Wall clock time and date at job start Wed Apr 1 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38351 * 119.46192 * 2 1 4 4 C 1.38356 * 119.30366 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.85556 * 179.97438 * 4 3 2 6 6 C 1.40021 * 118.28904 * 0.25822 * 4 3 2 7 7 C 1.47845 * 120.56126 * 179.72815 * 6 4 3 8 8 O 1.21545 * 120.00406 * 89.99489 * 7 6 4 9 9 N 1.34777 * 119.99665 * 269.99502 * 7 6 4 10 10 C 1.47133 * 121.05431 * 359.97438 * 9 7 6 11 11 C 1.53226 * 108.72569 * 127.77297 * 10 9 7 12 12 O 1.43109 * 109.34286 * 54.12754 * 11 10 9 13 13 C 1.42482 * 113.97939 * 300.04544 * 12 11 10 14 14 C 1.53473 * 113.76931 * 286.79182 * 13 12 11 15 15 N 1.47670 * 85.97032 * 268.71741 * 14 13 12 16 16 C 1.36929 * 134.45401 * 155.73718 * 15 14 13 17 17 H 1.08000 * 120.00582 * 179.97438 * 16 15 14 18 18 C 1.38821 * 120.00113 * 359.95738 * 16 15 14 19 19 N 1.31619 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47181 * 90.00044 * 20 18 16 22 22 H 1.48498 * 109.47251 * 209.99820 * 20 18 16 23 23 H 1.48501 * 109.47430 * 330.00194 * 20 18 16 24 24 C 1.47667 * 91.08995 * 335.71108 * 15 14 13 25 25 C 1.47339 * 121.05591 * 179.72044 * 9 7 6 26 26 C 1.39525 * 118.87822 * 359.51688 * 6 4 3 27 27 C 1.50706 * 119.71566 * 180.25023 * 26 6 4 28 28 N 1.31696 * 120.56766 * 0.49455 * 26 6 4 29 29 H 1.09002 * 109.47236 * 89.99364 * 1 2 3 30 30 H 1.08994 * 109.46985 * 210.00195 * 1 2 3 31 31 H 1.09003 * 109.46571 * 329.99713 * 1 2 3 32 32 H 1.08005 * 120.34980 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47152 * 90.00183 * 5 4 3 34 34 H 1.09001 * 109.46980 * 330.00283 * 5 4 3 35 35 H 1.09004 * 109.47113 * 210.00264 * 5 4 3 36 36 H 1.08997 * 109.59944 * 247.54900 * 10 9 7 37 37 H 1.09006 * 109.59696 * 8.00211 * 10 9 7 38 38 H 1.09001 * 109.49381 * 174.08940 * 11 10 9 39 39 H 1.08998 * 109.49304 * 294.14732 * 11 10 9 40 40 H 1.08999 * 113.78830 * 22.98155 * 14 13 12 41 41 H 1.08992 * 113.79078 * 154.45196 * 14 13 12 42 42 H 0.96989 * 120.00245 * 180.02562 * 19 18 16 43 43 H 1.09003 * 113.78933 * 270.03337 * 24 15 14 44 44 H 1.08997 * 113.90510 * 138.57383 * 24 15 14 45 45 H 1.09002 * 109.74249 * 348.03140 * 25 9 7 46 46 H 1.08997 * 109.74387 * 108.75200 * 25 9 7 47 47 H 1.08994 * 109.46970 * 270.24267 * 27 26 6 48 48 H 1.09000 * 109.46670 * 30.24058 * 27 26 6 49 49 H 1.08996 * 109.47287 * 150.23820 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4924 0.0000 6 6 4.2312 -0.0340 -0.0045 7 6 5.7083 -0.0967 -0.0102 8 8 6.3196 -0.1245 1.0400 9 7 6.3771 -0.1230 -1.1800 10 6 5.6607 -0.0908 -2.4648 11 6 6.2449 1.0340 -3.3257 12 8 7.6610 0.8600 -3.4359 13 6 8.3463 0.8836 -2.1868 14 6 8.4461 2.2820 -1.5625 15 7 9.7302 2.3979 -2.2824 16 6 10.4851 3.4473 -2.7340 17 1 11.4165 3.2608 -3.2479 18 6 10.0530 4.7509 -2.5318 19 7 8.9175 4.9783 -1.9062 20 14 11.0832 6.1824 -3.1473 21 1 10.6754 6.5259 -4.5333 22 1 10.8748 7.3580 -2.2643 23 1 12.5184 5.8014 -3.1337 24 6 9.8743 0.9288 -2.3194 25 6 7.8491 -0.1792 -1.2130 26 6 3.4715 -1.2043 0.0005 27 6 4.1626 -2.5436 0.0009 28 7 2.1558 -1.1487 0.0000 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6444 2.1382 -0.0004 33 1 4.5344 2.8044 1.0275 34 1 3.7721 3.2620 -0.5146 35 1 5.2977 2.3449 -0.5134 36 1 5.7849 -1.0451 -2.9766 37 1 4.6015 0.0965 -2.2881 38 1 5.7962 1.0026 -4.3186 39 1 6.0315 1.9964 -2.8605 40 1 7.6815 2.9755 -1.9126 41 1 8.5495 2.2727 -0.4775 42 1 8.6154 5.8891 -1.7652 43 1 10.4026 0.5169 -1.4595 44 1 10.2447 0.5451 -3.2701 45 1 8.2475 0.0191 -0.2179 46 1 8.1725 -1.1639 -1.5503 47 1 4.3296 -2.8665 -1.0266 48 1 5.1199 -2.4582 0.5151 49 1 3.5382 -3.2745 0.5147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053349335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:35 Heat of formation + Delta-G solvation = -2.365754 kcal Electronic energy + Delta-G solvation = -31943.500538 eV Core-core repulsion = 27871.862650 eV Total energy + Delta-G solvation = -4071.637888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28028 -41.26810 -39.85725 -37.80775 -35.84845 -35.30715 -34.76375 -34.27005 -31.58931 -30.23132 -29.60402 -28.97451 -28.53963 -27.25813 -26.87684 -24.72097 -24.05887 -22.99378 -22.15171 -20.91707 -20.24173 -18.86238 -18.66821 -18.16291 -17.76096 -17.23108 -16.87842 -16.30744 -16.09246 -15.86955 -15.77693 -15.71552 -15.44076 -15.01424 -14.86762 -14.62698 -14.38698 -14.19289 -14.16166 -14.03785 -13.88008 -13.75388 -13.41617 -13.19387 -13.15205 -13.00152 -12.92345 -12.78759 -12.72519 -12.65515 -12.55687 -12.12450 -11.98035 -11.75663 -11.57441 -11.20457 -10.97913 -10.84902 -10.58086 -10.47872 -9.81755 -9.64362 -8.95699 -7.91845 -5.25858 -0.20072 0.10474 1.31958 1.43365 1.45895 1.54086 1.72527 2.44707 2.53493 2.59733 3.09005 3.24985 3.27283 3.34130 3.47971 3.56752 3.60188 3.72193 3.88345 4.01249 4.04931 4.23079 4.26567 4.28147 4.38819 4.47539 4.48115 4.54061 4.55572 4.61098 4.61736 4.68401 4.69324 4.76207 4.79080 4.83701 4.87971 4.93200 5.06627 5.10698 5.12103 5.13926 5.19928 5.20600 5.22763 5.44396 5.62875 5.87703 6.13852 6.29643 6.85246 6.87972 6.90995 7.57556 8.50502 9.24676 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.003222 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.654634 B = 8688.115339 C = 9494.709945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.144 3.856 3 C -0.176 4.176 4 C -0.007 4.007 5 C -0.122 4.122 6 C -0.201 4.201 7 C 0.579 3.421 8 O -0.572 6.572 9 N -0.599 5.599 10 C 0.084 3.916 11 C 0.044 3.956 12 O -0.357 6.357 13 C 0.077 3.923 14 C 0.153 3.847 15 N -0.634 5.634 16 C -0.233 4.233 17 H 0.086 0.914 18 C -0.067 4.067 19 N -0.954 5.954 20 Si 0.980 3.020 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.268 1.268 24 C 0.135 3.865 25 C 0.107 3.893 26 C 0.166 3.834 27 C -0.107 4.107 28 N -0.501 5.501 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.170 0.830 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.247 0.753 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.062 0.938 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 -13.591 0.144 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.007 3.993 3 C -0.196 4.196 4 C -0.015 4.015 5 C -0.179 4.179 6 C -0.207 4.207 7 C 0.367 3.633 8 O -0.452 6.452 9 N -0.331 5.331 10 C -0.038 4.038 11 C -0.033 4.033 12 O -0.275 6.275 13 C 0.035 3.965 14 C 0.027 3.973 15 N -0.360 5.360 16 C -0.361 4.361 17 H 0.104 0.896 18 C -0.260 4.260 19 N -0.603 5.603 20 Si 0.808 3.192 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.193 1.193 24 C 0.010 3.990 25 C -0.017 4.017 26 C 0.028 3.972 27 C -0.164 4.164 28 N -0.212 5.212 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.187 0.813 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.151 0.849 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.081 0.919 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.155 -14.088 0.446 22.984 hybrid contribution 1.266 2.182 0.347 2.547 sum -16.888 -11.906 0.793 20.679 Atomic orbital electron populations 1.20863 0.85745 1.04722 1.04547 1.22045 0.98852 0.87549 0.90892 1.22066 0.92557 1.00981 1.03965 1.20476 0.94884 0.93775 0.92354 1.20902 0.99364 0.94277 1.03318 1.20501 0.92948 0.95818 1.11401 1.18309 0.87238 0.74728 0.82998 1.90772 1.70057 1.51819 1.32507 1.48194 1.06869 1.71837 1.06236 1.22515 0.97142 1.01132 0.83008 1.23097 0.81094 0.96767 1.02305 1.87900 1.19463 1.92914 1.27272 1.23123 0.94057 0.94138 0.85151 1.22513 0.88844 0.93116 0.92819 1.46154 1.23618 1.01122 1.65124 1.19420 1.02138 0.85125 1.29411 0.89622 1.25632 0.99067 0.99649 1.01661 1.70013 1.23118 1.19236 1.47893 0.85055 0.78414 0.78482 0.77229 1.21106 1.22145 1.19310 1.22713 0.91100 0.84421 1.00767 1.22058 0.79272 0.99970 1.00372 1.21481 0.89219 0.94705 0.91816 1.20821 0.99404 0.91654 1.04507 1.67470 1.08309 1.30030 1.15405 0.88566 0.90299 0.88390 0.81275 0.90353 0.88025 0.93510 0.87520 0.88226 0.84942 0.94754 0.93926 0.97336 0.94397 0.91066 0.91367 0.89598 0.87635 0.88123 0.91897 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 71.24 0.72 -0.33 16 2 C 0.14 2.65 6.78 42.57 0.29 2.94 16 3 C -0.18 -3.27 9.43 22.32 0.21 -3.06 16 4 C -0.01 -0.17 5.81 -19.40 -0.11 -0.28 16 5 C -0.12 -3.22 9.70 71.24 0.69 -2.53 16 6 C -0.20 -5.47 3.70 -19.99 -0.07 -5.55 16 7 C 0.58 18.55 4.25 86.79 0.37 18.92 16 8 O -0.57 -22.86 16.59 -3.86 -0.06 -22.92 16 9 N -0.60 -17.45 3.03 -822.01 -2.49 -19.94 16 10 C 0.08 1.94 6.50 86.33 0.56 2.50 16 11 C 0.04 1.27 6.88 72.06 0.50 1.76 16 12 O -0.36 -13.19 10.52 -148.98 -1.57 -14.75 16 13 C 0.08 2.95 1.21 -10.62 -0.01 2.94 16 14 C 0.15 7.62 6.64 86.31 0.57 8.20 16 15 N -0.63 -33.66 3.70 -729.24 -2.70 -36.36 16 16 C -0.23 -13.43 10.70 84.04 0.90 -12.53 16 17 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 19 N -0.95 -58.71 11.39 21.65 0.25 -58.46 16 20 Si 0.98 46.64 29.55 68.60 2.03 48.66 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.14 5.51 8.33 86.30 0.72 6.23 16 25 C 0.11 3.37 5.75 86.05 0.49 3.86 16 26 C 0.17 4.00 6.82 42.89 0.29 4.29 16 27 C -0.11 -2.11 9.78 71.24 0.70 -1.42 16 28 N -0.50 -11.27 10.17 -171.05 -1.74 -13.01 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.63 8.07 -2.39 -0.02 0.61 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.10 2.14 8.10 -2.39 -0.02 2.12 16 35 H 0.05 1.53 7.18 -2.38 -0.02 1.51 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 2.07 6.30 -2.38 -0.02 2.05 16 38 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 40 H 0.04 2.38 6.31 -2.39 -0.02 2.37 16 41 H 0.01 0.48 7.92 -2.39 -0.02 0.46 16 42 H 0.25 14.76 8.31 -92.72 -0.77 13.99 16 43 H 0.07 2.62 8.09 -2.39 -0.02 2.61 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.09 3.06 6.89 -2.39 -0.02 3.05 16 46 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.06 1.44 7.08 -2.39 -0.02 1.43 16 49 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.53 394.83 1.95 -76.58 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.95 Total: 17.72 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 7.28 Total: 22.49 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -6.68 Total: -127.77 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.63 Total: -37.68 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.53 1.95 -76.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053349335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.218 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds