Wall clock time and date at job start Wed Apr 1 2020 03:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38004 * 120.82574 * 2 1 4 4 C 1.39122 * 119.26822 * 180.25197 * 3 2 1 5 5 O 1.35498 * 119.52212 * 179.73459 * 4 3 2 6 6 N 1.32433 * 120.94947 * 359.76416 * 4 3 2 7 7 C 1.31637 * 121.79814 * 359.97125 * 6 4 3 8 8 C 1.50709 * 119.68482 * 180.02562 * 7 6 4 9 9 C 1.39566 * 120.63022 * 0.02562 * 7 6 4 10 10 C 1.47617 * 120.50040 * 179.97438 * 9 7 6 11 11 O 1.21583 * 119.99891 * 90.00341 * 10 9 7 12 12 N 1.34777 * 120.00105 * 269.72866 * 10 9 7 13 13 C 1.47849 * 122.22670 * 0.27021 * 12 10 9 14 14 C 1.52723 * 111.05588 * 127.51455 * 13 12 10 15 15 C 1.53872 * 111.52061 * 48.53720 * 14 13 12 16 16 C 1.51082 * 107.34659 * 303.07352 * 15 14 13 17 17 H 1.08998 * 108.73100 * 309.15127 * 16 15 14 18 18 C 1.45719 * 122.22698 * 179.97438 * 12 10 9 19 19 H 1.08998 * 111.07376 * 119.46804 * 18 12 10 20 20 C 1.53336 * 116.43336 * 350.62048 * 18 12 10 21 21 C 1.55469 * 101.58846 * 206.93508 * 20 18 12 22 22 N 1.45020 * 119.19306 * 183.88742 * 16 15 14 23 23 C 1.36940 * 126.56567 * 28.81004 * 22 16 15 24 24 H 1.07999 * 119.99924 * 359.97438 * 23 22 16 25 25 C 1.38814 * 119.99662 * 180.02562 * 23 22 16 26 26 N 1.31613 * 120.00270 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99472 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47007 * 89.99878 * 27 25 23 29 29 H 1.48492 * 109.47134 * 209.99640 * 27 25 23 30 30 H 1.48497 * 109.47108 * 329.99910 * 27 25 23 31 31 H 1.09002 * 109.47226 * 270.25616 * 1 2 3 32 32 H 1.08998 * 109.47148 * 30.25269 * 1 2 3 33 33 H 1.08999 * 109.47074 * 150.25554 * 1 2 3 34 34 H 1.08000 * 120.36393 * 359.97438 * 3 2 1 35 35 H 0.96698 * 114.00100 * 270.02096 * 5 4 3 36 36 H 1.09005 * 109.46566 * 269.97804 * 8 7 6 37 37 H 1.08998 * 109.47218 * 29.97649 * 8 7 6 38 38 H 1.08995 * 109.46803 * 149.98081 * 8 7 6 39 39 H 1.08997 * 109.16461 * 247.91948 * 13 12 10 40 40 H 1.09005 * 109.16218 * 7.11215 * 13 12 10 41 41 H 1.08994 * 109.06962 * 169.06431 * 14 13 12 42 42 H 1.09001 * 109.06581 * 288.08548 * 14 13 12 43 43 H 1.09004 * 109.87983 * 62.53349 * 15 14 13 44 44 H 1.08992 * 109.88407 * 183.60880 * 15 14 13 45 45 H 1.09007 * 111.21375 * 88.78921 * 20 18 12 46 46 H 1.09006 * 110.87763 * 324.93896 * 20 18 12 47 47 H 1.08992 * 109.96337 * 263.00818 * 21 20 18 48 48 H 1.09000 * 109.96259 * 141.76258 * 21 20 18 49 49 H 0.97008 * 119.99786 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0053 5 8 4.3043 2.3077 -0.0108 6 7 4.2548 -0.0066 -0.0057 7 6 3.6204 -1.1600 -0.0005 8 6 4.4080 -2.4449 -0.0007 9 6 2.2255 -1.2044 0.0050 10 6 1.5171 -2.4994 0.0103 11 8 1.2294 -3.0307 1.0654 12 7 1.1842 -3.0902 -1.1545 13 6 1.5094 -2.4881 -2.4651 14 6 2.2459 -3.4838 -3.3587 15 6 1.5325 -4.8467 -3.3928 16 6 1.4264 -5.3353 -1.9671 17 1 2.4110 -5.2778 -1.5032 18 6 0.4854 -4.3679 -1.2059 19 1 -0.4743 -4.2695 -1.7131 20 6 0.3405 -5.1205 0.1221 21 6 0.2461 -6.5946 -0.3630 22 7 0.8667 -6.6481 -1.7091 23 6 0.9053 -7.7305 -2.5471 24 1 1.3892 -7.6514 -3.5094 25 6 0.3216 -8.9290 -2.1600 26 7 -0.2685 -9.0252 -0.9875 27 14 0.3737 -10.4053 -3.3034 28 1 1.5981 -11.1999 -3.0303 29 1 -0.8258 -11.2503 -3.0757 30 1 0.3904 -9.9391 -4.7132 31 1 -0.3634 0.0046 1.0277 32 1 -0.3633 0.8877 -0.5177 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6936 2.1314 -0.0004 35 1 4.5036 2.6427 -0.8958 36 1 4.5935 -2.7572 -1.0284 37 1 5.3589 -2.2883 0.5087 38 1 3.8413 -3.2184 0.5175 39 1 0.5863 -2.1810 -2.9567 40 1 2.1396 -1.6123 -2.3100 41 1 2.2973 -3.0833 -4.3711 42 1 3.2581 -3.6222 -2.9788 43 1 0.5365 -4.7332 -3.8209 44 1 2.1129 -5.5542 -3.9849 45 1 -0.5676 -4.8234 0.6468 46 1 1.2185 -4.9719 0.7507 47 1 -0.7983 -6.9004 -0.4230 48 1 0.7865 -7.2473 0.3225 49 1 -0.6760 -9.8629 -0.7169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049912690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:23 Heat of formation + Delta-G solvation = -27.483560 kcal Electronic energy + Delta-G solvation = -32076.892251 eV Core-core repulsion = 28004.165173 eV Total energy + Delta-G solvation = -4072.727078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.32264 -41.18850 -39.34147 -38.08593 -36.94872 -35.37762 -34.29960 -33.89374 -32.82066 -30.83703 -29.75021 -29.07063 -28.83254 -26.46380 -26.14900 -24.41181 -22.86626 -22.56103 -22.36501 -21.52443 -20.51181 -19.41936 -18.70371 -18.26668 -17.83169 -17.30761 -16.88682 -16.62705 -16.18717 -15.96364 -15.60961 -15.44002 -15.10327 -14.97459 -14.78126 -14.44189 -14.32435 -14.26182 -14.15303 -13.85822 -13.73766 -13.41332 -13.38299 -13.16324 -13.10030 -12.94730 -12.87071 -12.72575 -12.60946 -12.25917 -12.12180 -11.99801 -11.79113 -11.70137 -11.58320 -11.45317 -10.89350 -10.71896 -10.61067 -10.34499 -9.86079 -9.62559 -8.89902 -7.82814 -5.19527 -0.31419 0.04784 1.42344 1.47125 1.49142 1.57509 1.82874 2.35616 2.51487 2.56555 3.22687 3.36084 3.37462 3.45565 3.52600 3.87308 3.96403 3.98631 4.01818 4.05723 4.20387 4.24896 4.29367 4.31540 4.38833 4.53032 4.54093 4.56465 4.59101 4.63162 4.64352 4.75021 4.83187 4.89559 4.96864 5.00424 5.08418 5.09561 5.14147 5.14959 5.29145 5.41134 5.41579 5.50288 5.60035 5.60862 5.73399 6.19140 6.37875 6.58099 6.81814 7.05467 7.07047 7.77110 8.46662 9.28901 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.002984 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.185708 B = 9382.616512 C = 9676.852337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.011 3.989 3 C -0.183 4.183 4 C 0.328 3.672 5 O -0.486 6.486 6 N -0.527 5.527 7 C 0.187 3.813 8 C -0.111 4.111 9 C -0.198 4.198 10 C 0.578 3.422 11 O -0.563 6.563 12 N -0.586 5.586 13 C 0.109 3.891 14 C -0.119 4.119 15 C -0.110 4.110 16 C 0.154 3.846 17 H 0.001 0.999 18 C 0.132 3.868 19 H 0.086 0.914 20 C -0.114 4.114 21 C 0.183 3.817 22 N -0.610 5.610 23 C -0.231 4.231 24 H 0.090 0.910 25 C -0.069 4.069 26 N -0.955 5.955 27 Si 0.977 3.023 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.263 1.263 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.179 0.821 35 H 0.425 0.575 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.027 0.973 48 H -0.002 1.002 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 25.745 -5.428 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 C -0.203 4.203 4 C 0.150 3.850 5 O -0.297 6.297 6 N -0.248 5.248 7 C 0.049 3.951 8 C -0.168 4.168 9 C -0.204 4.204 10 C 0.365 3.635 11 O -0.442 6.442 12 N -0.317 5.317 13 C -0.012 4.012 14 C -0.158 4.158 15 C -0.148 4.148 16 C 0.045 3.955 17 H 0.018 0.982 18 C 0.027 3.973 19 H 0.104 0.896 20 C -0.152 4.152 21 C 0.058 3.942 22 N -0.335 5.335 23 C -0.359 4.359 24 H 0.108 0.892 25 C -0.262 4.262 26 N -0.604 5.604 27 Si 0.806 3.194 28 H -0.217 1.217 29 H -0.224 1.224 30 H -0.187 1.187 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.197 0.803 35 H 0.287 0.713 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.016 0.984 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.278 25.310 -4.316 26.212 hybrid contribution -0.767 -1.555 -0.292 1.758 sum 4.511 23.755 -4.608 24.615 Atomic orbital electron populations 1.20984 0.88014 1.04812 1.03989 1.20441 0.97879 0.90346 0.91023 1.22110 0.93068 1.00017 1.05145 1.19486 0.87780 0.84974 0.92804 1.84695 1.75870 1.33050 1.36118 1.66990 1.42455 0.98304 1.17035 1.21003 0.89176 0.93315 0.91652 1.20836 1.00403 0.91178 1.04367 1.20600 0.94908 0.94030 1.10818 1.18149 0.77976 0.84203 0.83138 1.90813 1.55881 1.65236 1.32302 1.48026 1.56082 1.21048 1.06577 1.21964 1.01641 0.96068 0.81491 1.21880 0.98961 0.93542 1.01391 1.21392 1.01258 0.96907 0.95262 1.20826 0.93857 0.84661 0.96113 0.98189 1.21947 0.95653 0.82273 0.97382 0.89617 1.22691 1.02176 0.94317 0.96053 1.21420 0.96115 0.91484 0.85178 1.44308 1.65605 1.07524 1.16074 1.19409 1.29841 0.88765 0.97929 0.89208 1.25673 1.00925 1.00826 0.98739 1.70176 1.43003 1.25534 1.21661 0.85092 0.76403 0.79148 0.78789 1.21740 1.22406 1.18733 0.89872 0.86886 0.91893 0.80320 0.71254 0.88365 0.89106 0.92342 0.88969 0.88791 0.87066 0.91899 0.91429 0.92320 0.91564 0.91192 0.95499 0.98383 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.69 71.23 0.69 -1.12 16 2 C 0.01 0.20 5.95 -19.43 -0.12 0.09 16 3 C -0.18 -2.70 9.73 22.43 0.22 -2.48 16 4 C 0.33 6.03 7.74 84.81 0.66 6.69 16 5 O -0.49 -6.78 13.55 -87.99 -1.19 -7.97 16 6 N -0.53 -12.39 10.28 -295.89 -3.04 -15.43 16 7 C 0.19 4.60 6.74 42.91 0.29 4.89 16 8 C -0.11 -2.68 9.78 71.24 0.70 -1.98 16 9 C -0.20 -4.87 3.79 -19.99 -0.08 -4.94 16 10 C 0.58 17.57 4.20 86.72 0.36 17.94 16 11 O -0.56 -21.95 13.93 -3.98 -0.06 -22.00 16 12 N -0.59 -16.52 2.92 -796.04 -2.32 -18.85 16 13 C 0.11 2.13 6.31 86.03 0.54 2.67 16 14 C -0.12 -2.44 5.92 30.80 0.18 -2.26 16 15 C -0.11 -3.36 5.45 30.26 0.16 -3.19 16 16 C 0.15 6.15 2.57 45.31 0.12 6.26 16 17 H 0.00 0.03 8.04 -2.39 -0.02 0.01 16 18 C 0.13 4.77 3.28 45.92 0.15 4.92 16 19 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 20 C -0.11 -4.90 5.02 31.56 0.16 -4.74 16 21 C 0.18 9.64 5.47 86.88 0.48 10.11 16 22 N -0.61 -31.44 3.35 -671.77 -2.25 -33.69 16 23 C -0.23 -12.69 9.94 84.03 0.84 -11.85 16 24 H 0.09 4.62 7.31 -2.91 -0.02 4.60 16 25 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 26 N -0.95 -58.55 10.46 21.65 0.23 -58.33 16 27 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.06 1.13 7.18 -2.39 -0.02 1.11 16 34 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.43 1.23 9.06 -74.06 -0.67 0.56 16 36 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.70 7.06 -2.39 -0.02 1.69 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.53 6.44 -2.38 -0.02 1.51 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 44 H 0.06 1.91 7.70 -2.39 -0.02 1.89 16 45 H 0.07 2.75 8.14 -2.38 -0.02 2.74 16 46 H 0.07 3.20 6.21 -2.38 -0.01 3.18 16 47 H 0.03 1.55 7.18 -2.39 -0.02 1.53 16 48 H 0.00 -0.13 7.81 -2.39 -0.02 -0.14 16 49 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -77.87 384.14 -0.49 -78.36 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.30 Total: 12.65 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 5.82 Total: 17.55 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -7.39 Total: -126.29 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.25 Total: -29.97 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -77.87 -0.49 -78.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049912690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.875 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds