Wall clock time and date at job start Wed Apr 1 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34868 * 119.09445 * 2 1 4 4 C 1.41669 * 119.33579 * 180.02562 * 3 2 1 5 5 O 1.22084 * 121.06947 * 180.02562 * 4 3 2 6 6 C 1.47097 * 117.86441 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88493 * 180.02562 * 6 4 3 8 8 O 1.21620 * 120.00038 * 6.60521 * 7 6 4 9 9 N 1.34778 * 120.00450 * 186.60424 * 7 6 4 10 10 C 1.47659 * 134.46104 * 184.81897 * 9 7 6 11 11 C 1.53517 * 85.98065 * 204.33770 * 10 9 7 12 12 C 1.47668 * 134.45213 * 4.84958 * 9 7 6 13 13 C 1.52667 * 113.57203 * 91.01404 * 11 10 9 14 14 C 1.53345 * 109.11257 * 73.81655 * 13 11 10 15 15 N 1.46875 * 108.76162 * 52.40210 * 14 13 11 16 16 C 1.36935 * 120.46426 * 124.47463 * 15 14 13 17 17 H 1.08000 * 120.00177 * 324.01981 * 16 15 14 18 18 C 1.38811 * 120.00153 * 144.30598 * 16 15 14 19 19 N 1.31621 * 119.99724 * 345.60364 * 18 16 15 20 20 Si 1.86799 * 120.00238 * 165.60654 * 18 16 15 21 21 H 1.48503 * 109.46858 * 89.99811 * 20 18 16 22 22 H 1.48498 * 109.46923 * 209.99724 * 20 18 16 23 23 H 1.48501 * 109.47207 * 329.99751 * 20 18 16 24 24 C 1.46880 * 119.07000 * 304.74498 * 15 14 13 25 25 C 1.52663 * 113.56094 * 222.23325 * 11 10 9 26 26 C 1.37991 * 118.23633 * 0.27433 * 6 4 3 27 27 N 1.34349 * 120.36894 * 359.44150 * 26 6 4 28 28 C 1.46501 * 118.80349 * 180.26843 * 27 26 6 29 29 H 1.09000 * 109.47238 * 96.42108 * 1 2 3 30 30 H 1.08996 * 109.46902 * 216.42017 * 1 2 3 31 31 H 1.09003 * 109.47195 * 336.42187 * 1 2 3 32 32 H 1.07998 * 120.33514 * 0.04532 * 3 2 1 33 33 H 1.08997 * 113.79299 * 90.06714 * 10 9 7 34 34 H 1.09000 * 113.89747 * 318.61703 * 10 9 7 35 35 H 1.09002 * 113.79143 * 41.39273 * 12 9 7 36 36 H 1.08996 * 113.79462 * 269.92653 * 12 9 7 37 37 H 1.09000 * 109.53598 * 313.92436 * 13 11 10 38 38 H 1.09003 * 109.59305 * 193.74198 * 13 11 10 39 39 H 1.08998 * 109.58829 * 292.61953 * 14 13 11 40 40 H 1.08994 * 109.58602 * 172.18543 * 14 13 11 41 41 H 0.96998 * 119.99677 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.59483 * 175.03993 * 24 15 14 43 43 H 1.08999 * 109.59077 * 295.47803 * 24 15 14 44 44 H 1.08999 * 109.53452 * 46.07970 * 25 11 10 45 45 H 1.09005 * 109.52805 * 166.22021 * 25 11 10 46 46 H 1.08001 * 119.81639 * 179.70720 * 26 6 4 47 47 H 1.09002 * 109.46817 * 271.62477 * 28 27 26 48 48 H 1.08998 * 109.47477 * 31.62826 * 28 27 26 49 49 H 1.08999 * 109.47253 * 151.62816 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1845 -0.0006 5 8 4.2051 2.2328 -0.0001 6 6 4.2725 -0.1130 -0.0017 7 6 5.7436 -0.1845 -0.0017 8 8 6.4018 0.8310 0.1203 9 7 6.3606 -1.3751 -0.1370 10 6 7.7672 -1.8220 -0.0921 11 6 7.3059 -3.0051 -0.9548 12 6 5.9007 -2.7553 -0.3902 13 6 7.4170 -2.7464 -2.4553 14 6 8.8933 -2.8025 -2.8665 15 7 9.4708 -4.0633 -2.3827 16 6 10.0850 -4.9244 -3.2524 17 1 9.7019 -5.0436 -4.2551 18 6 11.1963 -5.6486 -2.8434 19 7 11.8308 -5.3131 -1.7401 20 14 11.7914 -7.0993 -3.8587 21 1 12.7775 -6.6283 -4.8643 22 1 12.4328 -8.0981 -2.9664 23 1 10.6369 -7.7246 -4.5526 24 6 9.3752 -4.3903 -0.9539 25 6 7.9075 -4.3420 -0.5291 26 6 3.5077 -1.2616 -0.0080 27 7 2.1664 -1.1846 -0.0016 28 6 1.3881 -2.4258 -0.0026 29 1 -0.3634 -0.1149 -1.0212 30 1 -0.3633 -0.8269 0.6101 31 1 -0.3634 0.9419 0.4111 32 1 1.6135 2.1084 0.0007 33 1 8.1057 -2.1093 0.9034 34 1 8.4601 -1.1513 -0.6000 35 1 5.1085 -2.8250 -1.1356 36 1 5.6845 -3.3200 0.5167 37 1 7.0116 -1.7614 -2.6864 38 1 6.8580 -3.5074 -2.9998 39 1 9.4280 -1.9620 -2.4240 40 1 8.9720 -2.7575 -3.9526 41 1 12.6076 -5.8190 -1.4545 42 1 9.7713 -5.3909 -0.7806 43 1 9.9445 -3.6640 -0.3739 44 1 7.8365 -4.4454 0.5536 45 1 7.3638 -5.1557 -1.0092 46 1 3.9900 -2.2279 -0.0137 47 1 1.2151 -2.7453 -1.0303 48 1 1.9388 -3.2004 0.5310 49 1 0.4313 -2.2550 0.4907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050554712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:28 Heat of formation + Delta-G solvation = 10.431271 kcal Electronic energy + Delta-G solvation = -30908.091624 eV Core-core repulsion = 26837.008657 eV Total energy + Delta-G solvation = -4071.082968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.40137 -41.58765 -39.61746 -38.71363 -37.40562 -34.66680 -34.12872 -33.62768 -32.12473 -31.44291 -29.58371 -28.30644 -27.64870 -27.17644 -26.05683 -24.93488 -23.94457 -22.80103 -22.44097 -20.81568 -19.62142 -19.06785 -18.33469 -18.17327 -17.44476 -17.03776 -16.86476 -16.75089 -16.58011 -16.36839 -15.70363 -15.43264 -15.36001 -15.15818 -14.86744 -14.67694 -14.45553 -14.31547 -13.98087 -13.87376 -13.83407 -13.77734 -13.39732 -13.25166 -13.00080 -12.97643 -12.85354 -12.61971 -12.56835 -12.46649 -12.28308 -12.02658 -11.82251 -11.39850 -11.29054 -11.21260 -10.91509 -10.51980 -10.49723 -10.28869 -9.72013 -9.05619 -8.52554 -7.84663 -5.39156 -0.22145 0.31176 1.46365 1.48602 1.49760 1.59488 1.75644 1.86421 2.52955 2.75332 3.14650 3.27445 3.36489 3.46907 3.58682 3.72112 3.77999 3.85435 3.91759 4.11738 4.21022 4.28027 4.36988 4.43051 4.47258 4.48929 4.55704 4.64293 4.72253 4.72642 4.72755 4.81711 4.82212 4.87578 4.88907 4.94582 5.05577 5.16814 5.18253 5.21335 5.34795 5.37153 5.38592 5.53080 5.70022 5.71189 5.79488 5.81527 6.46456 6.72789 7.07215 7.20731 7.23679 7.88580 8.44575 9.20300 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.002469 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.503116 B =11339.351063 C =12038.299025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.188 3.812 3 C -0.306 4.306 4 C 0.380 3.620 5 O -0.572 6.572 6 C -0.348 4.348 7 C 0.583 3.417 8 O -0.593 6.593 9 N -0.642 5.642 10 C 0.110 3.890 11 C -0.068 4.068 12 C 0.104 3.896 13 C -0.094 4.094 14 C 0.143 3.857 15 N -0.605 5.605 16 C -0.267 4.267 17 H 0.061 0.939 18 C -0.043 4.043 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.265 1.265 24 C 0.178 3.822 25 C -0.108 4.108 26 C 0.211 3.789 27 N -0.455 5.455 28 C 0.028 3.972 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.053 0.947 38 H 0.082 0.918 39 H -0.005 1.005 40 H 0.048 0.952 41 H 0.250 0.750 42 H 0.046 0.954 43 H -0.010 1.010 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.213 0.787 47 H 0.106 0.894 48 H 0.117 0.883 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.283 -3.217 5.889 33.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.081 3.919 3 C -0.329 4.329 4 C 0.274 3.726 5 O -0.461 6.461 6 C -0.358 4.358 7 C 0.377 3.623 8 O -0.474 6.474 9 N -0.377 5.377 10 C -0.013 4.013 11 C -0.069 4.069 12 C -0.016 4.016 13 C -0.133 4.133 14 C 0.017 3.983 15 N -0.328 5.328 16 C -0.397 4.397 17 H 0.079 0.921 18 C -0.239 4.239 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.189 1.189 24 C 0.053 3.947 25 C -0.147 4.147 26 C 0.077 3.923 27 N -0.138 5.138 28 C -0.111 4.111 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.173 0.827 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.013 0.987 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.008 0.992 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.229 0.771 47 H 0.125 0.875 48 H 0.136 0.864 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -32.759 -2.203 6.041 33.384 hybrid contribution 1.968 0.281 -0.458 2.040 sum -30.791 -1.922 5.584 31.352 Atomic orbital electron populations 1.21429 0.83705 1.06907 1.06176 1.20892 0.97153 0.83919 0.89985 1.22125 0.93754 0.99625 1.17399 1.19020 0.90541 0.87735 0.75346 1.90764 1.71838 1.35677 1.47813 1.22145 0.92718 0.96503 1.24478 1.17754 0.87295 0.81630 0.75667 1.90794 1.67776 1.35949 1.52849 1.50012 1.09850 1.06525 1.71318 1.23271 0.83770 0.93960 1.00276 1.21831 0.95670 0.94401 0.95015 1.23856 0.97288 0.78498 1.02002 1.21563 0.97018 1.00717 0.93985 1.20968 0.92823 0.87439 0.97085 1.44166 1.65951 1.17936 1.04760 1.19401 1.06328 1.17671 0.96321 0.92139 1.25999 0.95788 1.03192 0.98951 1.70178 1.20333 1.40969 1.26290 0.85320 0.78190 0.79271 0.77875 1.21660 1.21792 1.18915 1.20447 0.92997 0.98003 0.83274 1.21828 0.96666 0.95278 1.00937 1.23146 0.82980 1.00004 0.86189 1.43279 1.04883 1.09146 1.56530 1.23207 0.98732 0.82042 1.07073 0.87044 0.86586 0.88376 0.82725 0.88783 0.93762 0.86745 0.84936 0.92794 0.89985 0.98747 0.93323 0.94102 0.93533 0.99183 0.89644 0.90455 0.77123 0.87528 0.86417 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.20 9.31 71.24 0.66 0.87 16 2 C 0.19 1.75 6.64 41.21 0.27 2.03 16 3 C -0.31 -6.50 9.57 22.34 0.21 -6.29 16 4 C 0.38 13.28 6.96 25.44 0.18 13.45 16 5 O -0.57 -27.63 16.43 13.40 0.22 -27.41 16 6 C -0.35 -10.16 6.05 -18.63 -0.11 -10.27 16 7 C 0.58 22.05 7.99 86.62 0.69 22.74 16 8 O -0.59 -30.53 16.33 14.90 0.24 -30.29 16 9 N -0.64 -18.82 3.43 -846.52 -2.90 -21.73 16 10 C 0.11 3.58 7.63 86.33 0.66 4.24 16 11 C -0.07 -1.86 0.77 -52.04 -0.04 -1.90 16 12 C 0.10 1.75 5.39 86.31 0.46 2.22 16 13 C -0.09 -2.98 5.22 30.60 0.16 -2.82 16 14 C 0.14 6.09 6.38 86.42 0.55 6.64 16 15 N -0.60 -29.53 2.92 -699.69 -2.04 -31.58 16 16 C -0.27 -14.37 9.48 84.03 0.80 -13.58 16 17 H 0.06 3.19 7.87 -2.91 -0.02 3.17 16 18 C -0.04 -2.36 4.92 84.86 0.42 -1.95 16 19 N -0.93 -54.85 11.59 21.65 0.25 -54.60 16 20 Si 0.97 43.81 29.58 68.60 2.03 45.84 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.18 7.96 5.15 86.26 0.44 8.40 16 25 C -0.11 -3.18 5.24 30.44 0.16 -3.02 16 26 C 0.21 2.84 9.38 84.25 0.79 3.63 16 27 N -0.46 -2.80 2.97 -532.76 -1.58 -4.38 16 28 C 0.03 -0.17 10.11 127.77 1.29 1.13 16 29 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.12 -0.89 5.95 -2.39 -0.01 -0.91 16 31 H 0.10 -0.11 7.97 -2.39 -0.02 -0.13 16 32 H 0.16 2.97 8.00 -2.91 -0.02 2.94 16 33 H 0.09 2.83 8.07 -2.39 -0.02 2.81 16 34 H 0.04 1.77 7.41 -2.39 -0.02 1.76 16 35 H 0.11 1.17 6.79 -2.39 -0.02 1.16 16 36 H 0.13 1.17 8.04 -2.39 -0.02 1.15 16 37 H 0.05 1.73 8.01 -2.39 -0.02 1.71 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H -0.01 -0.26 7.49 -2.39 -0.02 -0.27 16 40 H 0.05 2.08 7.92 -2.39 -0.02 2.06 16 41 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.05 2.35 6.48 -2.38 -0.02 2.33 16 43 H -0.01 -0.49 8.07 -2.39 -0.02 -0.51 16 44 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 45 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.21 1.26 4.03 -2.91 -0.01 1.25 16 47 H 0.11 -0.90 8.14 -2.39 -0.02 -0.91 16 48 H 0.12 -1.10 7.99 -2.39 -0.02 -1.12 16 49 H 0.13 -1.33 5.62 -2.39 -0.01 -1.34 16 Total: -1.00 -104.43 385.47 4.78 -99.66 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: 0.97 Total: -1.02 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 7.60 Total: 25.51 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -6.28 Total: -112.29 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: 0.46 Total: -57.70 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -104.43 4.78 -99.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050554712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.087 kcal (2) G-P(sol) polarization free energy of solvation -104.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds