Wall clock time and date at job start Wed Apr 1 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38351 * 119.46192 * 2 1 4 4 C 1.38356 * 119.30366 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.85556 * 179.97438 * 4 3 2 6 6 C 1.40021 * 118.28904 * 0.25822 * 4 3 2 7 7 C 1.47845 * 120.56126 * 179.72815 * 6 4 3 8 8 O 1.21545 * 120.00406 * 89.99489 * 7 6 4 9 9 N 1.34777 * 119.99665 * 269.99502 * 7 6 4 10 10 C 1.47133 * 121.05431 * 359.97438 * 9 7 6 11 11 C 1.53226 * 108.72569 * 127.77297 * 10 9 7 12 12 O 1.43109 * 109.34286 * 54.12754 * 11 10 9 13 13 C 1.42482 * 113.97939 * 300.04544 * 12 11 10 14 14 C 1.53473 * 113.76931 * 286.79182 * 13 12 11 15 15 N 1.47670 * 85.97032 * 268.71741 * 14 13 12 16 16 C 1.36929 * 134.45401 * 155.73718 * 15 14 13 17 17 H 1.08000 * 120.00582 * 179.97438 * 16 15 14 18 18 C 1.38821 * 120.00113 * 359.95738 * 16 15 14 19 19 N 1.31619 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47181 * 90.00044 * 20 18 16 22 22 H 1.48498 * 109.47251 * 209.99820 * 20 18 16 23 23 H 1.48501 * 109.47430 * 330.00194 * 20 18 16 24 24 C 1.47667 * 91.08995 * 335.71108 * 15 14 13 25 25 C 1.47339 * 121.05591 * 179.72044 * 9 7 6 26 26 C 1.39525 * 118.87822 * 359.51688 * 6 4 3 27 27 C 1.50706 * 119.71566 * 180.25023 * 26 6 4 28 28 N 1.31696 * 120.56766 * 0.49455 * 26 6 4 29 29 H 1.09002 * 109.47236 * 89.99364 * 1 2 3 30 30 H 1.08994 * 109.46985 * 210.00195 * 1 2 3 31 31 H 1.09003 * 109.46571 * 329.99713 * 1 2 3 32 32 H 1.08005 * 120.34980 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47152 * 90.00183 * 5 4 3 34 34 H 1.09001 * 109.46980 * 330.00283 * 5 4 3 35 35 H 1.09004 * 109.47113 * 210.00264 * 5 4 3 36 36 H 1.08997 * 109.59944 * 247.54900 * 10 9 7 37 37 H 1.09006 * 109.59696 * 8.00211 * 10 9 7 38 38 H 1.09001 * 109.49381 * 174.08940 * 11 10 9 39 39 H 1.08998 * 109.49304 * 294.14732 * 11 10 9 40 40 H 1.08999 * 113.78830 * 22.98155 * 14 13 12 41 41 H 1.08992 * 113.79078 * 154.45196 * 14 13 12 42 42 H 0.96989 * 120.00245 * 180.02562 * 19 18 16 43 43 H 1.09003 * 113.78933 * 270.03337 * 24 15 14 44 44 H 1.08997 * 113.90510 * 138.57383 * 24 15 14 45 45 H 1.09002 * 109.74249 * 348.03140 * 25 9 7 46 46 H 1.08997 * 109.74387 * 108.75200 * 25 9 7 47 47 H 1.08994 * 109.46970 * 270.24267 * 27 26 6 48 48 H 1.09000 * 109.46670 * 30.24058 * 27 26 6 49 49 H 1.08996 * 109.47287 * 150.23820 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4924 0.0000 6 6 4.2312 -0.0340 -0.0045 7 6 5.7083 -0.0967 -0.0102 8 8 6.3196 -0.1245 1.0400 9 7 6.3771 -0.1230 -1.1800 10 6 5.6607 -0.0908 -2.4648 11 6 6.2449 1.0340 -3.3257 12 8 7.6610 0.8600 -3.4359 13 6 8.3463 0.8836 -2.1868 14 6 8.4461 2.2820 -1.5625 15 7 9.7302 2.3979 -2.2824 16 6 10.4851 3.4473 -2.7340 17 1 11.4165 3.2608 -3.2479 18 6 10.0530 4.7509 -2.5318 19 7 8.9175 4.9783 -1.9062 20 14 11.0832 6.1824 -3.1473 21 1 10.6754 6.5259 -4.5333 22 1 10.8748 7.3580 -2.2643 23 1 12.5184 5.8014 -3.1337 24 6 9.8743 0.9288 -2.3194 25 6 7.8491 -0.1792 -1.2130 26 6 3.4715 -1.2043 0.0005 27 6 4.1626 -2.5436 0.0009 28 7 2.1558 -1.1487 0.0000 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6444 2.1382 -0.0004 33 1 4.5344 2.8044 1.0275 34 1 3.7721 3.2620 -0.5146 35 1 5.2977 2.3449 -0.5134 36 1 5.7849 -1.0451 -2.9766 37 1 4.6015 0.0965 -2.2881 38 1 5.7962 1.0026 -4.3186 39 1 6.0315 1.9964 -2.8605 40 1 7.6815 2.9755 -1.9126 41 1 8.5495 2.2727 -0.4775 42 1 8.6154 5.8891 -1.7652 43 1 10.4026 0.5169 -1.4595 44 1 10.2447 0.5451 -3.2701 45 1 8.2475 0.0191 -0.2179 46 1 8.1725 -1.1639 -1.5503 47 1 4.3296 -2.8665 -1.0266 48 1 5.1199 -2.4582 0.5151 49 1 3.5382 -3.2745 0.5147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053349335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:36 Heat of formation + Delta-G solvation = 20.721340 kcal Electronic energy + Delta-G solvation = -31942.499407 eV Core-core repulsion = 27871.862650 eV Total energy + Delta-G solvation = -4070.636757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.18935 -39.98580 -38.52281 -36.24913 -34.53283 -34.33705 -33.89068 -32.27067 -30.08934 -29.42679 -28.43145 -27.77438 -27.32172 -25.82972 -25.11485 -23.35508 -22.78208 -21.69454 -21.16363 -19.61660 -18.82706 -17.54363 -17.22287 -16.83588 -16.42758 -15.76488 -15.24351 -15.07666 -14.99876 -14.83028 -14.54679 -14.22085 -14.11781 -13.59209 -13.49898 -13.39300 -13.35426 -13.31614 -13.07637 -12.86774 -12.60365 -12.45471 -12.38097 -12.26561 -12.09878 -11.90699 -11.76806 -11.37000 -11.17425 -10.89171 -10.84221 -10.68282 -10.34614 -10.18429 -9.88980 -9.63976 -9.60807 -9.47441 -9.28252 -8.94239 -8.84109 -8.30517 -6.89435 -5.76705 -3.08578 0.70414 1.01633 2.52897 2.88573 3.39512 3.42038 3.44122 3.45939 3.91228 4.01377 4.29734 4.39401 4.42729 4.45017 4.83656 4.88174 5.00487 5.07303 5.10067 5.19436 5.21851 5.24112 5.28417 5.28787 5.29941 5.36997 5.39281 5.46334 5.54499 5.55990 5.65557 5.69110 5.78336 5.83860 5.88774 5.91645 6.01232 6.04706 6.13380 6.26225 6.39323 6.45415 6.47268 6.53228 6.97133 7.15556 7.32683 7.47857 7.74914 7.77871 7.96611 8.10221 9.03532 9.70293 10.56316 11.40482 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.003222 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.654634 B = 8688.115339 C = 9494.709945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.182 4.182 4 C 0.004 3.996 5 C -0.127 4.127 6 C -0.181 4.181 7 C 0.575 3.425 8 O -0.528 6.528 9 N -0.600 5.600 10 C 0.076 3.924 11 C 0.048 3.952 12 O -0.340 6.340 13 C 0.048 3.952 14 C 0.151 3.849 15 N -0.603 5.603 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.137 3.863 25 C 0.099 3.901 26 C 0.170 3.830 27 C -0.110 4.110 28 N -0.490 5.490 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.252 0.748 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -12.233 1.422 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.007 3.993 3 C -0.202 4.202 4 C -0.004 4.004 5 C -0.183 4.183 6 C -0.186 4.186 7 C 0.362 3.638 8 O -0.404 6.404 9 N -0.333 5.333 10 C -0.047 4.047 11 C -0.029 4.029 12 O -0.257 6.257 13 C 0.007 3.993 14 C 0.026 3.974 15 N -0.328 5.328 16 C -0.346 4.346 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.010 3.990 25 C -0.024 4.024 26 C 0.032 3.968 27 C -0.167 4.167 28 N -0.200 5.200 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.340 -12.687 1.756 20.762 hybrid contribution 0.784 1.758 -0.039 1.925 sum -15.556 -10.929 1.717 19.089 Atomic orbital electron populations 1.20741 0.88544 1.03600 1.03249 1.21388 0.97066 0.88077 0.92771 1.21774 0.93628 0.99550 1.05252 1.20417 0.93796 0.94609 0.91574 1.20980 1.00405 0.93009 1.03954 1.20601 0.94385 0.94687 1.08946 1.17991 0.86317 0.75968 0.83560 1.90806 1.68925 1.49752 1.30960 1.48136 1.07340 1.72456 1.05401 1.22423 0.96913 1.00834 0.84578 1.22857 0.82928 0.96993 1.00172 1.87941 1.17241 1.92975 1.27583 1.23628 0.94490 0.96413 0.84805 1.22689 0.90138 0.90374 0.94246 1.45758 1.22954 0.99166 1.64964 1.18997 1.01815 0.83949 1.29794 0.90115 1.24757 0.97745 0.97028 1.00867 1.69805 1.21489 1.19295 1.46388 0.86112 0.79416 0.82131 0.78049 1.21557 1.21696 1.20678 1.22484 0.89638 0.87393 0.99463 1.22247 0.78239 0.99691 1.02250 1.21240 0.88896 0.94470 0.92206 1.20803 1.00202 0.92246 1.03441 1.67359 1.08709 1.29133 1.14846 0.90156 0.90356 0.90529 0.84201 0.89588 0.90151 0.90291 0.90441 0.89665 0.88101 0.92135 0.90610 0.94913 0.93755 0.93200 0.92543 0.87871 0.90993 0.89938 0.90385 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.16 36.01 0.37 -0.36 16 2 C 0.14 1.52 6.78 -82.51 -0.56 0.96 16 3 C -0.18 -1.90 9.43 -39.50 -0.37 -2.27 16 4 C 0.00 0.05 5.81 -103.91 -0.60 -0.55 16 5 C -0.13 -1.62 9.70 36.01 0.35 -1.27 16 6 C -0.18 -2.49 3.70 -104.82 -0.39 -2.88 16 7 C 0.58 9.04 4.25 -12.33 -0.05 8.99 16 8 O -0.53 -10.09 16.59 5.33 0.09 -10.00 16 9 N -0.60 -8.82 3.03 -173.79 -0.53 -9.34 16 10 C 0.08 0.94 6.50 -3.58 -0.02 0.92 16 11 C 0.05 0.71 6.88 37.27 0.26 0.97 16 12 O -0.34 -6.37 10.52 -35.23 -0.37 -6.74 16 13 C 0.05 0.92 1.21 -90.50 -0.11 0.81 16 14 C 0.15 3.57 6.64 -3.16 -0.02 3.55 16 15 N -0.60 -15.58 3.70 -180.31 -0.67 -16.24 16 16 C -0.22 -6.16 10.70 -15.06 -0.16 -6.33 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.25 11.39 55.49 0.63 -26.62 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.14 2.80 8.33 -3.18 -0.03 2.77 16 25 C 0.10 1.57 5.75 -3.85 -0.02 1.55 16 26 C 0.17 2.16 6.82 -82.17 -0.56 1.60 16 27 C -0.11 -1.16 9.78 36.01 0.35 -0.81 16 28 N -0.49 -6.02 10.17 -5.42 -0.06 -6.08 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.08 1.20 7.18 -51.93 -0.37 0.83 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.97 6.30 -51.93 -0.33 0.64 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.99 7.20 -51.93 -0.37 0.62 16 40 H 0.08 1.98 6.31 -51.93 -0.33 1.65 16 41 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.10 1.78 6.89 -51.93 -0.36 1.43 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 0.91 7.08 -51.93 -0.37 0.54 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -34.48 394.83 -9.22 -43.69 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.57 Total: 0.80 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -1.67 Total: 7.34 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.62 Total: -58.29 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.28 Total: -16.74 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.48 -9.22 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053349335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.416 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds