Wall clock time and date at job start Wed Apr 1 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40197 * 120.36683 * 2 1 4 4 C 1.35347 * 119.94794 * 179.97438 * 3 2 1 5 5 N 1.35767 * 120.70333 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62538 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46868 * 89.99924 * 6 5 4 8 8 O 1.21280 * 119.99960 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99737 * 179.97438 * 7 6 5 10 10 C 1.44498 * 116.63038 * 354.24171 * 9 7 6 11 11 C 1.51636 * 112.65178 * 154.60351 * 10 9 7 12 12 C 1.51325 * 111.98225 * 42.75355 * 11 10 9 13 13 C 1.50712 * 113.54686 * 304.61371 * 12 11 10 14 14 H 1.08996 * 109.33192 * 169.06641 * 13 12 11 15 15 C 1.54182 * 110.50682 * 289.39176 * 13 12 11 16 16 N 1.46931 * 106.26198 * 151.09497 * 15 13 12 17 17 C 1.36929 * 125.37531 * 162.10944 * 16 15 13 18 18 H 1.08002 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00112 * 180.02562 * 17 16 15 20 20 N 1.31614 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47194 * 119.99924 * 21 19 17 24 24 H 1.48501 * 109.46826 * 240.00054 * 21 19 17 25 25 C 1.46818 * 109.24780 * 342.15174 * 16 15 13 26 26 C 1.44104 * 116.62480 * 173.98174 * 9 7 6 27 27 H 1.09001 * 109.10394 * 73.87290 * 26 9 7 28 28 C 1.34660 * 120.74978 * 0.25030 * 5 4 3 29 29 O 1.22063 * 119.98775 * 179.69927 * 28 5 4 30 30 C 1.36399 * 120.36808 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47207 * 90.00156 * 1 2 3 32 32 H 1.09001 * 109.47249 * 209.99579 * 1 2 3 33 33 H 1.08998 * 109.47453 * 330.00014 * 1 2 3 34 34 H 1.07999 * 120.02130 * 0.02562 * 3 2 1 35 35 H 1.07998 * 119.65050 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47287 * 330.00476 * 6 5 4 37 37 H 1.09000 * 109.47013 * 209.99715 * 6 5 4 38 38 H 1.09001 * 108.84700 * 275.41571 * 10 9 7 39 39 H 1.09002 * 108.85085 * 33.78101 * 10 9 7 40 40 H 1.09000 * 108.97678 * 163.40292 * 11 10 9 41 41 H 1.09009 * 108.97492 * 282.19321 * 11 10 9 42 42 H 1.09001 * 108.66751 * 65.66164 * 12 11 10 43 43 H 1.08998 * 108.66773 * 183.69470 * 12 11 10 44 44 H 1.08999 * 110.09805 * 270.29359 * 15 13 12 45 45 H 1.09000 * 110.10033 * 31.83664 * 15 13 12 46 46 H 0.97005 * 120.00129 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.84220 * 120.39752 * 25 16 15 48 48 H 1.09001 * 109.83551 * 241.30813 * 25 16 15 49 49 H 1.08006 * 120.34914 * 0.03964 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2210 0.0500 1.4214 8 8 5.4328 0.0405 2.3432 9 7 7.5460 0.0647 1.6677 10 6 8.4190 -0.0554 0.5226 11 6 9.7835 0.5614 0.7612 12 6 10.3249 0.2253 2.1337 13 6 9.3967 0.6087 3.2575 14 1 9.7553 0.1682 4.1878 15 6 9.3373 2.1418 3.4097 16 7 8.0059 2.4505 3.9492 17 6 7.6488 3.6255 4.5547 18 1 8.3740 4.4181 4.6657 19 6 6.3545 3.7981 5.0260 20 7 5.4708 2.8322 4.8912 21 14 5.8671 5.4015 5.8514 22 1 7.0346 6.3189 5.8790 23 1 4.7587 6.0327 5.0910 24 1 5.4208 5.1270 7.2409 25 6 7.1192 1.2996 3.7373 26 6 7.9453 0.2045 3.0453 27 1 7.7612 -0.7347 3.5671 28 6 3.6017 -1.1508 -0.0050 29 8 4.2312 -2.1965 -0.0105 30 6 2.1965 -1.1768 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6821 2.1486 0.0004 35 1 4.1103 2.1344 0.0009 36 1 6.0718 0.9383 -0.5132 37 1 6.0922 -0.8416 -0.5132 38 1 8.5466 -1.1118 0.2864 39 1 7.9528 0.4399 -0.3292 40 1 10.4769 0.1911 0.0061 41 1 9.7040 1.6446 0.6683 42 1 10.5080 -0.8481 2.1833 43 1 11.2719 0.7468 2.2726 44 1 10.1091 2.4798 4.1012 45 1 9.4691 2.6200 2.4391 46 1 4.5665 2.9526 5.2208 47 1 6.7484 0.9369 4.6959 48 1 6.2818 1.5898 3.1027 49 1 1.6683 -2.1189 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050152207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:52 Heat of formation + Delta-G solvation = 10.883680 kcal Electronic energy + Delta-G solvation = -32088.566571 eV Core-core repulsion = 28017.503221 eV Total energy + Delta-G solvation = -4071.063350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 13.74 seconds Orbital eigenvalues (eV) -41.45697 -40.33419 -37.74143 -36.87662 -35.52594 -35.12116 -33.26145 -32.12031 -30.56791 -29.71898 -29.26715 -27.66536 -26.33994 -25.66922 -24.02785 -23.60237 -22.25879 -21.66674 -20.77558 -19.60873 -17.92597 -17.44657 -17.41344 -17.22732 -16.58343 -15.95068 -15.86425 -15.31937 -15.02777 -14.61351 -14.43147 -14.19741 -14.09546 -13.88220 -13.72485 -13.57199 -13.31296 -13.21033 -12.73551 -12.57241 -12.42860 -12.28674 -12.12297 -11.65968 -11.63787 -11.52687 -11.38071 -11.10359 -10.99871 -10.81366 -10.68038 -10.33207 -10.25847 -10.04968 -9.98389 -9.84299 -9.75715 -9.63588 -9.07641 -8.51527 -8.04056 -7.83458 -6.73130 -5.60734 -2.97774 0.93217 2.01513 2.59828 2.94136 3.36833 3.41245 3.46627 3.49512 3.80443 4.53581 4.57090 4.60015 4.66192 4.74909 4.84257 4.89208 5.02524 5.06597 5.10118 5.19404 5.28654 5.34040 5.39654 5.44932 5.50289 5.57351 5.60902 5.68948 5.75539 5.78605 5.89552 5.95057 6.03507 6.05828 6.14994 6.19104 6.20352 6.43659 6.44146 6.57396 6.61279 6.69532 6.75489 7.07820 7.19003 7.54967 7.72988 7.80537 8.04330 8.18059 8.34765 8.58072 9.28819 9.89909 10.54599 11.47409 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009014 B = 0.004617 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.621799 B = 6063.400604 C = 8567.144450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.018 3.982 3 C -0.233 4.233 4 C 0.155 3.845 5 N -0.478 5.478 6 C 0.071 3.929 7 C 0.486 3.514 8 O -0.489 6.489 9 N -0.585 5.585 10 C 0.113 3.887 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.142 3.858 16 N -0.607 5.607 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.172 3.828 26 C 0.132 3.868 27 H 0.058 0.942 28 C 0.524 3.476 29 O -0.559 6.559 30 C -0.254 4.254 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.015 0.985 46 H 0.251 0.749 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -4.765 -15.264 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.014 3.986 3 C -0.256 4.256 4 C 0.028 3.972 5 N -0.188 5.188 6 C -0.055 4.055 7 C 0.271 3.729 8 O -0.361 6.361 9 N -0.320 5.320 10 C -0.011 4.011 11 C -0.164 4.164 12 C -0.140 4.140 13 C -0.122 4.122 14 H 0.098 0.902 15 C 0.016 3.984 16 N -0.334 5.334 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.048 3.952 26 C 0.028 3.972 27 H 0.076 0.924 28 C 0.327 3.673 29 O -0.442 6.442 30 C -0.275 4.275 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.033 0.967 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.155 -5.376 -14.626 15.583 hybrid contribution -0.157 0.992 0.593 1.167 sum -0.312 -4.384 -14.033 14.705 Atomic orbital electron populations 1.20911 0.90567 1.03581 1.02760 1.20178 0.96616 0.92723 0.89044 1.20486 0.92359 0.98857 1.13859 1.21931 0.93667 0.89574 0.92054 1.45038 1.07333 1.07247 1.59205 1.21940 0.79583 1.06400 0.97551 1.20545 0.83222 0.78391 0.90779 1.90863 1.54846 1.45666 1.44766 1.46662 1.05188 1.73054 1.07136 1.20834 0.91914 1.00398 0.87927 1.21108 0.95392 1.02044 0.97890 1.20484 0.98709 1.01048 0.93774 1.21318 0.93649 0.98635 0.98553 0.90162 1.21377 0.89607 0.91162 0.96263 1.44408 1.05747 1.14493 1.68788 1.19021 0.95283 0.91089 1.30905 0.90612 1.24841 0.96313 0.97851 1.01247 1.70030 1.03871 1.30941 1.50554 0.86132 0.78111 0.82979 0.79047 1.20615 1.21852 1.21791 1.21624 0.91399 0.83647 0.98576 1.21083 0.95393 1.00743 0.79963 0.92443 1.17037 0.89304 0.82396 0.78599 1.90919 1.69251 1.30332 1.53713 1.21844 0.92304 0.99355 1.14037 0.90327 0.90929 0.90738 0.83808 0.82109 0.86514 0.85785 0.92441 0.91296 0.90705 0.91085 0.92402 0.91449 0.94989 0.96717 0.93797 0.93015 0.90763 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.03 36.00 0.36 -0.69 16 2 C 0.02 0.22 5.89 -104.55 -0.62 -0.39 16 3 C -0.23 -2.79 9.71 -39.88 -0.39 -3.18 16 4 C 0.15 2.04 10.28 -16.84 -0.17 1.87 16 5 N -0.48 -7.32 2.07 -121.06 -0.25 -7.57 16 6 C 0.07 0.99 4.17 -5.19 -0.02 0.97 16 7 C 0.49 9.09 6.84 -10.98 -0.08 9.01 16 8 O -0.49 -11.66 13.75 5.56 0.08 -11.59 16 9 N -0.59 -10.01 3.09 -170.33 -0.53 -10.53 16 10 C 0.11 1.36 5.70 -5.80 -0.03 1.32 16 11 C -0.13 -1.41 5.83 -28.27 -0.16 -1.57 16 12 C -0.10 -1.29 5.17 -28.72 -0.15 -1.44 16 13 C -0.10 -1.75 3.05 -91.58 -0.28 -2.02 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.14 2.91 6.65 -3.19 -0.02 2.89 16 16 N -0.61 -15.75 3.39 -171.51 -0.58 -16.33 16 17 C -0.23 -6.63 10.25 -15.06 -0.15 -6.78 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 20 N -0.91 -27.58 10.26 55.49 0.57 -27.01 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 C 0.17 4.41 4.13 -3.53 -0.01 4.39 16 26 C 0.13 2.64 3.09 -69.30 -0.21 2.42 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.52 9.10 7.40 -15.44 -0.11 8.98 16 29 O -0.56 -11.39 16.64 4.86 0.08 -11.31 16 30 C -0.25 -3.71 9.65 -39.38 -0.38 -4.09 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.16 1.77 8.04 -52.49 -0.42 1.35 16 36 H 0.12 1.18 7.25 -51.93 -0.38 0.80 16 37 H 0.12 1.59 7.15 -51.93 -0.37 1.22 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.66 6.07 -51.93 -0.32 0.34 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.87 6.99 -51.92 -0.36 0.50 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.02 0.30 6.69 -51.93 -0.35 -0.04 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.05 1.54 7.36 -51.93 -0.38 1.16 16 48 H 0.07 2.10 4.71 -51.93 -0.24 1.86 16 49 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -38.10 381.22 -9.88 -47.97 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.43 Total: 1.83 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -2.53 Total: 11.44 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.79 Total: -61.45 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.16 Total: -22.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.10 -9.88 -47.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050152207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.857 kcal (2) G-P(sol) polarization free energy of solvation -38.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.75 seconds