Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38605 * 120.32382 * 2 1 4 4 N 1.31494 * 120.89873 * 179.97438 * 3 2 1 5 5 C 1.32741 * 121.64493 * 0.02621 * 4 3 2 6 6 C 1.48169 * 119.72323 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00208 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99848 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99883 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.08992 * 110.63874 * 307.87772 * 10 9 8 12 12 C 1.55059 * 110.58197 * 184.99868 * 10 9 8 13 13 C 1.55030 * 102.12935 * 204.93083 * 12 10 9 14 14 C 1.53322 * 103.78366 * 20.86698 * 13 12 10 15 15 C 1.52652 * 115.56243 * 133.64213 * 14 13 12 16 16 N 1.47222 * 87.77949 * 90.04529 * 15 14 13 17 17 C 1.36932 * 135.96431 * 206.41651 * 16 15 14 18 18 H 1.08004 * 120.00066 * 6.79093 * 17 16 15 19 19 C 1.38808 * 119.99884 * 186.79269 * 17 16 15 20 20 N 1.31629 * 119.99858 * 172.34298 * 19 17 16 21 21 Si 1.86797 * 120.00274 * 352.34104 * 19 17 16 22 22 H 1.48502 * 109.47471 * 175.35206 * 21 19 17 23 23 H 1.48504 * 109.47042 * 55.35242 * 21 19 17 24 24 H 1.48501 * 109.47081 * 295.35483 * 21 19 17 25 25 C 1.47219 * 88.06699 * 26.66772 * 16 15 14 26 26 O 1.42842 * 108.32807 * 1.60437 * 14 13 12 27 27 C 1.39268 * 120.55688 * 0.25507 * 5 4 3 28 28 C 1.38578 * 120.32604 * 180.02562 * 2 1 3 29 29 C 1.50709 * 120.75408 * 359.97345 * 28 2 1 30 30 H 1.09000 * 109.47086 * 89.99463 * 1 2 3 31 31 H 1.09001 * 109.47622 * 209.99404 * 1 2 3 32 32 H 1.09005 * 109.47552 * 329.99850 * 1 2 3 33 33 H 1.08001 * 119.54686 * 0.03162 * 3 2 1 34 34 H 0.96994 * 119.99774 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47350 * 60.00170 * 9 8 6 36 36 H 1.09006 * 109.47215 * 300.00587 * 9 8 6 37 37 H 1.09008 * 110.87007 * 86.77543 * 12 10 9 38 38 H 1.08998 * 111.05506 * 323.17713 * 12 10 9 39 39 H 1.08993 * 110.56812 * 262.29252 * 13 12 10 40 40 H 1.08997 * 110.68568 * 139.49791 * 13 12 10 41 41 H 1.09002 * 113.50148 * 335.31600 * 15 14 13 42 42 H 1.09005 * 113.56183 * 204.78256 * 15 14 13 43 43 H 0.96991 * 120.00047 * 4.89162 * 20 19 17 44 44 H 1.09004 * 113.49685 * 88.06070 * 25 16 15 45 45 H 1.08993 * 113.49991 * 218.60291 * 25 16 15 46 46 H 1.07990 * 120.47398 * 179.71897 * 27 5 4 47 47 H 1.09002 * 109.46785 * 90.00020 * 29 28 2 48 48 H 1.09000 * 109.47195 * 209.99611 * 29 28 2 49 49 H 1.08998 * 109.47364 * 330.00351 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2294 0.0866 0.0005 6 6 5.7097 0.1512 0.0005 7 8 6.3625 -0.8737 0.0001 8 7 6.3321 1.3466 0.0000 9 6 7.7956 1.4105 0.0006 10 6 8.2423 2.8739 0.0004 11 1 7.7558 3.4240 -0.8050 12 6 9.7846 2.9730 -0.1255 13 6 10.0768 4.3490 0.5264 14 6 8.8402 4.6124 1.3936 15 6 9.1225 5.0966 2.8135 16 7 9.0788 6.4725 2.2916 17 6 9.6223 7.6780 2.6472 18 1 10.3460 7.7291 3.4474 19 6 9.2433 8.8343 1.9793 20 7 9.6474 10.0087 2.4154 21 14 8.1599 8.7238 0.4616 22 1 7.8077 10.0920 0.0041 23 1 6.9192 7.9778 0.7923 24 1 8.8915 8.0138 -0.6182 25 6 8.1896 5.9861 1.2238 26 8 7.9634 3.4906 1.2782 27 6 3.5923 -1.1518 -0.0054 28 6 2.2067 -1.1962 -0.0005 29 6 1.4779 -2.5153 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3634 0.8900 0.5139 33 1 1.6647 2.1305 0.0005 34 1 5.8109 2.1647 0.0000 35 1 8.1814 0.9124 -0.8890 36 1 8.1807 0.9134 0.8910 37 1 10.0901 2.9664 -1.1718 38 1 10.2749 2.1704 0.4254 39 1 10.1804 5.1200 -0.2370 40 1 10.9739 4.2998 1.1436 41 1 10.1043 4.8038 3.1855 42 1 8.3208 4.8731 3.5175 43 1 10.2667 10.0627 3.1599 44 1 7.1341 6.0038 1.4954 45 1 8.3841 6.4441 0.2541 46 1 4.1694 -2.0645 -0.0099 47 1 1.3018 -2.8331 -1.0282 48 1 2.0814 -3.2639 0.5128 49 1 0.5234 -2.4031 0.5136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053639749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = 13.882624 kcal Electronic energy + Delta-G solvation = -29693.136270 eV Core-core repulsion = 25622.202964 eV Total energy + Delta-G solvation = -4070.933306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.05090 -40.24297 -39.22769 -36.96544 -35.14113 -34.57494 -32.82362 -32.32758 -31.99409 -29.77145 -28.82831 -27.76590 -26.85142 -25.51282 -24.19221 -23.18593 -22.72274 -21.51264 -21.24170 -20.32587 -19.13546 -18.01502 -17.47703 -17.35944 -16.62219 -15.81753 -15.76144 -15.58617 -15.52415 -15.26121 -14.84171 -14.60998 -14.47580 -13.89017 -13.70157 -13.55261 -13.37867 -13.28865 -13.17228 -13.13918 -13.00966 -12.79280 -12.39690 -12.29979 -12.04211 -11.99061 -11.56762 -11.42296 -11.22627 -11.05574 -10.68658 -10.49963 -10.38102 -10.32938 -9.88461 -9.85335 -9.80245 -9.40743 -9.22286 -9.13027 -8.87169 -8.79587 -7.16093 -6.33593 -3.24145 0.30529 0.82255 2.48788 2.89663 3.39289 3.44404 3.54026 3.64344 3.79835 3.89427 4.20481 4.31838 4.40499 4.44307 4.58308 4.60888 4.71114 4.83682 4.88967 4.90642 4.94481 4.99494 5.00936 5.09260 5.14659 5.17106 5.29578 5.39161 5.42201 5.45198 5.47219 5.50200 5.58446 5.64034 5.80806 5.86047 5.91934 6.16271 6.21115 6.23214 6.23598 6.28557 6.32781 6.34152 6.38987 6.57690 7.06847 7.22861 7.33162 7.53197 8.00969 8.22232 8.96308 9.48363 10.34372 11.19405 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002307 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.321511 B =12133.597602 C =13421.757481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C 0.104 3.896 4 N -0.456 5.456 5 C 0.076 3.924 6 C 0.571 3.429 7 O -0.540 6.540 8 N -0.703 5.703 9 C 0.127 3.873 10 C 0.061 3.939 11 H 0.077 0.923 12 C -0.145 4.145 13 C -0.113 4.113 14 C 0.060 3.940 15 C 0.133 3.867 16 N -0.620 5.620 17 C -0.301 4.301 18 H 0.084 0.916 19 C -0.025 4.025 20 N -0.933 5.933 21 Si 1.070 2.930 22 H -0.295 1.295 23 H -0.285 1.285 24 H -0.294 1.294 25 C 0.090 3.910 26 O -0.354 6.354 27 C -0.108 4.108 28 C -0.054 4.054 29 C -0.119 4.119 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.416 0.584 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.261 0.739 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.147 0.853 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 -25.375 -8.827 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.122 4.122 3 C -0.057 4.057 4 N -0.167 5.167 5 C -0.062 4.062 6 C 0.356 3.644 7 O -0.417 6.417 8 N -0.354 5.354 9 C 0.004 3.996 10 C 0.003 3.997 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.151 4.151 14 C 0.019 3.981 15 C 0.007 3.993 16 N -0.351 5.351 17 C -0.427 4.427 18 H 0.102 0.898 19 C -0.223 4.223 20 N -0.575 5.575 21 Si 0.903 3.097 22 H -0.222 1.222 23 H -0.212 1.212 24 H -0.223 1.223 25 C -0.036 4.036 26 O -0.272 6.272 27 C -0.129 4.129 28 C -0.062 4.062 29 C -0.175 4.175 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.181 0.819 34 H 0.253 0.747 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.165 0.835 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.871 -24.222 -9.710 30.543 hybrid contribution 0.236 -1.068 1.134 1.576 sum -15.635 -25.290 -8.576 30.945 Atomic orbital electron populations 1.20838 0.89846 1.03616 1.02965 1.21049 0.97861 0.93624 0.99625 1.22728 0.89229 0.97753 0.95942 1.67557 1.08777 1.30172 1.10233 1.21082 0.94131 0.89700 1.01273 1.17847 0.85888 0.83840 0.76815 1.90775 1.65979 1.34201 1.50714 1.45796 1.07664 1.08920 1.72973 1.21506 0.79545 0.95333 1.03246 1.23372 0.95555 0.92548 0.88220 0.90474 1.23142 0.94657 0.98589 1.01949 1.22385 0.97683 0.96019 0.99020 1.23689 0.89823 0.85738 0.98839 1.22362 0.99135 0.85215 0.92606 1.45711 1.54650 1.04779 1.29920 1.20086 1.22204 0.81901 1.18519 0.89816 1.25741 1.02429 0.90793 1.03380 1.70925 1.34417 1.22871 1.29319 0.83698 0.76159 0.74341 0.75517 1.22206 1.21215 1.22254 1.23197 0.95576 0.90975 0.93840 1.88791 1.60111 1.43218 1.35078 1.21989 0.94154 0.99050 0.97737 1.20207 0.93240 0.95898 0.96809 1.20888 1.00493 0.92962 1.03151 0.90425 0.90744 0.90746 0.81934 0.74720 0.89886 0.90194 0.90051 0.90171 0.90138 0.89916 0.93192 0.93658 0.92896 0.93025 0.93076 0.83484 0.90254 0.90737 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 9.65 36.00 0.35 -0.12 16 2 C -0.12 -0.86 5.91 -104.36 -0.62 -1.48 16 3 C 0.10 0.90 10.86 -17.56 -0.19 0.71 16 4 N -0.46 -5.19 9.54 -9.80 -0.09 -5.28 16 5 C 0.08 0.90 6.75 -83.01 -0.56 0.34 16 6 C 0.57 7.69 7.81 -12.18 -0.10 7.60 16 7 O -0.54 -8.39 16.32 5.35 0.09 -8.30 16 8 N -0.70 -8.81 5.55 -61.14 -0.34 -9.15 16 9 C 0.13 1.50 5.41 -4.04 -0.02 1.48 16 10 C 0.06 0.78 3.38 -25.64 -0.09 0.69 16 11 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.15 -1.71 6.60 -24.57 -0.16 -1.87 16 13 C -0.11 -1.76 6.46 -25.49 -0.16 -1.92 16 14 C 0.06 1.09 1.66 -90.66 -0.15 0.94 16 15 C 0.13 2.77 8.20 -8.03 -0.07 2.71 16 16 N -0.62 -15.55 3.66 -184.61 -0.68 -16.23 16 17 C -0.30 -8.75 11.08 -15.06 -0.17 -8.91 16 18 H 0.08 2.55 8.05 -52.48 -0.42 2.12 16 19 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 20 N -0.93 -29.59 13.70 55.49 0.76 -28.83 16 21 Si 1.07 27.04 25.13 -169.99 -4.27 22.76 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.29 -6.80 6.11 56.52 0.35 -6.46 16 24 H -0.29 -6.95 6.63 56.52 0.37 -6.57 16 25 C 0.09 1.97 5.22 -7.88 -0.04 1.93 16 26 O -0.35 -5.84 11.02 -35.23 -0.39 -6.23 16 27 C -0.11 -1.08 9.34 -39.05 -0.36 -1.44 16 28 C -0.05 -0.41 5.91 -104.35 -0.62 -1.03 16 29 C -0.12 -0.54 9.67 36.01 0.35 -0.19 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 6.06 -51.93 -0.31 -0.08 16 32 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.42 5.13 7.80 -40.82 -0.32 4.81 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 39 H 0.08 1.31 7.82 -51.93 -0.41 0.90 16 40 H 0.08 1.27 7.81 -51.93 -0.41 0.87 16 41 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 44 H 0.05 1.15 7.69 -51.93 -0.40 0.76 16 45 H 0.05 1.13 4.50 -51.93 -0.23 0.90 16 46 H 0.15 1.38 7.64 -52.49 -0.40 0.98 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 49 H 0.08 0.25 6.07 -51.93 -0.32 -0.06 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -35.24 393.59 -9.20 -44.43 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.50 Total: 2.28 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.70 Total: -1.40 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.35 Total: -59.48 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.30 Total: -14.53 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -4.27 Total: 22.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.24 -9.20 -44.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053639749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.317 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds