Wall clock time and date at job start Wed Apr 1 2020 03:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38004 * 120.82574 * 2 1 4 4 C 1.39122 * 119.26822 * 180.25197 * 3 2 1 5 5 O 1.35498 * 119.52212 * 179.73459 * 4 3 2 6 6 N 1.32433 * 120.94947 * 359.76416 * 4 3 2 7 7 C 1.31637 * 121.79814 * 359.97125 * 6 4 3 8 8 C 1.50709 * 119.68482 * 180.02562 * 7 6 4 9 9 C 1.39566 * 120.63022 * 0.02562 * 7 6 4 10 10 C 1.47617 * 120.50040 * 179.97438 * 9 7 6 11 11 O 1.21583 * 119.99891 * 90.00341 * 10 9 7 12 12 N 1.34777 * 120.00105 * 269.72866 * 10 9 7 13 13 C 1.47849 * 122.22670 * 0.27021 * 12 10 9 14 14 C 1.52723 * 111.05588 * 127.51455 * 13 12 10 15 15 C 1.53872 * 111.52061 * 48.53720 * 14 13 12 16 16 C 1.51082 * 107.34659 * 303.07352 * 15 14 13 17 17 H 1.08998 * 108.73100 * 309.15127 * 16 15 14 18 18 C 1.45719 * 122.22698 * 179.97438 * 12 10 9 19 19 H 1.08998 * 111.07376 * 119.46804 * 18 12 10 20 20 C 1.53336 * 116.43336 * 350.62048 * 18 12 10 21 21 C 1.55469 * 101.58846 * 206.93508 * 20 18 12 22 22 N 1.45020 * 119.19306 * 183.88742 * 16 15 14 23 23 C 1.36940 * 126.56567 * 28.81004 * 22 16 15 24 24 H 1.07999 * 119.99924 * 359.97438 * 23 22 16 25 25 C 1.38814 * 119.99662 * 180.02562 * 23 22 16 26 26 N 1.31613 * 120.00270 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99472 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47007 * 89.99878 * 27 25 23 29 29 H 1.48492 * 109.47134 * 209.99640 * 27 25 23 30 30 H 1.48497 * 109.47108 * 329.99910 * 27 25 23 31 31 H 1.09002 * 109.47226 * 270.25616 * 1 2 3 32 32 H 1.08998 * 109.47148 * 30.25269 * 1 2 3 33 33 H 1.08999 * 109.47074 * 150.25554 * 1 2 3 34 34 H 1.08000 * 120.36393 * 359.97438 * 3 2 1 35 35 H 0.96698 * 114.00100 * 270.02096 * 5 4 3 36 36 H 1.09005 * 109.46566 * 269.97804 * 8 7 6 37 37 H 1.08998 * 109.47218 * 29.97649 * 8 7 6 38 38 H 1.08995 * 109.46803 * 149.98081 * 8 7 6 39 39 H 1.08997 * 109.16461 * 247.91948 * 13 12 10 40 40 H 1.09005 * 109.16218 * 7.11215 * 13 12 10 41 41 H 1.08994 * 109.06962 * 169.06431 * 14 13 12 42 42 H 1.09001 * 109.06581 * 288.08548 * 14 13 12 43 43 H 1.09004 * 109.87983 * 62.53349 * 15 14 13 44 44 H 1.08992 * 109.88407 * 183.60880 * 15 14 13 45 45 H 1.09007 * 111.21375 * 88.78921 * 20 18 12 46 46 H 1.09006 * 110.87763 * 324.93896 * 20 18 12 47 47 H 1.08992 * 109.96337 * 263.00818 * 21 20 18 48 48 H 1.09000 * 109.96259 * 141.76258 * 21 20 18 49 49 H 0.97008 * 119.99786 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0053 5 8 4.3043 2.3077 -0.0108 6 7 4.2548 -0.0066 -0.0057 7 6 3.6204 -1.1600 -0.0005 8 6 4.4080 -2.4449 -0.0007 9 6 2.2255 -1.2044 0.0050 10 6 1.5171 -2.4994 0.0103 11 8 1.2294 -3.0307 1.0654 12 7 1.1842 -3.0902 -1.1545 13 6 1.5094 -2.4881 -2.4651 14 6 2.2459 -3.4838 -3.3587 15 6 1.5325 -4.8467 -3.3928 16 6 1.4264 -5.3353 -1.9671 17 1 2.4110 -5.2778 -1.5032 18 6 0.4854 -4.3679 -1.2059 19 1 -0.4743 -4.2695 -1.7131 20 6 0.3405 -5.1205 0.1221 21 6 0.2461 -6.5946 -0.3630 22 7 0.8667 -6.6481 -1.7091 23 6 0.9053 -7.7305 -2.5471 24 1 1.3892 -7.6514 -3.5094 25 6 0.3216 -8.9290 -2.1600 26 7 -0.2685 -9.0252 -0.9875 27 14 0.3737 -10.4053 -3.3034 28 1 1.5981 -11.1999 -3.0303 29 1 -0.8258 -11.2503 -3.0757 30 1 0.3904 -9.9391 -4.7132 31 1 -0.3634 0.0046 1.0277 32 1 -0.3633 0.8877 -0.5177 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6936 2.1314 -0.0004 35 1 4.5036 2.6427 -0.8958 36 1 4.5935 -2.7572 -1.0284 37 1 5.3589 -2.2883 0.5087 38 1 3.8413 -3.2184 0.5175 39 1 0.5863 -2.1810 -2.9567 40 1 2.1396 -1.6123 -2.3100 41 1 2.2973 -3.0833 -4.3711 42 1 3.2581 -3.6222 -2.9788 43 1 0.5365 -4.7332 -3.8209 44 1 2.1129 -5.5542 -3.9849 45 1 -0.5676 -4.8234 0.6468 46 1 1.2185 -4.9719 0.7507 47 1 -0.7983 -6.9004 -0.4230 48 1 0.7865 -7.2473 0.3225 49 1 -0.6760 -9.8629 -0.7169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049912690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:27 Heat of formation + Delta-G solvation = -2.630581 kcal Electronic energy + Delta-G solvation = -32075.814545 eV Core-core repulsion = 28004.165173 eV Total energy + Delta-G solvation = -4071.649372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -41.29626 -40.02742 -38.07949 -37.17709 -35.46685 -34.54842 -32.67852 -32.45189 -31.69488 -29.09037 -28.35182 -28.28483 -27.80551 -24.99188 -24.49686 -23.36268 -21.57833 -21.54760 -21.03474 -19.85209 -19.26215 -18.65994 -17.43506 -17.08994 -16.51844 -16.05587 -15.69901 -15.04285 -14.81554 -14.65620 -14.34712 -14.10904 -14.04169 -13.82558 -13.57055 -13.45025 -13.39425 -13.19102 -12.78476 -12.52013 -12.44512 -12.36531 -12.23878 -12.10307 -11.87749 -11.87044 -11.61231 -11.16021 -10.87934 -10.74341 -10.61609 -10.51903 -10.12297 -10.05305 -9.90966 -9.84593 -9.78711 -9.63569 -9.15572 -8.95369 -8.60227 -8.32139 -6.84683 -5.71314 -3.05787 0.53135 0.86464 2.60120 2.92561 3.19839 3.38000 3.39479 3.44234 3.46382 4.18776 4.23458 4.37390 4.48145 4.74428 4.78159 4.89723 5.02271 5.03959 5.22026 5.24453 5.28188 5.30665 5.33289 5.39786 5.47071 5.54970 5.60290 5.63543 5.71590 5.74684 5.82516 5.88496 5.90784 5.97194 6.04885 6.16632 6.22383 6.24946 6.35051 6.51177 6.67873 6.73046 6.85654 7.12430 7.13283 7.52484 7.58149 7.62429 7.65497 7.82662 8.23072 8.26772 9.18043 9.81921 10.49592 11.40586 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.002984 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.185708 B = 9382.616512 C = 9676.852337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.009 3.991 3 C -0.197 4.197 4 C 0.326 3.674 5 O -0.481 6.481 6 N -0.506 5.506 7 C 0.194 3.806 8 C -0.114 4.114 9 C -0.181 4.181 10 C 0.573 3.427 11 O -0.518 6.518 12 N -0.589 5.589 13 C 0.112 3.888 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.160 3.840 17 H 0.017 0.983 18 C 0.115 3.885 19 H 0.081 0.919 20 C -0.131 4.131 21 C 0.172 3.828 22 N -0.591 5.591 23 C -0.227 4.227 24 H 0.079 0.921 25 C -0.006 4.006 26 N -0.919 5.919 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.401 0.599 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 22.027 -2.930 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.001 3.999 3 C -0.218 4.218 4 C 0.148 3.852 5 O -0.288 6.288 6 N -0.226 5.226 7 C 0.056 3.944 8 C -0.171 4.171 9 C -0.187 4.187 10 C 0.359 3.641 11 O -0.394 6.394 12 N -0.322 5.322 13 C -0.010 4.010 14 C -0.168 4.168 15 C -0.154 4.154 16 C 0.050 3.950 17 H 0.035 0.965 18 C 0.011 3.989 19 H 0.099 0.901 20 C -0.169 4.169 21 C 0.048 3.952 22 N -0.316 5.316 23 C -0.355 4.355 24 H 0.096 0.904 25 C -0.203 4.203 26 N -0.566 5.566 27 Si 0.740 3.260 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.259 0.741 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.798 21.521 -1.748 22.118 hybrid contribution -0.718 -0.526 -1.107 1.420 sum 4.080 20.995 -2.855 21.577 Atomic orbital electron populations 1.20927 0.89305 1.03812 1.03886 1.20205 0.96978 0.90823 0.91931 1.21844 0.93700 0.99255 1.06982 1.19227 0.87003 0.85029 0.93954 1.84737 1.76066 1.34117 1.33926 1.66994 1.41851 0.97806 1.15948 1.21071 0.89214 0.93099 0.91028 1.20898 1.00581 0.91685 1.03945 1.20817 0.94900 0.94721 1.08239 1.17803 0.78814 0.83650 0.83859 1.90842 1.54096 1.63829 1.30672 1.48018 1.56699 1.22454 1.05017 1.21676 1.00027 0.95880 0.83448 1.21906 0.99785 0.96027 0.99052 1.21426 1.00590 0.94723 0.98633 1.20639 0.94835 0.86452 0.93036 0.96527 1.22366 0.95600 0.80968 0.99955 0.90112 1.22966 1.02545 0.96622 0.94777 1.21735 0.98646 0.89535 0.85306 1.44059 1.65540 1.05697 1.16321 1.18976 1.30969 0.88071 0.97515 0.90353 1.24801 1.00443 0.97868 0.97172 1.69944 1.41550 1.25403 1.19711 0.86157 0.77121 0.82847 0.79841 1.21636 1.21711 1.20724 0.89544 0.90324 0.90508 0.83742 0.74061 0.89493 0.89659 0.89767 0.91377 0.90918 0.90854 0.91771 0.91714 0.91334 0.91987 0.90013 0.92522 0.94231 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.69 36.00 0.35 -0.75 16 2 C 0.01 0.09 5.95 -103.96 -0.62 -0.53 16 3 C -0.20 -1.86 9.73 -39.34 -0.38 -2.24 16 4 C 0.33 3.54 7.74 -16.96 -0.13 3.41 16 5 O -0.48 -4.24 13.55 -18.19 -0.25 -4.48 16 6 N -0.51 -6.49 10.28 -9.20 -0.09 -6.58 16 7 C 0.19 2.52 6.74 -82.18 -0.55 1.97 16 8 C -0.11 -1.38 9.78 36.01 0.35 -1.03 16 9 C -0.18 -2.37 3.79 -104.82 -0.40 -2.76 16 10 C 0.57 8.81 4.20 -12.43 -0.05 8.75 16 11 O -0.52 -9.79 13.93 5.29 0.07 -9.72 16 12 N -0.59 -8.63 2.92 -165.58 -0.48 -9.11 16 13 C 0.11 1.28 6.31 -3.44 -0.02 1.26 16 14 C -0.13 -1.53 5.92 -26.42 -0.16 -1.69 16 15 C -0.12 -1.85 5.45 -27.24 -0.15 -2.00 16 16 C 0.16 3.16 2.57 -68.66 -0.18 2.98 16 17 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 18 C 0.12 2.06 3.28 -67.15 -0.22 1.84 16 19 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 20 C -0.13 -2.67 5.02 -25.24 -0.13 -2.79 16 21 C 0.17 4.23 5.47 -1.73 -0.01 4.22 16 22 N -0.59 -14.67 3.35 -163.68 -0.55 -15.22 16 23 C -0.23 -6.11 9.94 -15.06 -0.15 -6.26 16 24 H 0.08 2.02 7.31 -52.49 -0.38 1.63 16 25 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 26 N -0.92 -26.80 10.46 55.49 0.58 -26.22 16 27 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.08 0.78 7.18 -51.93 -0.37 0.41 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.40 1.38 9.06 45.56 0.41 1.79 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.17 7.06 -51.93 -0.37 0.80 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 44 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.75 6.21 -51.93 -0.32 1.43 16 47 H 0.06 1.52 7.18 -51.93 -0.37 1.15 16 48 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -33.53 384.14 -9.24 -42.76 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.75 Total: 1.91 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.54 Total: 4.12 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.55 Total: -57.13 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.17 Total: -14.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.53 -9.24 -42.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049912690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.132 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds