Wall clock time and date at job start Wed Apr 1 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40197 * 120.36683 * 2 1 4 4 C 1.35347 * 119.94794 * 179.97438 * 3 2 1 5 5 N 1.35767 * 120.70333 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62538 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46868 * 89.99924 * 6 5 4 8 8 O 1.21280 * 119.99960 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99737 * 179.97438 * 7 6 5 10 10 C 1.44498 * 116.63038 * 354.24171 * 9 7 6 11 11 C 1.51636 * 112.65178 * 154.60351 * 10 9 7 12 12 C 1.51325 * 111.98225 * 42.75355 * 11 10 9 13 13 C 1.50712 * 113.54686 * 304.61371 * 12 11 10 14 14 H 1.08996 * 109.33192 * 169.06641 * 13 12 11 15 15 C 1.54182 * 110.50682 * 289.39176 * 13 12 11 16 16 N 1.46931 * 106.26198 * 151.09497 * 15 13 12 17 17 C 1.36929 * 125.37531 * 162.10944 * 16 15 13 18 18 H 1.08002 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00112 * 180.02562 * 17 16 15 20 20 N 1.31614 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47194 * 119.99924 * 21 19 17 24 24 H 1.48501 * 109.46826 * 240.00054 * 21 19 17 25 25 C 1.46818 * 109.24780 * 342.15174 * 16 15 13 26 26 C 1.44104 * 116.62480 * 173.98174 * 9 7 6 27 27 H 1.09001 * 109.10394 * 73.87290 * 26 9 7 28 28 C 1.34660 * 120.74978 * 0.25030 * 5 4 3 29 29 O 1.22063 * 119.98775 * 179.69927 * 28 5 4 30 30 C 1.36399 * 120.36808 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47207 * 90.00156 * 1 2 3 32 32 H 1.09001 * 109.47249 * 209.99579 * 1 2 3 33 33 H 1.08998 * 109.47453 * 330.00014 * 1 2 3 34 34 H 1.07999 * 120.02130 * 0.02562 * 3 2 1 35 35 H 1.07998 * 119.65050 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47287 * 330.00476 * 6 5 4 37 37 H 1.09000 * 109.47013 * 209.99715 * 6 5 4 38 38 H 1.09001 * 108.84700 * 275.41571 * 10 9 7 39 39 H 1.09002 * 108.85085 * 33.78101 * 10 9 7 40 40 H 1.09000 * 108.97678 * 163.40292 * 11 10 9 41 41 H 1.09009 * 108.97492 * 282.19321 * 11 10 9 42 42 H 1.09001 * 108.66751 * 65.66164 * 12 11 10 43 43 H 1.08998 * 108.66773 * 183.69470 * 12 11 10 44 44 H 1.08999 * 110.09805 * 270.29359 * 15 13 12 45 45 H 1.09000 * 110.10033 * 31.83664 * 15 13 12 46 46 H 0.97005 * 120.00129 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.84220 * 120.39752 * 25 16 15 48 48 H 1.09001 * 109.83551 * 241.30813 * 25 16 15 49 49 H 1.08006 * 120.34914 * 0.03964 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2210 0.0500 1.4214 8 8 5.4328 0.0405 2.3432 9 7 7.5460 0.0647 1.6677 10 6 8.4190 -0.0554 0.5226 11 6 9.7835 0.5614 0.7612 12 6 10.3249 0.2253 2.1337 13 6 9.3967 0.6087 3.2575 14 1 9.7553 0.1682 4.1878 15 6 9.3373 2.1418 3.4097 16 7 8.0059 2.4505 3.9492 17 6 7.6488 3.6255 4.5547 18 1 8.3740 4.4181 4.6657 19 6 6.3545 3.7981 5.0260 20 7 5.4708 2.8322 4.8912 21 14 5.8671 5.4015 5.8514 22 1 7.0346 6.3189 5.8790 23 1 4.7587 6.0327 5.0910 24 1 5.4208 5.1270 7.2409 25 6 7.1192 1.2996 3.7373 26 6 7.9453 0.2045 3.0453 27 1 7.7612 -0.7347 3.5671 28 6 3.6017 -1.1508 -0.0050 29 8 4.2312 -2.1965 -0.0105 30 6 2.1965 -1.1768 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6821 2.1486 0.0004 35 1 4.1103 2.1344 0.0009 36 1 6.0718 0.9383 -0.5132 37 1 6.0922 -0.8416 -0.5132 38 1 8.5466 -1.1118 0.2864 39 1 7.9528 0.4399 -0.3292 40 1 10.4769 0.1911 0.0061 41 1 9.7040 1.6446 0.6683 42 1 10.5080 -0.8481 2.1833 43 1 11.2719 0.7468 2.2726 44 1 10.1091 2.4798 4.1012 45 1 9.4691 2.6200 2.4391 46 1 4.5665 2.9526 5.2208 47 1 6.7484 0.9369 4.6959 48 1 6.2818 1.5898 3.1027 49 1 1.6683 -2.1189 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050152207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:38 Heat of formation + Delta-G solvation = -14.922972 kcal Electronic energy + Delta-G solvation = -32089.685631 eV Core-core repulsion = 28017.503221 eV Total energy + Delta-G solvation = -4072.182410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.67663 -41.69711 -39.23309 -38.09200 -37.09352 -36.24053 -34.77595 -33.79722 -31.89290 -31.17774 -30.43870 -29.02802 -27.69035 -27.29268 -25.55996 -24.67610 -23.52529 -23.00715 -22.32321 -21.07035 -19.35998 -18.88952 -18.57169 -18.48174 -18.20292 -17.30930 -17.08969 -16.94779 -16.40661 -16.05621 -15.89298 -15.67750 -15.20300 -15.18058 -14.99258 -14.78032 -14.43287 -14.17110 -14.12956 -14.03293 -13.72952 -13.52175 -13.31671 -13.10376 -12.97450 -12.93740 -12.82006 -12.68011 -12.48561 -12.44666 -12.05273 -11.97091 -11.77381 -11.65539 -11.48200 -11.34333 -11.10018 -10.98938 -10.72257 -10.38940 -9.49484 -8.99442 -8.84923 -7.78777 -5.19153 -0.13124 0.90166 1.42343 1.44605 1.47252 1.54811 1.54976 2.08604 2.48998 2.66188 3.34048 3.37617 3.59538 3.65022 3.68530 3.73589 3.81302 3.87805 3.98632 4.02408 4.02818 4.10267 4.12115 4.31342 4.36866 4.49788 4.59334 4.68100 4.68807 4.76130 4.82734 4.83777 4.89131 4.91965 4.96811 5.09811 5.14050 5.18957 5.21940 5.36193 5.44212 5.46504 5.47471 5.50119 5.63017 5.77767 5.99112 6.04855 6.22106 6.36600 6.95141 7.08242 7.19557 7.80723 8.43832 9.27320 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009014 B = 0.004617 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.621799 B = 6063.400604 C = 8567.144450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.032 3.968 3 C -0.231 4.231 4 C 0.138 3.862 5 N -0.482 5.482 6 C 0.078 3.922 7 C 0.474 3.526 8 O -0.556 6.556 9 N -0.583 5.583 10 C 0.097 3.903 11 C -0.123 4.123 12 C -0.100 4.100 13 C -0.089 4.089 14 H 0.077 0.923 15 C 0.138 3.862 16 N -0.629 5.629 17 C -0.245 4.245 18 H 0.085 0.915 19 C -0.066 4.066 20 N -0.942 5.942 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.290 1.290 24 H -0.298 1.298 25 C 0.190 3.810 26 C 0.144 3.856 27 H 0.036 0.964 28 C 0.505 3.495 29 O -0.608 6.608 30 C -0.288 4.288 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.241 0.759 47 H -0.012 1.012 48 H 0.045 0.955 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -3.148 -17.967 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.028 3.972 3 C -0.253 4.253 4 C 0.011 3.989 5 N -0.191 5.191 6 C -0.047 4.047 7 C 0.261 3.739 8 O -0.433 6.433 9 N -0.316 5.316 10 C -0.024 4.024 11 C -0.160 4.160 12 C -0.137 4.137 13 C -0.108 4.108 14 H 0.096 0.904 15 C 0.013 3.987 16 N -0.356 5.356 17 C -0.374 4.374 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.590 5.590 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.217 1.217 24 H -0.225 1.225 25 C 0.065 3.935 26 C 0.039 3.961 27 H 0.054 0.946 28 C 0.311 3.689 29 O -0.496 6.496 30 C -0.309 4.309 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.193 0.807 35 H 0.200 0.800 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.006 0.994 48 H 0.063 0.937 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.407 -3.725 -17.387 17.837 hybrid contribution -0.627 0.540 1.466 1.684 sum 0.780 -3.185 -15.920 16.255 Atomic orbital electron populations 1.21024 0.87652 1.04428 1.04554 1.20621 0.98690 0.91845 0.86056 1.20997 0.92236 1.00075 1.11988 1.22476 0.94623 0.89611 0.92159 1.45083 1.08003 1.07363 1.58618 1.22099 0.79091 1.09122 0.94374 1.21481 0.83303 0.76879 0.92224 1.90838 1.56568 1.48743 1.47163 1.46743 1.05768 1.71934 1.07145 1.21351 0.92079 1.02449 0.86552 1.21167 0.95325 1.01593 0.97943 1.20523 0.98065 1.02456 0.92693 1.21307 0.92551 0.96024 1.00951 0.90427 1.21614 0.86942 0.93593 0.96545 1.44719 1.08086 1.13913 1.68862 1.19464 0.95507 0.92106 1.30333 0.89744 1.25722 0.96469 1.01250 1.02478 1.70343 1.03620 1.33100 1.51921 0.85050 0.78094 0.79211 0.77211 1.18566 1.21675 1.22512 1.21129 0.91799 0.85119 0.95487 1.20612 0.96445 0.97450 0.81627 0.94615 1.17493 0.90344 0.82458 0.78630 1.90862 1.70215 1.31827 1.56676 1.21932 0.91517 1.00761 1.16692 0.87800 0.90609 0.89363 0.80720 0.79998 0.81992 0.84419 0.90380 0.88142 0.86346 0.91911 0.90647 0.89235 0.94457 0.95046 0.94971 0.99402 0.93702 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 10.03 71.23 0.71 -1.10 16 2 C 0.03 0.75 5.89 -19.82 -0.12 0.64 16 3 C -0.23 -5.20 9.71 22.08 0.21 -4.99 16 4 C 0.14 3.53 10.28 83.42 0.86 4.39 16 5 N -0.48 -14.85 2.07 -655.05 -1.36 -16.21 16 6 C 0.08 2.10 4.17 85.64 0.36 2.46 16 7 C 0.47 18.16 6.84 87.66 0.60 18.75 16 8 O -0.56 -28.44 13.75 -3.03 -0.04 -28.48 16 9 N -0.58 -19.67 3.09 -811.20 -2.51 -22.18 16 10 C 0.10 1.99 5.70 86.31 0.49 2.48 16 11 C -0.12 -2.14 5.83 29.60 0.17 -1.97 16 12 C -0.10 -2.13 5.17 29.30 0.15 -1.97 16 13 C -0.09 -2.95 3.05 -11.41 -0.03 -2.99 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 15 C 0.14 5.52 6.65 86.70 0.58 6.10 16 16 N -0.63 -33.50 3.39 -696.55 -2.36 -35.86 16 17 C -0.25 -14.11 10.25 84.04 0.86 -13.25 16 18 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 19 C -0.07 -3.89 5.48 84.86 0.47 -3.42 16 20 N -0.94 -60.50 10.26 21.65 0.22 -60.27 16 21 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 25 C 0.19 10.35 4.13 86.54 0.36 10.71 16 26 C 0.14 5.94 3.09 45.38 0.14 6.08 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 C 0.51 18.28 7.40 84.82 0.63 18.91 16 29 O -0.61 -26.11 16.64 -5.52 -0.09 -26.20 16 30 C -0.29 -8.69 9.65 22.40 0.22 -8.47 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.18 3.74 8.04 -2.91 -0.02 3.72 16 36 H 0.16 2.77 7.25 -2.39 -0.02 2.75 16 37 H 0.14 3.35 7.15 -2.39 -0.02 3.33 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.46 6.07 -2.39 -0.01 1.45 16 40 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.24 6.99 -2.38 -0.02 1.22 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.03 1.19 6.69 -2.39 -0.02 1.17 16 46 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 47 H -0.01 -0.80 7.36 -2.39 -0.02 -0.82 16 48 H 0.05 2.72 4.71 -2.39 -0.01 2.71 16 49 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -93.36 381.22 3.49 -89.86 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.95 Total: 17.97 kcal Atomic # 6 Polarization: 25.69 SS G_CDS: 6.65 Total: 32.34 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -6.01 Total: -134.52 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.13 Total: -54.68 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -93.36 3.49 -89.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050152207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.938 kcal (2) G-P(sol) polarization free energy of solvation -93.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds