 0.77 4.23 -5.19 -0.02 0.75 16 7 C 0.50 7.78 7.76 -10.99 -0.09 7.69 16 8 O -0.52 -10.11 13.26 5.55 0.07 -10.04 16 9 N -0.60 -8.94 2.91 -163.97 -0.48 -9.41 16 10 C 0.11 1.17 6.32 -3.44 -0.02 1.15 16 11 C -0.13 -1.61 5.92 -26.42 -0.16 -1.76 16 12 C -0.12 -1.95 5.42 -27.25 -0.15 -2.09 16 13 C 0.16 3.34 2.58 -68.34 -0.18 3.17 16 14 H 0.02 0.43 8.04 -51.93 -0.42 0.02 16 15 C 0.12 2.18 3.33 -66.78 -0.22 1.96 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.13 -2.77 5.01 -25.23 -0.13 -2.90 16 18 C 0.17 4.40 5.47 -1.69 -0.01 4.39 16 19 N -0.59 -15.40 3.35 -163.24 -0.55 -15.95 16 20 C -0.23 -6.40 9.94 -15.06 -0.15 -6.55 16 21 H 0.08 2.08 7.29 -52.49 -0.38 1.70 16 22 C -0.01 -0.18 5.45 -17.43 -0.09 -0.28 16 23 N -0.92 -27.67 10.70 55.49 0.59 -27.08 16 24 Si 0.91 22.37 29.56 -169.99 -5.03 17.34 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C 0.52 7.96 7.40 -15.44 -0.11 7.85 16 29 O -0.55 -10.57 16.64 4.87 0.08 -10.49 16 30 C -0.25 -3.06 9.65 -39.38 -0.38 -3.44 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.10 -51.92 -0.42 -0.05 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.16 0.83 8.03 -52.49 -0.42 0.41 16 36 H 0.13 1.42 7.00 -51.93 -0.36 1.06 16 37 H 0.12 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.08 0.57 6.18 -51.93 -0.32 0.25 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 43 H 0.06 1.06 8.12 -51.93 -0.42 0.63 16 44 H 0.08 1.97 6.21 -51.93 -0.32 1.65 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 1.01 7.87 -51.93 -0.41 0.60 16 47 H 0.06 1.62 7.27 -51.93 -0.38 1.24 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -37.88 385.29 -9.87 -47.75 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.60 Total: 0.26 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -2.52 Total: 7.90 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.68 Total: -58.53 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.15 Total: -20.53 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.88 -9.87 -47.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049761237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.270 kcal (2) G-P(sol) polarization free energy of solvation -37.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds